*2026/09/22 15:14:58.45 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2025/04/15 04:29:11.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 14 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : A48A105C NUMBER OF CHANNELS : 31 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 14 2 Bottle:Firing_Sequence n/a 1 14 3 Pressure decibar 1.6 183.8 4 Depth metres 1.6 182.2 5 Temperature:Secondary 'deg C (ITS90)' 7.2214 9.5063 6 Transmissivity %/metre 80.3 85.3 7 Transmissivity:Green %/metre 86.9 92.2 8 Fluorescence:URU:Wetlabs mg/m^3 0.174 1.28 9 Salinity:T1:C1 PSS-78 30.6619 33.8318 10 Oxygen:Dissolved:SBE mL/L 2.12 6.18 11 Oxygen:Dissolved:SBE umol/kg 92.2 269.6 12 PAR uE/m^2/sec 0 8.1 13 PAR:Reference uE/m^2/sec 0 0 14 Conductivity:Secondary S/m 3.29866 3.4715 15 Number_of_bin_records n/a 51 241 16 Sample_Number n/a 323 336 17 Chlorophyll:Extracted mg/m^3 1.14 1.34 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 0.34 0.62 20 Oxygen:Dissolved mL/L 2.137 6.208 21 Oxygen:Dissolved umol/kg 92.99033 270.8658 22 Flag:Oxygen:Dissolved n/a 23 Temperature:Draw 'deg C (ITS90)' 8.2 10 24 Nitrate_plus_Nitrite umol/L 19.59 33.02 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 36.62 49.04 27 Flag:Silicate n/a 28 Phosphate umol/L 1.593 2.411 29 Flag:Phosphate n/a 30 Salinity:Bottle PSS-78 30.6643 33.8298 31 Flag:Salinity:Bottle n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 7 F ' ' 1 13 -99 ' ' 7 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' 30 -99 ' ' 9 F R4 4 31 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2025-005 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Jackson J. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : 72 EVENT NUMBER : 88 LATITUDE : 48 18.59000 N ! (deg min) LONGITUDE : 124 4.05000 W ! (deg min) WATER DEPTH : 189 ALTIMETER (M) : 4.71 ! custom item *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-2216 Altimeter ' ' 73171 PAR/Irradiance:Biospherical/Licor ' ' 4615 'Transmissometer:WET Labs C-Star' ' ' 498DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- DATCNV 1.0 2026/09/03 13:14:47 3184 3184 OXYGEN 1.0 2026/09/03 13:14:47 3184 3184 AV1 1.0 2026/09/03 13:14:47 3184 14 ADDSAMP 1.0 2026/09/03 13:14:50 14 14 RENAME 1.0 2026/09/03 13:14:50 14 14 MERGE 1.0 2026/09/03 13:14:51 14 14 CALIB 12.1 2026/09/15 10:58:08 14 14 SORT 3.6 2026/09/22 14:11:00 14 14 REMOVECH 8.2 2026/09/22 14:12:24 14 14 CHGUNITS 3.2 2026/09/22 14:18:19 14 14 CHGUNITS 3.2 2026/09/22 14:19:36 14 14 REORDER 1.3.1 2026/09/22 15:02:22 ? ? HDREDIT2 3.2 2026/09/22 15:14:58 ? ? $END $REMARKS -DATCNV: 2026/09/03 13:14:47 Converted raw CTD cast (.hex) to .ros format. Output contained 3184 records with instrument channels. -CONVERT OXYGEN: 2026/09/03 13:14:47 Converted Oxygen data from Voltage to ml/L and umol/Kg Output contained 3184 records of Oxygen data -AV1: 2026/09/03 13:14:47 Averaged CTD data around each bottle position. Channel 'Number_of_bin_records' was added to file. Records reduced from 3184 to 14 (one row per bottle). -ADDSAMP: 2026/09/03 13:14:50 Merge Sample numbers assigned from Compiled Rosette Sheets into AV1 Niskin# column renamed to bottle position for consistency with AV1. 14 AV1 records successfully annotated with Sample_Number. -RENAME: 2026/09/03 13:14:50 Standardized and reordered channel names for CHE output. 19 Columns renamed and reordered successfully -MERGE: 2026/09/03 13:14:51 Merged Lab chemistry data into AV1 output. Merge key: Sample_Number Merge Scheme Used: Add Secondary to Matching Primary Primary Channels to Include: ALL Secondary Channels to Include: Station Salinity:Bottle Flag:Salinity:Bottle Station_CHL Chlorophyll:Extracted Flag:Chlorophyll:Extracted Phaeo-Pigment:Extracted Station_OXY Oxygen:Dissolved Flag:Oxygen:Dissolved Temperature:Draw Station_NUTS Depth_NUTS Nitrate_plus_Nitrite Flag:Nitrate_plus_Nitrite Silicate Flag:Silicate Phosphate Flag:Phosphate 14 secondary lab records matched to primary records. -CALIB parameters: 2026/09/15 10:58:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2025-005\Processing\doc\2025-005-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T1:C1 PSS-78 10 -0.4100000E-02 0.1000000E+01 14 Oxygen:Dissolved:SBE mL/L 10 0.1380000E-01 0.1019900E+01 -SORT parameters: 2026/09/22 14:11:00 Sorted in ascending order of channel Pressure -REMOVECH 2026/09/22 14:12:24 The following CHANNEL(S) were removed: Temperature:Primary [deg C (ITS90)] Salinity:T0:C0 [PSS-78] Conductivity:Primary [S/m] -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2026/09/22 15:14:58 Applied edit header: E:\Telework\2025-005\Processing\doc\HYDRO\2025-005-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 23: Temperature:Draw [deg C (ITS90)] Format: F7.1 ==> F6.1 Channel 12: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 13: PAR:Reference [uE/m^2/sec] Name: SPAR ==> PAR:Reference $END *COMMENTS Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2025-005/lab_data/2025-005_OXY.csv ------------------------------------------------------- Sample_Number 335: ALL: Niskin failed integrity check at vent. ---------------------------------------------------------------------------------------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 3-10 days after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2025-005_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2025-005_OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 8 - 13 days after collection. For details including a duplicate analysis, see document QF2025-005_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2025-005nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the SBE fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples. It is recommended that users check extracted chlorophyll values where available. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.41E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.138E-01 1.0199) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9---- --10-- --11- --12-- --13-- ----14--- -15- -16- --17-- 18 --19-- ---20-- --21- 22 --23- --24-- 25 --26-- 27 ---28-- 29 ---30--- 31 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Salinity Oxygen Oxyge PAR PAR: Conductiv Numb Samp Chloro Fl Phaeo- Oxygen: Oxyge Fl Tempe Nitrat Fl Silica Fl Phospha Fl Salinity Fl !tt tt re ure: missi missi cence: :T1:C1 : n: Refere ity: er_o le_ phyll: ag Pigmen Dissolv n: ag ratur e_ ag te ag te ag :Bottle ag !~u ~u Secondar vity vity: URU: Dissol Disso nce Secondary ~bin Numb Extrac ~a t: ed Disso ~o e: plus_ ~t ~i ~p ~o !mb en y Green Wetlabs ved: lved: _rec er ted ct Extrac lved lv Draw Nitrit ri ca ha tt !er ce SBE SBE ords ed ted ed e te te te le !-- -- ------ ------ -------- ----- ----- ------- -------- ------ ----- ------ ------ --------- ---- ---- ------ -- ------ ------- ----- -- ----- ------ -- ------ -- ------- -- -------- -- *END OF HEADER 13 13 1.6 1.6 9.5057 83.3 89.9 1.177 30.6619 6.18 269.6 8.1 0.0 3.34037 51 335 -99.00 0 -99.00 6.208 270.9 3 10.0 -99.00 0 -99.00 0 -99.000 0 30.6643 3 14 14 1.7 1.7 9.5063 83.3 89.8 1.232 30.6624 6.18 269.6 7.5 0.0 3.34049 241 336 1.30 6 0.34 -99.000 -99.0 0 -99.0 19.59 0 36.62 0 1.593 0 -99.0000 0 12 12 5.5 5.5 9.4337 83.1 89.7 1.204 30.6686 6.16 268.7 1.9 0.0 3.33515 241 334 1.34 0 0.38 6.183 269.8 0 9.8 19.79 0 36.83 0 1.742 0 30.6735 0 11 11 10.0 9.9 9.3336 82.3 89.8 1.190 30.6939 6.01 262.2 0.5 0.0 3.32941 241 333 1.24 0 0.34 6.155 268.5 0 9.7 22.82 0 40.91 0 1.831 0 30.6996 0 10 10 20.7 20.5 8.6821 84.3 90.8 1.280 30.9367 5.61 244.7 0.0 0.0 3.29866 241 332 1.14 0 0.62 5.640 246.0 0 9.2 22.85 0 40.90 0 1.863 0 30.9317 0 9 9 30.1 29.9 8.4983 85.2 92.1 0.730 31.1890 5.17 225.4 0.0 0.0 3.30776 241 331 -99.00 0 -99.00 5.200 226.8 0 9.0 24.18 6 42.04 6 1.905 6 31.1809 0 8 8 40.8 40.4 8.4352 85.3 92.2 0.591 31.3150 5.01 218.4 0.0 0.0 3.31490 241 330 -99.00 0 -99.00 5.044 219.9 0 8.9 24.51 0 42.22 0 1.932 0 -99.0000 0 7 7 50.4 50.0 8.2966 84.5 91.2 0.439 31.6073 4.66 203.1 0.0 0.0 3.33136 241 329 -99.00 0 -99.00 4.665 203.4 0 8.8 25.93 0 43.49 0 2.039 0 31.6340 0 6 6 75.2 74.6 7.9996 81.6 87.7 0.278 32.3042 3.92 170.8 0.0 0.0 3.37274 241 328 -99.00 0 -99.00 3.987 173.7 6 8.7 26.91 0 43.20 0 2.092 0 32.2779 6 5 5 100.4 99.6 7.7854 81.3 87.4 0.204 33.0936 3.09 134.5 0.0 0.0 3.42902 241 327 -99.00 0 -99.00 3.158 137.5 0 8.5 28.73 0 44.38 0 2.214 0 33.0452 0 4 4 125.6 124.5 7.6746 84.8 92.0 0.191 33.6443 2.50 108.8 0.0 0.0 3.47150 241 326 -99.00 0 -99.00 2.536 110.4 0 8.5 30.54 0 43.43 0 2.268 0 -99.0000 0 3 3 150.3 149.0 7.2787 81.6 88.2 0.174 33.8170 2.17 94.4 0.0 0.0 3.45302 241 325 -99.00 0 -99.00 2.169 94.4 0 8.3 32.67 0 48.39 0 2.408 0 33.8146 0 2 2 175.5 174.0 7.2214 80.6 87.2 0.183 33.8318 2.12 92.2 0.0 0.0 3.45035 241 324 -99.00 0 -99.00 2.154 93.7 0 8.2 33.02 6 49.04 6 2.408 6 -99.0000 0 1 1 183.8 182.2 7.2257 80.3 86.9 0.179 33.8310 2.14 93.1 0.0 0.0 3.45104 241 323 -99.00 0 -99.00 2.137 93.0 6 8.2 32.93 0 48.96 0 2.411 0 33.8298 0