*2026/09/22 15:14:57.73 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2025/04/12 12:18:06.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 16 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : A48A105C NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 16 2 Bottle:Firing_Sequence n/a 1 16 3 Pressure decibar 1.6 270.4 4 Depth metres 1.6 268 5 Temperature:Secondary 'deg C (ITS90)' 8.6312 9.6314 6 Transmissivity %/metre 79.7 87.9 7 Transmissivity:Green %/metre 85 95.1 8 Fluorescence:URU:Wetlabs mg/m^3 0.167 4.731 9 Salinity:T1:C1 PSS-78 25.6941 31.1374 10 Oxygen:Dissolved:SBE mL/L 2.54 8.22 11 Oxygen:Dissolved:SBE umol/kg 110.8 359.8 12 PAR uE/m^2/sec 0 6.9 13 PAR:Reference uE/m^2/sec 0 0 14 Conductivity:Secondary S/m 2.85287 3.40892 15 Number_of_bin_records n/a 50 241 16 Sample_Number n/a 124 139 17 Chlorophyll:Extracted mg/m^3 2.23 8.94 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 1.07 1.8 20 Oxygen:Dissolved mL/L 2.577 8.143 21 Oxygen:Dissolved umol/kg 112.3744 356.418 22 Flag:Oxygen:Dissolved n/a 23 Temperature:Draw 'deg C (ITS90)' 8.3 11.2 24 Nitrate_plus_Nitrite umol/L 2.39 31.08 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 5.5 66.47 27 Flag:Silicate n/a 28 Phosphate umol/L 0.463 2.846 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 7 F ' ' 1 13 -99 ' ' 7 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2025-005 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Jackson J. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : 2 EVENT NUMBER : 42 LATITUDE : 49 24.10000 N ! (deg min) LONGITUDE : 124 9.27000 W ! (deg min) WATER DEPTH : 280 ALTIMETER (M) : 8.89 ! custom item *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-2216 Altimeter ' ' 73171 PAR/Irradiance:Biospherical/Licor ' ' 4615 'Transmissometer:WET Labs C-Star' ' ' 498DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- DATCNV 1.0 2026/09/03 13:14:47 3665 3665 OXYGEN 1.0 2026/09/03 13:14:47 3665 3665 AV1 1.0 2026/09/03 13:14:47 3665 16 ADDSAMP 1.0 2026/09/03 13:14:50 16 16 RENAME 1.0 2026/09/03 13:14:50 16 16 MERGE 1.0 2026/09/03 13:14:51 16 16 CALIB 12.1 2026/09/15 10:58:07 16 16 SORT 3.6 2026/09/22 14:10:59 16 16 REMOVECH 8.2 2026/09/22 14:12:23 16 16 CHGUNITS 3.2 2026/09/22 14:18:19 16 16 CHGUNITS 3.2 2026/09/22 14:19:35 16 16 REORDER 1.3.1 2026/09/22 15:02:20 ? ? HDREDIT2 3.2 2026/09/22 15:14:57 ? ? $END $REMARKS -DATCNV: 2026/09/03 13:14:47 Converted raw CTD cast (.hex) to .ros format. Output contained 3665 records with instrument channels. -CONVERT OXYGEN: 2026/09/03 13:14:47 Converted Oxygen data from Voltage to ml/L and umol/Kg Output contained 3665 records of Oxygen data -AV1: 2026/09/03 13:14:47 Averaged CTD data around each bottle position. Channel 'Number_of_bin_records' was added to file. Records reduced from 3665 to 16 (one row per bottle). -ADDSAMP: 2026/09/03 13:14:50 Merge Sample numbers assigned from Compiled Rosette Sheets into AV1 Niskin# column renamed to bottle position for consistency with AV1. 16 AV1 records successfully annotated with Sample_Number. -RENAME: 2026/09/03 13:14:50 Standardized and reordered channel names for CHE output. 19 Columns renamed and reordered successfully -MERGE: 2026/09/03 13:14:51 Merged Lab chemistry data into AV1 output. Merge key: Sample_Number Merge Scheme Used: Add Secondary to Matching Primary Primary Channels to Include: ALL Secondary Channels to Include: Station Chlorophyll:Extracted Flag:Chlorophyll:Extracted Phaeo-Pigment:Extracted Station_OXY Oxygen:Dissolved Flag:Oxygen:Dissolved Temperature:Draw Station_NUTS Depth_NUTS Nitrate_plus_Nitrite Flag:Nitrate_plus_Nitrite Silicate Flag:Silicate Phosphate Flag:Phosphate 16 secondary lab records matched to primary records. -CALIB parameters: 2026/09/15 10:58:07 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2025-005\Processing\doc\2025-005-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T1:C1 PSS-78 10 -0.4100000E-02 0.1000000E+01 14 Oxygen:Dissolved:SBE mL/L 10 0.1380000E-01 0.1019900E+01 -SORT parameters: 2026/09/22 14:10:59 Sorted in ascending order of channel Pressure -REMOVECH 2026/09/22 14:12:23 The following CHANNEL(S) were removed: Temperature:Primary [deg C (ITS90)] Salinity:T0:C0 [PSS-78] Conductivity:Primary [S/m] -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2026/09/22 15:14:57 Applied edit header: E:\Telework\2025-005\Processing\doc\HYDRO\2025-005-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 23: Temperature:Draw [deg C (ITS90)] Format: F7.1 ==> F6.1 Channel 12: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 13: PAR:Reference [uE/m^2/sec] Name: SPAR ==> PAR:Reference $END *COMMENTS Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2025-005/lab_data/2025-005_OXY.csv ------------------------------------------------------- Sample_Number 124: OXY: sample over-titrated. ---------------------------------------------------------------------------------------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 3-10 days after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2025-005_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2025-005_OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 8 - 13 days after collection. For details including a duplicate analysis, see document QF2025-005_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2025-005nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the SBE fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples. It is recommended that users check extracted chlorophyll values where available. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.41E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.138E-01 1.0199) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9---- --10-- --11- --12-- --13-- ----14--- -15- -16- --17-- 18 --19-- ---20-- --21- 22 --23- --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Salinity Oxygen Oxyge PAR PAR: Conductiv Numb Samp Chloro Fl Phaeo- Oxygen: Oxyge Fl Tempe Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: :T1:C1 : n: Refere ity: er_o le_ phyll: ag Pigmen Dissolv n: ag ratur e_ ag te ag te ag !~u ~u Secondar vity vity: URU: Dissol Disso nce Secondary ~bin Numb Extrac ~a t: ed Disso ~o e: plus_ ~t ~i ~p !mb en y Green Wetlabs ved: lved: _rec er ted ct Extrac lved lv Draw Nitrit ri ca ha !er ce SBE SBE ords ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- -------- ------ ----- ------ ------ --------- ---- ---- ------ -- ------ ------- ----- -- ----- ------ -- ------ -- ------- -- *END OF HEADER 15 15 1.6 1.6 9.5929 82.3 87.2 2.516 25.6941 8.04 352.1 6.9 0.0 2.85287 50 138 -99.00 0 -99.00 8.041 352.2 0 11.2 -99.00 0 -99.00 0 -99.000 0 16 16 1.6 1.6 9.5910 82.1 87.6 2.641 25.6958 8.04 352.1 6.9 0.0 2.85291 241 139 5.59 0 1.07 -99.000 -99.0 0 -99.0 2.39 0 5.87 0 0.463 0 14 14 4.9 4.9 9.4872 79.7 85.0 4.731 26.5349 8.22 359.8 1.7 0.0 2.92973 241 137 8.94 6 1.63 8.143 356.4 6 10.1 2.82 0 5.50 0 0.488 0 13 13 10.5 10.4 8.9411 86.5 93.4 1.196 28.2594 7.54 329.5 0.2 0.0 3.05927 241 136 2.23 0 1.43 7.696 336.4 0 9.3 11.45 6 16.43 6 1.292 6 12 12 20.5 20.3 8.7697 86.4 93.0 1.284 28.9051 6.04 263.8 0.0 0.0 3.10924 241 135 2.59 0 1.80 6.127 267.6 0 9.0 20.13 0 38.70 0 2.034 0 11 11 30.3 30.1 8.6584 87.9 95.1 0.607 29.4486 5.33 232.7 0.0 0.0 3.15348 241 134 -99.00 0 -99.00 5.364 234.2 0 8.7 26.58 0 52.90 0 2.445 0 10 10 40.5 40.1 8.7197 87.8 95.1 0.561 29.6284 5.00 218.3 0.0 0.0 3.17626 241 133 -99.00 0 -99.00 4.559 199.0 0 8.7 27.90 0 54.72 0 2.501 0 9 9 50.1 49.7 8.6852 87.8 95.1 0.515 29.7295 4.90 213.9 0.0 0.0 3.18364 241 132 -99.00 0 -99.00 4.855 211.9 0 8.7 29.74 0 57.84 0 2.588 0 8 8 75.0 74.4 8.7569 87.6 94.9 0.372 30.1612 4.14 180.7 0.0 0.0 3.23229 241 131 -99.00 0 -99.00 4.170 182.0 0 8.5 31.08 6 58.72 6 2.644 6 7 7 100.0 99.2 8.6312 87.6 94.7 0.349 30.3480 4.20 183.3 0.0 0.0 3.24099 241 130 -99.00 0 -99.00 4.227 184.4 0 8.4 30.90 3 58.14 3 2.594 3 6 6 125.3 124.1 8.6884 87.7 94.8 0.191 30.5011 4.04 176.3 0.0 0.0 3.26152 241 129 -99.00 0 -99.00 4.086 178.3 6 8.4 30.73 0 58.82 0 2.600 0 5 5 150.5 149.1 8.6386 87.2 94.2 0.206 30.5828 4.06 177.1 0.0 0.0 3.26630 241 128 -99.00 0 -99.00 4.057 177.0 0 8.3 30.53 0 59.33 0 2.602 0 4 4 175.2 173.6 8.7557 87.2 94.1 0.204 30.6835 3.84 167.5 0.0 0.0 3.28680 241 127 -99.00 0 -99.00 3.852 168.0 0 8.3 30.53 0 60.27 0 2.635 0 3 3 200.6 198.8 9.0438 87.3 94.2 0.168 30.8350 3.45 150.5 0.0 0.0 3.32667 241 126 -99.00 0 -99.00 3.481 151.8 0 8.4 30.54 0 61.15 0 2.680 0 2 2 251.1 248.8 9.3386 87.4 94.2 0.167 30.9837 3.04 132.6 0.0 0.0 3.36815 241 125 -99.00 0 -99.00 3.045 132.8 0 8.5 30.44 0 62.62 0 2.740 0 1 1 270.4 268.0 9.6314 86.4 93.0 0.184 31.1374 2.54 110.8 0.0 0.0 3.40892 241 124 -99.00 0 -99.00 2.577 112.4 2 8.6 30.50 0 66.47 0 2.846 0