*2026/01/14 14:49:57.12 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/10/18 01:08:03.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 19 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 8647E24B NUMBER OF CHANNELS : 25 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 19 2 Bottle:Firing_Sequence n/a 1 19 3 Pressure decibar 1.729 530.239 4 Depth metres 1.714 524.969 5 Temperature:Secondary 'deg C (ITS90)' 9.194 11.705 6 Transmissivity %/metre 32.2 52.4 7 Transmissivity:Green %/metre 33.1 83.6 8 Fluorescence:URU:Seapoint mg/m^3 0.183 2.118 9 Fluorescence:URU:Wetlabs mg/m^3 0.209 3.031 10 Salinity:T1:C1 PSS-78 16.5055 29.3842 11 Oxygen:Dissolved:SBE mL/L 2.551 6.24 12 Conductivity:Secondary S/m 2.007125 3.293471 13 Number_of_bin_records n/a 34 241 14 Sample_Number n/a 69 87 15 Salinity:Bottle PSS-78 15.614 29.382 16 Flag:Salinity:Bottle n/a 17 Chlorophyll:Extracted mg/m^3 0.34 2.19 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 0.13 0.62 20 Nitrate_plus_Nitrite umol/L 11.56 24.5 21 Flag:Nitrate_plus_Nitrite n/a 22 Silicate umol/L 30.68 66.71 23 Flag:Silicate n/a 24 Phosphate umol/L 0.886 2.659 25 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 8 F ' ' 3 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 10 F ' ' 5 13 -99 ' ' 5 I I 0 14 -99 ' ' 5 I I 0 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 8 F R4 3 25 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-066 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Inlets SCIENTIST : Spear D. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : B.C. Inlets STATION : SE6 EVENT NUMBER : 17 LATITUDE : 51 4.32000 N ! (deg min) LONGITUDE : 126 52.23000 W ! (deg min) WATER DEPTH : 534 ALTIMETER (M) : 5.03 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 1453 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 3500 'Pressure:Digiquartz with TC' ' ' 1453 Temperature:2 ' ' 6565 Conductivity:2 ' ' 5043 'Oxygen:SBE 43' ' ' 1438 Fluorometer:Seapoint ' ' 3640 Altimeter ' ' 73171 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-2216 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG $END $REMARKS Software Version Seasave V 7.26.7.121 Comments from secondary file: E:\Telework\2024-066\Processing\hydro\2024-066-0017.mrgcln1s ------------------------------------------------------------ Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/12/09 13:27:22 3557 3557 CLEAN 5.3 2025/12/09 13:27:48 3557 3557 ADDSAMP 3.6 2025/12/09 14:39:46 3557 3557 BINAVE 4.2.1 2025/12/09 14:39:58 3557 19 HDREDIT2 3.2 2025/12/10 11:46:08 ? ? MERGE 3.6 2025/12/10 13:09:34 19 19 CLEAN 5.3 2026/01/08 14:14:24 19 19 CALIB 12.1 2026/01/08 14:14:54 19 19 CALIB 12.1 2026/01/08 14:16:47 19 19 SORT 3.6 2026/01/14 14:04:49 19 19 REMOVECH 8.2 2026/01/14 14:06:33 19 19 CHGUNITS 3.2 2026/01/14 14:49:14 19 19 CHGUNITS 3.2 2026/01/14 14:49:33 19 19 REORDER 1.3.1 2026/01/14 14:49:51 ? ? HDREDIT2 3.2 2026/01/14 14:49:57 ? ? $END $REMARKS -CLEAN functions: 2025/12/09 13:27:47 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-066\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -HEADER EDITS: 2025/12/10 11:46:08 Channel 3: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number -The following MERGE parameters were used: 2025/12/10 13:09:34 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Sample_Number, Temperature:Draw, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : E:\Telework\2024-066\Processing\hydro\2024-066-0017.samavghdr Secondary file: E:\Telework\2024-066\Processing\hydro\2024-066-0017.mrgcln1s 19 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-066\Processing\hydro\2024-066-0017.mrgcln1s ------------------------------------------------------------ -DATCNV: 2025/12/10 10:48:01 Converted raw CTD cast (.hex) to .ros format. Output contained 3557 records with instrument channels. -CONVERT OXYGEN: 2025/12/10 10:48:02 Converted Oxygen data from Voltage to ml/L and umol/Kg Output contained 3557 records of Oxygen data -AV1: 2025/12/10 10:48:02 Averaged CTD data around each bottle position. Channel 'Number_of_bin_records' was added to file. Records reduced from 3557 to 19 (one row per bottle). -ADDSAMP: 2025/12/10 10:48:04 Merge Sample numbers assigned from Compiled Rosette Sheets into AV1 Niskin# column renamed to bottle position for consistency with AV1. 19 AV1 records successfully annotated with Sample_Number. -RENAME: 2025/12/10 10:48:04 Standardized and reordered channel names for CHE output. 16 Columns renamed and reordered successfully -MERGE: 2025/12/10 10:48:04 Merged Lab chemistry data into AV1 output. Merge key: Sample_Number Merge Scheme Used: Add Secondary to Matching Primary Primary Channels to Include: ALL Secondary Channels to Include: Station Salinity:Bottle Flag:Salinity:Bottle Station_CHL Chlorophyll:Extracted Flag:Chlorophyll:Extracted Phaeo-Pigment:Extracted Station_NUTS Depth_NUTS Nitrate_plus_Nitrite Flag:Nitrate_plus_Nitrite Silicate Flag:Silicate Phosphate Flag:Phosphate 19 secondary lab records matched to primary records. -HEADER EDITS: 2025/12/10 12:37:55 Channel 1: Bottle_Number [n/a] Name: Bottle ==> Bottle_Number Units: Number ==> n/a -CLEAN functions: 2025/12/10 12:38:36 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -SORT parameters: 2025/12/10 12:54:08 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2026/01/08 14:14:19 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2026/01/08 14:14:54 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-066\Processing\doc\2024-066-rcalsil.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 31 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T1:C1 -CALIB parameters: 2026/01/08 14:16:47 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-066\Processing\doc\2024-066-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Salinity:T0:C0 PSS-78 10 -0.4000000E-02 0.1000000E+01 20 Oxygen:Dissolved:SBE mL/L 10 0.7000000E-02 0.1032400E+01 -SORT parameters: 2026/01/14 14:04:49 Sorted in ascending order of channel Pressure -REMOVECH 2026/01/14 14:06:33 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 - No units changed -CHANGE units: Temperature reference channel: Temperature:Draw [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 - No units changed -HEADER EDITS: 2026/01/14 14:49:57 Applied edit header: E:\Telework\2024-066\Processing\doc\HYDRO\2024-066-bot-hdr.txt Channel 3: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 10: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F9.4 Channel 11: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Conductivity:Secondary [S/m] Format: F11.6 ==> F10.5 Channel 13: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 15: Salinity:Bottle [PSS-78] Format: F9.3 ==> F9.4 Channel 19: Phaeo-Pigment:Extracted [mg/m^3] Units: n/a ==> mg/m^3 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 9: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS Comments from secondary file: E:\Telework\2024-066\Processing\hydro\2024-066-0017.mrgcln1s ------------------------------------------------------------ Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2024-066/lab_data/2024-066_NUTS.csv ------------------------------------------------------- Sample_Number 82: NUTS: Sample intended as duplicate, however, only one sample processed Sample_Number 73: SIL: Not included in precision study ---------------------------------------------------------------------------------------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 3-4 months after collection on a Turner Trilogy7200-000 fluorometer, using methods described in Holm-Hansen et al. (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details including a precisions analysis, see document QF2024-066_CHL*.xlsx. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-066_OXY*.xlsx. Salinity samples were collected in 200mL or 250mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 30-40 days after collection. For details see document QF2024-066_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-066nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers ---------------------------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Fluorescence and Transmissivity data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on the processing see the report: 2024-066_Processing_Report.doc. ---------------------------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Silicate umol/L 120 -99 (Salinity:T1:C1) (0.904 0.3E-02 25) Salinity:T0:C0 PSS-78 10 -99 () (-0.4E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.7E-02 1.0324) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9--- ---10--- --11-- ----12--- -13- -14- ---15--- 16 --17-- 18 --19-- --20-- 21 --22-- 23 ---24-- 25 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Fluores Salinity Oxygen Conductiv Numb Samp Salinity Fl Chloro Fl Phaeo- Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: cence: :T1:C1 : ity: er_o le_ :Bottle ag phyll: ag Pigmen e_ ag te ag te ag !~u ~u Secondar vity vity: URU: URU: Dissol Secondary ~bin Numb ~o Extrac ~a t: plus_ ~t ~i ~p !mb en y Green Seapoin Wetlabs ved: _rec er tt ted ct Extrac Nitrit ri ca ha !er ce t SBE ords le ed ted e te te te !-- -- ------ ------ -------- ----- ----- ------- ------- -------- ------ --------- ---- ---- -------- -- ------ -- ------ ------ -- ------ -- ------- -- *END OF HEADER 18 18 1.7 1.7 11.7050 32.4 33.4 2.118 2.960 16.5438 6.16 2.01196 38 86 15.6140 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 19 19 1.7 1.7 11.6931 33.0 34.6 2.110 3.031 16.5056 6.10 2.00712 241 87 -99.0000 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 17 17 1.7 1.7 11.7020 32.2 33.1 2.118 3.015 16.5055 6.24 2.00755 35 85 -99.0000 0 2.19 6 0.62 11.56 0 30.68 0 0.886 0 16 16 4.8 4.8 11.4695 43.5 52.8 0.830 1.393 20.9171 4.75 2.47886 241 84 -99.0000 0 1.35 0 0.41 14.14 0 33.62 0 1.172 0 15 15 10.1 10.0 10.8840 49.5 73.3 0.346 0.546 26.5401 3.73 3.03399 241 83 -99.0000 0 0.34 0 0.13 21.17 0 43.33 0 1.971 0 14 14 25.0 24.8 10.1458 49.9 76.1 0.249 0.364 28.4911 3.74 3.17707 241 82 -99.0000 0 -99.00 0 -99.00 22.36 2 45.93 2 2.117 2 12 12 50.1 49.6 9.1940 52.4 83.3 0.215 0.284 28.8313 2.83 3.13645 38 80 -99.0000 0 -99.00 0 -99.00 24.50 0 54.01 0 2.553 0 13 13 50.1 49.6 9.1946 52.2 83.4 0.213 0.284 28.8317 2.83 3.13654 241 81 28.8530 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 11 11 75.1 74.5 9.5437 52.0 83.6 0.196 0.243 29.0710 3.24 3.18902 241 79 -99.0000 0 -99.00 0 -99.00 23.08 0 49.28 0 2.416 0 10 10 100.0 99.1 9.5507 52.2 83.6 0.205 0.270 29.1493 2.55 3.19834 241 78 -99.0000 0 -99.00 0 -99.00 23.72 0 58.22 0 2.618 0 9 9 150.1 148.8 9.6713 51.7 82.9 0.195 0.250 29.2179 2.57 3.21685 241 77 -99.0000 0 -99.00 0 -99.00 23.39 0 58.75 0 2.576 0 8 8 200.0 198.2 9.6996 51.8 83.2 0.195 0.243 29.2404 2.85 3.22333 241 76 -99.0000 0 -99.00 0 -99.00 23.18 0 58.87 0 2.464 0 7 7 249.9 247.6 9.7798 51.8 83.2 0.195 0.243 29.2666 2.73 3.23438 241 75 -99.0000 0 -99.00 0 -99.00 23.29 0 60.26 0 2.516 0 6 6 300.1 297.3 9.8186 51.4 82.6 0.195 0.240 29.2791 2.60 3.24074 241 74 -99.0000 0 -99.00 0 -99.00 23.17 6 63.10 6 2.609 6 5 5 399.9 396.1 9.9319 50.8 80.9 0.192 0.253 29.3098 2.63 3.25688 241 73 -99.0000 0 -99.00 0 -99.00 22.75 0 66.71 26 2.659 0 4 4 500.0 495.1 10.1980 48.9 76.5 0.183 0.211 29.3757 3.18 3.28898 241 72 -99.0000 0 -99.00 0 -99.00 22.48 0 57.20 0 2.419 0 1 1 530.2 525.0 10.2279 46.9 72.9 0.183 0.209 29.3841 3.15 3.29343 34 69 -99.0000 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 2 2 530.2 525.0 10.2268 47.0 72.3 0.183 0.237 29.3835 3.15 3.29328 38 70 29.3820 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 3 3 530.2 525.0 10.2283 46.8 72.3 0.183 0.216 29.3842 3.15 3.29347 241 71 -99.0000 0 -99.00 0 -99.00 22.36 0 58.12 0 2.472 0