*2026/08/11 10:47:39.02 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/10/06 14:20:29.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 12 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : A48A105C NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 12 2 Bottle:Firing_Sequence n/a 1 12 3 Pressure decibar 3.1 477.9 4 Depth metres 3 473.3 5 Temperature:Secondary 'deg C (ITS90)' 5.4235 14.6266 6 Transmissivity %/metre 85.4 88 7 Fluorescence:URU:Seapoint mg/m^3 0.47E-01 1.306 8 Salinity:T1:C1 PSS-78 32.0164 34.0533 9 Oxygen:Dissolved:SBE mL/L 0.97 6.07 10 Oxygen:Dissolved:SBE umol/kg 42.2 264.5 11 Conductivity:Secondary S/m 3.32269 3.92953 12 Number_of_bin_records n/a 241 241 13 Sample_Number n/a 11 22 14 Temperature:Draw 'deg C (ITS90)' 8.2 17.1 15 Salinity:Bottle PSS-78 32.0191 34.0524 16 Flag:Salinity:Bottle n/a 17 Chlorophyll:Extracted mg/m^3 0.51 0.68 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 0.24 0.33 20 Oxygen:Dissolved mL/L 0.963 6.062 21 Oxygen:Dissolved umol/kg 41.89727 264.2581 22 Flag:Oxygen:Dissolved n/a 23 Nitrate_plus_Nitrite umol/L 0 0 24 Flag:Nitrate_plus_Nitrite n/a 25 Silicate umol/L 3.69 3.69 26 Flag:Silicate n/a 27 Phosphate umol/L 0.412 0.412 28 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 -99 ' ' 10 F ' ' 5 12 -99 ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 6 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 8 F R4 3 28 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-028 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Juvenile Salmon SCIENTIST : Tabata A. PLATFORM : Sir John Franklin *LOCATION GEOGRAPHIC AREA : Johnstone Strait, Juan de Fuca Strait, WCVI, NCVI STATION : VI07 EVENT NUMBER : 42 LATITUDE : 49 6.01000 N ! (deg min) LONGITUDE : 126 57.77000 W ! (deg min) WATER DEPTH : 483 ALTIMETER (M) : 7.84 ! custom item *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 5606 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2374 Conductivity ' ' 4448 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 4883 Conductivity:2 ' ' 4434 'Oxygen:SBE 43' ' ' 0997 Fluorometer:Seapoint ' ' 3949 'Transmissometer:WET Labs C-Star' ' ' 983DR Altimeter ' ' 75321 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- DATCNV 1.0 2026/07/16 10:18:22 2892 2892 OXYGEN 1.0 2026/07/16 10:18:22 2892 2892 AV1 1.0 2026/07/16 10:18:22 2892 12 ADDSAMP 1.0 2026/07/16 10:18:25 12 12 RENAME 1.0 2026/07/16 10:18:25 12 12 MERGE 1.0 2026/07/16 10:18:26 12 12 CALIB 12.1 2026/08/11 10:11:27 12 12 SORT 3.6 2026/08/11 10:12:15 12 12 REMOVECH 8.2 2026/08/11 10:12:55 12 12 CHGUNITS 3.2 2026/08/11 10:16:54 12 12 CHGUNITS 3.2 2026/08/11 10:21:41 12 12 REORDER 1.3.1 2026/08/11 10:23:05 ? ? HDREDIT2 3.2 2026/08/11 10:47:39 ? ? $END $REMARKS -DATCNV: 2026/07/16 10:18:22 Converted raw CTD cast (.hex) to .ros format. Output contained 2892 records with instrument channels. -CONVERT OXYGEN: 2026/07/16 10:18:22 Converted Oxygen data from Voltage to ml/L and umol/Kg Output contained 2892 records of Oxygen data -AV1: 2026/07/16 10:18:22 Averaged CTD data around each bottle position. Channel 'Number_of_bin_records' was added to file. Records reduced from 2892 to 12 (one row per bottle). -ADDSAMP: 2026/07/16 10:18:25 Merge Sample numbers assigned from Compiled Rosette Sheets into AV1 Niskin# column renamed to bottle position for consistency with AV1. 12 AV1 records successfully annotated with Sample_Number. -RENAME: 2026/07/16 10:18:25 Standardized and reordered channel names for CHE output. 16 Columns renamed and reordered successfully -MERGE: 2026/07/16 10:18:26 Merged Lab chemistry data into AV1 output. Merge key: Sample_Number Merge Scheme Used: Add Secondary to Matching Primary Primary Channels to Include: ALL Secondary Channels to Include: Station Salinity:Bottle Flag:Salinity:Bottle Station_CHL Chlorophyll:Extracted Flag:Chlorophyll:Extracted Phaeo-Pigment:Extracted Station_OXY Oxygen:Dissolved Flag:Oxygen:Dissolved Temperature:Draw Station_NUTS Depth_NUTS Nitrate_plus_Nitrite Flag:Nitrate_plus_Nitrite Silicate Flag:Silicate Phosphate Flag:Phosphate 12 secondary lab records matched to primary records. -CALIB parameters: 2026/08/11 10:11:27 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-028\Processing\doc\2024-028-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.3200000E-01 0.1045000E+01 -SORT parameters: 2026/08/11 10:12:15 Sorted in ascending order of channel Pressure -REMOVECH 2026/08/11 10:12:55 The following CHANNEL(S) were removed: Temperature:Primary [deg C (ITS90)] Salinity:T0:C0 [PSS-78] Conductivity:Primary [S/m] -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2026/08/11 10:47:39 Applied edit header: E:\Telework\2024-028\Processing\doc\HYDRO\2024-028-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 14: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 Channel 20: Oxygen:Dissolved [mL/L] Format: F7.2 ==> F8.3 Channel 7: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint $END *COMMENTS Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2024-028/lab_data/2024-028_SAL.csv ------------------------------------------------------- Sample_Number 14: SAL: poor agreement between replicates. Needs further evaluation. Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2024-028/lab_data/2024-028_CHL.csv ------------------------------------------------------- Sample_Number 18: CHL: sample lost - not found at time of analysis. Comments from secondary file: C:/Users/BEDARDJ/Desktop/Data_Processing/bottle_data/2024-028/lab_data/2024-028_OXY.csv ------------------------------------------------------- Sample_Number 14: OXY: outlier from expected oxygen profile. Sample_Number 13: OXY: milky bubble in flask. Sample_Number 11: OXY: milky bubble in flask. ---------------------------------------------------------------------------------------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 6 weeks after the collection on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-028_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Salinity samples were collected in 200 mL or 250mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 12-21 days after collection. For details see document QF2024-028_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-028_NUTS*.xlsx. Oxygen samples were analyzed at IOS in lab 1409 using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365 nm filter controlled by LVO2_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details, see document QF2024-028_OXY*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers ---------------------------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Fluorescence and Transmissivity data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on the processing see the report: 2024-028_Processing_Report.doc. ---------------------------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.32E-01 1.045) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- ---8---- --9--- --10- ----11--- -12- -13- --14- ---15--- 16 --17-- 18 --19-- ---20-- --21- 22 --23-- 24 --25-- 26 ---27-- 28 !Bo Bo Pressu Depth Temperat Trans Fluores Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: :T1:C1 : n: ity: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Secondar vity URU: Dissol Disso Secondary ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en y Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ------- -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 12 12 3.1 3.0 14.6262 85.4 1.297 32.0217 5.90 257.4 3.92934 241 22 17.1 32.0229 0 0.68 0 0.31 5.930 258.8 0 0.00 0 3.69 0 0.412 0 11 11 6.1 6.0 14.6266 85.4 1.306 32.0215 5.92 258.3 3.92947 241 21 17.0 32.0240 0 0.68 0 0.33 5.930 258.7 0 -99.00 0 -99.00 0 -99.000 0 10 10 10.3 10.2 14.6253 85.4 1.293 32.0214 5.92 258.3 3.92953 241 20 17.0 32.0235 0 0.68 6 0.32 5.930 258.8 0 -99.00 0 -99.00 0 -99.000 0 9 9 25.1 24.9 14.4082 86.1 1.100 32.0164 5.93 258.7 3.90989 241 19 16.7 32.0191 0 0.51 0 0.24 5.940 259.1 0 -99.00 0 -99.00 0 -99.000 0 8 8 50.1 49.7 9.8345 87.5 0.337 32.3153 6.07 264.5 3.53293 241 18 12.1 32.3129 0 -99.00 1 -99.00 6.060 264.3 0 -99.00 0 -99.00 0 -99.000 0 7 7 75.5 74.8 8.0275 87.8 0.144 32.7399 5.12 223.0 3.41578 241 17 10.7 32.7403 0 -99.00 0 -99.00 5.100 222.3 0 -99.00 0 -99.00 0 -99.000 0 6 6 99.9 99.0 7.7354 87.8 0.081 33.3149 3.81 165.8 3.44479 241 16 10.1 33.3192 0 -99.00 0 -99.00 3.760 163.8 6 -99.00 0 -99.00 0 -99.000 0 5 5 149.5 148.2 7.2583 87.4 0.050 33.8078 2.07 90.1 3.44994 241 15 9.6 33.8092 0 -99.00 0 -99.00 2.070 90.0 0 -99.00 0 -99.00 0 -99.000 0 4 4 201.1 199.3 6.7793 87.9 0.050 33.8945 2.43 105.7 3.41720 241 14 9.1 33.8948 46 -99.00 0 -99.00 2.400 104.5 3 -99.00 0 -99.00 0 -99.000 0 3 3 300.3 297.5 6.1334 88.0 0.049 33.9625 1.69 73.5 3.36999 241 13 8.6 33.9629 0 -99.00 0 -99.00 1.680 73.3 4 -99.00 0 -99.00 0 -99.000 0 2 2 400.4 396.6 5.6420 87.3 0.048 34.0229 1.17 50.9 3.33602 241 12 8.2 34.0222 0 -99.00 0 -99.00 1.160 50.6 0 -99.00 0 -99.00 0 -99.000 0 1 1 477.9 473.3 5.4235 86.7 0.047 34.0533 0.97 42.2 3.32269 241 11 8.2 34.0524 0 -99.00 0 -99.00 0.960 41.9 4 -99.00 0 -99.00 0 -99.000 0