*2025/08/07 16:20:22.71 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/06/30 19:06:58.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 18 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 9771272C NUMBER OF CHANNELS : 31 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 18 2 Bottle:Firing_Sequence n/a 1 18 3 Pressure decibar 1.02 370.79 4 Depth metres 1.012 367.312 5 Temperature:Primary 'deg C (ITS90)' 9.0574 15.7238 6 Transmissivity %/metre 22.7 61.9 7 Fluorescence:URU:Seapoint mg/m^3 0.159 3.377 8 PAR uE/m^2/sec 0 1803.299 9 PAR:Reference uE/m^2/sec 1471.173 2747.498 10 pH:SBE:Nominal n/a 8.471 9.177 11 Salinity:T0:C0 PSS-78 25.0934 31.1638 12 Oxygen:Dissolved:SBE mL/L 3.538 6.791 13 Oxygen:Dissolved:SBE umol/kg 154.3 297.9 14 Conductivity:Primary S/m 3.222131 3.384397 15 Number_of_bin_records n/a 204 241 16 Sample_Number n/a 139 156 17 Temperature:Draw 'deg C (ITS90)' 10.2 17.5 18 Salinity:Bottle PSS-78 31.123 31.123 19 Flag:Salinity:Bottle n/a 20 Chlorophyll:Extracted mg/m^3 0.62 8.32 21 Flag:Chlorophyll:Extracted n/a 22 Phaeo-Pigment:Extracted mg/m^3 0.6 2.29 23 Oxygen:Dissolved mL/L 3.595 7.502 24 Oxygen:Dissolved umol/kg 156.8236 329.1721 25 Flag:Oxygen:Dissolved n/a 26 Nitrate_plus_Nitrite umol/L 0.28 30.09 27 Flag:Nitrate_plus_Nitrite n/a 28 Silicate umol/L 23.2 55.6 29 Flag:Silicate n/a 30 Phosphate umol/L 0.306 2.589 31 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 8 F ' ' 3 11 -99 ' ' 9 F ' ' 4 12 -99 ' ' 7 F ' ' 2 13 -99 ' ' 6 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 6 F R4 1 18 -99 ' ' 9 F R4 4 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 -99 ' ' 8 F R4 3 24 -99 ' ' 6 F ' ' 1 25 n/a ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 7 F R4 2 29 0 ' ' 3 NQ C ' ' 30 -99 ' ' 8 F R4 3 31 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-007 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Du Preez C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 39 EVENT NUMBER : 47 LATITUDE : 49 9.86000 N ! (deg min) LONGITUDE : 123 32.97000 W ! (deg min) WATER DEPTH : 377 ALTIMETER (M) : 5.18 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2128 'Oxygen:SBE 43' ' ' 1176 Fluorometer:Seapoint ' ' 3950 Altimeter ' ' 73171 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' 4565 'Transmissometer:WET Labs C-Star' ' ' 1201DR Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/07/29 15:38:25 4301 4301 CLEAN 5.3 2025/07/29 15:38:38 4301 4301 ADDSAMP 3.6 2025/07/29 16:16:30 4301 4301 BINAVE 4.2.1 2025/07/29 16:17:06 4301 18 MERGE 3.6 2025/07/31 09:16:04 18 18 CLEAN 5.3 2025/07/31 09:16:10 18 18 CALIB 12.1 2025/07/31 16:12:24 18 18 CALIB 12.1 2025/08/07 15:15:20 18 18 SORT 3.6 2025/08/07 16:16:29 18 18 REMOVECH 8.2 2025/08/07 16:16:58 18 18 CHGUNITS 3.2 2025/08/07 16:17:57 18 18 CHGUNITS 3.2 2025/08/07 16:18:02 18 18 REORDER 1.3.1 2025/08/07 16:18:35 ? ? HDREDIT2 3.2 2025/08/07 16:20:22 ? ? $END $REMARKS -CLEAN functions: 2025/07/29 15:38:34 20 Reset #RECS, MIN & MAX values in header. Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-007\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2025/07/31 09:16:04 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : E:\Telework\2024-007\Processing\hydro\2024-007-0047.samavg Secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0047.mrgcln1s 18 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0047.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2025/07/30 13:57:50 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2025/07/31 09:16:09 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2025/07/31 16:12:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal-SIL.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 35 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T0:C0 -CALIB parameters: 2025/08/07 15:15:20 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.2000000E+00 0.1000000E+01 5 Depth:Salt_Water metres 10 -0.2000000E+00 0.1000000E+01 19 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 20 Salinity:T1:C1 PSS-78 10 -0.3400000E-02 0.1000000E+01 21 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1055000E+01 -SORT parameters: 2025/08/07 16:16:29 Sorted in ascending order of channel Pressure -REMOVECH 2025/08/07 16:16:58 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2025/08/07 16:20:22 Applied edit header: E:\Telework\2024-007\Processing\doc\HYDRO\2024-007-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 12: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 17: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 19: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 20: Chlorophyll:Extracted [mg/m^3] Units: PSS-78 ==> mg/m^3 Channel 21: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 22: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 23: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 24: Oxygen:Dissolved [umol/kg] Format: F7.2 ==> F6.1 Channel 25: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Pad: 0 ==> n/a Channel 27: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 29: Flag:Silicate [n/a] Units: ==> n/a Channel 31: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR [uE/m^2/sec] Units: umol/m^2/sec ==> uE/m^2/sec Format: F11.3 ==> F7.1 Channel 9: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 14: Conductivity:Primary [S/m] Format: F11.6 ==> F10.5 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0047.mrgcln1s ------------------------------------------------------------ Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0047.oxy ------------------------------------------------------- Sample_Number 145: OXY: sample overtitrated due to late endpoint, OT looks good. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed less than 1 week after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-007_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-007_OXY*.xlsx. Salinity samples were collected in 200mL or 250mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 6-10 days after collection. For details see document QF2024-007_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-007nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers ---------------------------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Fluorescence and Transmissivity data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on the processing see the report: 2024-007_Processing_Report.doc. ---------------------------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Silicate umol/L 120 -99 (Salinity:T0:C0) (0.904 0.3E-02 25) Pressure decibar 10 -99 () (-0.2 1) Depth:Salt_Water metres 10 -99 () (-0.2 1) Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.34E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.055) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- --8--- --9--- ---10-- ---11--- --12-- --13- ----14--- -15- -16- --17- ---18--- 19 --20-- 21 --22-- ---23-- --24- 25 --26-- 27 --28-- 29 ---30-- 31 !Bo Bo Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: Refere Nominal :T0:C0 : n: ity: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity URU: nce Dissol Disso Primary ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 18 18 1.0 1.0 15.5602 27.4 2.369 1557.4 2678.3 9.160 25.0934 6.79 297.9 3.22213 241 156 -99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 17 17 1.1 1.1 15.7238 22.7 2.114 1803.3 2679.0 9.177 25.1028 6.72 294.7 3.23535 204 155 17.5 -99.0000 0 8.32 6 2.29 7.502 329.2 0 0.28 0 29.34 0 0.306 0 16 16 4.7 4.6 14.7953 29.3 3.377 446.8 2710.1 9.087 26.7751 6.59 288.8 3.35783 241 154 16.0 -99.0000 0 5.69 0 1.52 6.748 295.6 0 1.82 0 23.20 0 0.602 0 15 15 10.1 10.0 12.9386 48.8 1.552 54.2 2729.8 8.948 28.1618 5.95 260.4 3.36486 241 153 13.5 -99.0000 0 1.69 0 0.91 5.922 259.0 0 9.39 6 30.52 6 1.232 6 14 14 19.9 19.7 11.0988 58.3 0.844 10.0 2706.2 8.732 29.3635 4.86 212.3 3.34266 241 152 11.8 -99.0000 0 0.62 0 0.60 4.733 206.8 0 19.68 0 39.34 0 2.005 0 13 13 30.0 29.7 10.4683 61.5 0.338 2.8 2661.4 8.642 29.6552 4.42 192.9 3.32102 241 151 11.4 -99.0000 0 -99.00 0 -99.00 4.407 192.5 6 22.93 0 43.51 0 2.211 0 12 12 40.0 39.7 10.1140 61.9 0.219 0.9 2631.2 8.590 29.7810 4.20 183.5 3.30494 241 150 11.0 -99.0000 0 -99.00 0 -99.00 4.202 183.5 0 25.00 0 47.36 0 2.328 0 11 11 50.1 49.6 9.7518 61.5 0.190 0.3 2629.8 8.544 29.8720 4.04 176.4 3.28461 241 149 10.7 -99.0000 0 -99.00 0 -99.00 4.168 182.0 0 27.45 0 51.67 0 2.467 0 10 10 75.0 74.3 9.0574 61.6 0.163 0.0 2692.8 8.471 30.0762 3.81 166.2 3.24857 241 148 10.2 -99.0000 0 -99.00 0 -99.00 3.842 167.7 0 30.09 0 55.60 0 2.589 0 9 9 100.0 99.1 9.1574 59.8 0.159 0.0 2242.4 8.552 30.3240 4.03 175.8 3.28203 241 147 10.4 -99.0000 0 -99.00 0 -99.00 4.039 176.3 0 27.44 0 47.52 0 2.371 0 8 8 125.0 123.9 9.3461 55.4 0.163 0.0 2218.9 8.571 30.5555 3.92 170.9 3.32144 241 146 10.6 -99.0000 0 -99.00 0 -99.00 3.946 172.2 0 26.71 6 47.92 6 2.330 6 7 7 150.0 148.7 9.4750 53.4 0.170 0.0 1969.9 8.600 30.7538 3.94 171.8 3.35275 241 145 10.6 -99.0000 0 -99.00 0 -99.00 3.952 172.4 2 26.11 0 47.24 0 2.270 0 6 6 175.1 173.5 9.4092 54.7 0.169 0.0 1471.2 8.592 30.8165 3.90 170.1 3.35439 241 144 10.7 -99.0000 0 -99.00 0 -99.00 3.922 171.1 0 26.38 0 48.61 0 2.292 0 5 5 199.9 198.1 9.3561 55.9 0.162 0.0 2002.4 8.569 30.8721 3.76 164.1 3.35638 241 143 10.7 -99.0000 0 -99.00 0 -99.00 3.790 165.4 0 26.55 0 50.54 0 2.346 0 4 4 250.0 247.7 9.3766 54.0 0.168 0.0 2747.5 8.568 30.9622 3.73 162.6 3.36901 241 142 10.7 -99.0000 0 -99.00 0 -99.00 3.750 163.6 0 26.69 0 48.45 0 2.346 0 3 3 300.0 297.2 9.3237 49.7 0.171 0.0 2651.1 8.552 31.0605 3.62 157.9 3.37622 241 141 10.9 -99.0000 0 -99.00 0 -99.00 3.650 159.2 6 27.13 0 51.49 0 2.413 0 2 2 349.9 346.7 9.2879 44.7 0.181 0.0 2582.1 8.546 31.1269 3.56 155.5 3.38173 241 140 10.9 31.1230 6 -99.00 0 -99.00 3.595 156.8 0 27.23 0 52.39 0 2.467 0 1 1 370.8 367.3 9.2668 38.7 0.189 0.0 2552.6 8.545 31.1638 3.54 154.3 3.38440 241 139 11.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 5 27.30 0 53.19 0 2.505 0