*2025/08/07 16:20:22.66 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/06/30 14:11:21.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 5DE54FBF NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 17 2 Bottle:Firing_Sequence n/a 1 17 3 Pressure decibar 1.28 313.6 4 Depth metres 1.265 310.7 5 Temperature:Primary 'deg C (ITS90)' 8.9438 16.3137 6 Transmissivity %/metre 4.4 61.9 7 Fluorescence:URU:Seapoint mg/m^3 0.157 2.061 8 PAR uE/m^2/sec 0 202.044 9 PAR:Reference uE/m^2/sec 597.879 729.954 10 pH:SBE:Nominal n/a 8.486 9.203 11 Salinity:T0:C0 PSS-78 9.613 31.0626 12 Oxygen:Dissolved:SBE mL/L 3.464 6.969 13 Oxygen:Dissolved:SBE umol/kg 151.1 307.8 14 Conductivity:Primary S/m 1.361783 3.38794 15 Number_of_bin_records n/a 191 241 16 Sample_Number n/a 122 138 17 Temperature:Draw 'deg C (ITS90)' 10.45 17.5 18 Chlorophyll:Extracted mg/m^3 0.35 3.55 19 Flag:Chlorophyll:Extracted n/a 20 Phaeo-Pigment:Extracted mg/m^3 0.42 1.2 21 Oxygen:Dissolved mL/L 3.516 7.007 22 Oxygen:Dissolved umol/kg 153.3875 307.1684 23 Flag:Oxygen:Dissolved n/a 24 Nitrate_plus_Nitrite umol/L 0.65 29.21 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 32.76 69.23 27 Flag:Silicate n/a 28 Phosphate umol/L 0.336 2.622 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 8 F ' ' 3 11 -99 ' ' 9 F ' ' 4 12 -99 ' ' 7 F ' ' 2 13 -99 ' ' 6 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 6 F R4 1 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 n/a ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-007 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Du Preez C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 42 EVENT NUMBER : 42 LATITUDE : 49 1.80000 N ! (deg min) LONGITUDE : 123 26.13000 W ! (deg min) WATER DEPTH : 318 ALTIMETER (M) : 5.01 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2128 'Oxygen:SBE 43' ' ' 1176 Fluorometer:Seapoint ' ' 3950 Altimeter ' ' 73171 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' 4565 'Transmissometer:WET Labs C-Star' ' ' 1201DR Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/07/29 15:38:24 4047 4047 CLEAN 5.3 2025/07/29 15:38:38 4047 4047 ADDSAMP 3.6 2025/07/29 16:16:29 4047 4047 BINAVE 4.2.1 2025/07/29 16:17:06 4047 17 MERGE 3.6 2025/07/31 09:16:04 17 17 CLEAN 5.3 2025/07/31 09:16:10 17 17 CALIB 12.1 2025/07/31 16:12:24 17 17 CALIB 12.1 2025/08/07 15:15:20 17 17 SORT 3.6 2025/08/07 16:16:29 17 17 REMOVECH 8.2 2025/08/07 16:16:58 17 17 CHGUNITS 3.2 2025/08/07 16:17:57 17 17 CHGUNITS 3.2 2025/08/07 16:18:02 17 17 REORDER 1.3.1 2025/08/07 16:18:35 ? ? HDREDIT2 3.2 2025/08/07 16:20:22 ? ? $END $REMARKS -CLEAN functions: 2025/07/29 15:38:34 20 Reset #RECS, MIN & MAX values in header. Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-007\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2025/07/31 09:16:04 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : E:\Telework\2024-007\Processing\hydro\2024-007-0042.samavg Secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.mrgcln1s 17 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2025/07/30 13:57:50 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2025/07/31 09:16:09 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2025/07/31 16:12:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal-SIL.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 33 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T0:C0 -CALIB parameters: 2025/08/07 15:15:20 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.2000000E+00 0.1000000E+01 5 Depth:Salt_Water metres 10 -0.2000000E+00 0.1000000E+01 19 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 20 Salinity:T1:C1 PSS-78 10 -0.3400000E-02 0.1000000E+01 21 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1055000E+01 -SORT parameters: 2025/08/07 16:16:29 Sorted in ascending order of channel Pressure -REMOVECH 2025/08/07 16:16:58 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2025/08/07 16:20:22 Applied edit header: E:\Telework\2024-007\Processing\doc\HYDRO\2024-007-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 12: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 17: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 18: Chlorophyll:Extracted [mg/m^3] Units: PSS-78 ==> mg/m^3 Channel 19: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 21: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Oxygen:Dissolved [umol/kg] Format: F7.2 ==> F6.1 Channel 23: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Pad: 0 ==> n/a Channel 25: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 27: Flag:Silicate [n/a] Units: ==> n/a Channel 29: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR [uE/m^2/sec] Units: umol/m^2/sec ==> uE/m^2/sec Format: F11.3 ==> F7.1 Channel 9: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 14: Conductivity:Primary [S/m] Format: F11.6 ==> F10.5 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.mrgcln1s ------------------------------------------------------------ Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.chl ------------------------------------------------------- Sample_Number 136: CHL: %CV>10 Sample_Number 138: CHL: sediment on filter. Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.oxy ------------------------------------------------------- Sample_Number 124: OXY: replicate outlier as determined via the Chauvenet criteria. Sample_Number 130: OXY-1: late endpoint, adjusted with O2Check. Sample_Number 132: ALL: Niskin leaking from bottom seal. Sample_Number 135: OXY: bubbles from NaI-NaOH dispenser. Sample_Number 136: OXY: bubbles from NaI-NaOH dispenser. Sample_Number 137: OXY: bubbles from NaI-NaOH dispenser, sediment in water surpressing end voltage to 1.9V. Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0042.nut ------------------------------------------------------- Sample_Number 132: NUTS: Sample intended as duplicate, however, only one sample processed, sample B cracked and contaminated Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed less than 1 week after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-007_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-007_OXY*.xlsx. Salinity samples were collected in 200mL or 250mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 6-10 days after collection. For details see document QF2024-007_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-007nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers ---------------------------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Fluorescence and Transmissivity data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on the processing see the report: 2024-007_Processing_Report.doc. ---------------------------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Silicate umol/L 120 -99 (Salinity:T0:C0) (0.904 0.3E-02 25) Pressure decibar 10 -99 () (-0.2 1) Depth:Salt_Water metres 10 -99 () (-0.2 1) Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.34E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.055) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- --8--- --9--- ---10-- ---11--- --12-- --13- ----14--- -15- -16- --17- --18-- 19 --20-- ---21-- --22- 23 --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: Refere Nominal :T0:C0 : n: ity: er_o le_ ratur phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity URU: nce Dissol Disso Primary ~bin Numb e: Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Seapoin ved: lved: _rec er Draw ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords ed ted ed e te te te !-- -- ------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- --------- ---- ---- ----- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 16 16 1.3 1.3 16.2936 4.4 1.885 191.7 721.9 9.189 9.6130 6.93 307.5 1.36178 191 137 17.2 -99.00 0 -99.00 6.910 306.7 4 -99.00 0 -99.00 0 -99.000 0 17 17 1.3 1.3 16.3137 5.0 2.030 202.0 730.0 9.203 10.3226 6.94 307.8 1.45498 241 138 -99.0 1.61 2 0.60 -99.000 -99.0 0 4.91 0 69.23 0 0.539 0 15 15 5.2 5.1 15.8351 44.6 2.061 13.3 679.5 9.160 26.3358 6.97 305.4 3.38794 241 136 17.5 3.55 36 1.20 7.007 307.2 4 0.65 0 32.76 0 0.336 0 14 14 10.3 10.2 11.6331 57.8 0.722 3.6 693.0 8.798 28.9634 5.15 225.1 3.34449 241 135 13.0 0.71 0 0.56 5.191 226.9 4 13.38 0 33.98 0 1.589 0 13 13 20.4 20.3 10.8317 59.1 0.408 0.6 677.2 8.706 29.4585 4.79 209.4 3.33051 241 134 11.0 0.35 0 0.42 4.739 207.0 0 20.35 0 39.90 0 2.042 0 12 12 30.2 29.9 10.2486 60.5 0.242 0.2 660.2 8.615 29.6818 4.39 191.8 3.30565 241 133 11.0 -99.00 0 -99.00 4.437 193.8 0 24.32 0 45.67 0 2.300 0 11 11 40.4 40.0 9.6322 61.9 0.180 0.1 648.5 8.524 29.8268 4.04 176.3 3.26990 241 132 11.0 -99.00 0 -99.00 4.033 176.1 3 28.06 3 52.17 3 2.544 3 10 10 50.4 50.0 9.3893 61.8 0.171 0.0 637.6 8.489 29.9094 3.89 169.7 3.25852 241 131 10.7 -99.00 0 -99.00 3.892 169.9 0 29.21 0 54.78 0 2.622 0 9 9 74.9 74.2 8.9438 61.2 0.160 0.0 627.3 8.486 30.1146 3.98 173.6 3.24295 241 130 10.4 -99.00 0 -99.00 4.008 175.0 26 29.19 0 52.07 0 2.540 0 8 8 100.1 99.3 9.3060 58.1 0.160 0.0 623.1 8.564 30.4284 4.00 174.7 3.30461 241 129 10.7 -99.00 0 -99.00 4.022 175.5 0 26.69 0 45.16 0 2.338 0 7 7 125.2 124.1 9.2765 55.1 0.161 0.0 622.8 8.530 30.6101 3.73 162.9 3.32096 241 128 10.8 -99.00 0 -99.00 3.758 164.0 0 27.46 0 50.40 0 2.497 0 6 6 150.1 148.8 9.2854 52.1 0.158 0.0 616.0 8.544 30.7876 3.70 161.4 3.34011 241 127 10.8 -99.00 0 -99.00 3.721 162.4 0 27.02 0 52.18 0 2.489 0 5 5 175.5 173.9 9.3202 56.4 0.158 0.0 597.9 8.554 30.8793 3.73 162.5 3.35306 241 126 10.9 -99.00 0 -99.00 3.724 162.5 0 26.86 6 52.28 6 2.377 6 4 4 200.0 198.2 9.3544 55.7 0.157 0.0 616.3 8.531 30.9354 3.56 155.2 3.36246 241 125 10.9 -99.00 0 -99.00 3.581 156.2 0 27.00 0 53.99 0 2.521 0 3 3 250.1 247.8 9.3439 45.7 0.164 0.0 624.0 8.520 31.0058 3.46 151.1 3.37052 241 124 11.1 -99.00 0 -99.00 3.542 154.5 46 27.32 0 56.81 0 2.570 0 2 2 300.6 297.8 9.3219 30.6 0.176 0.0 619.6 8.530 31.0626 3.48 151.8 3.37630 241 123 11.0 -99.00 0 -99.00 3.516 153.4 0 27.16 0 55.42 0 2.577 0 1 1 313.6 310.7 9.3236 30.7 0.179 0.0 599.5 8.530 31.0625 3.49 152.2 3.37695 241 122 11.1 -99.00 0 -99.00 3.524 153.7 0 27.15 0 55.37 0 2.582 0