*2025/08/07 16:20:22.18 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/06/29 05:15:52.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 38E18A6C NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 11 2 Bottle:Firing_Sequence n/a 1 11 3 Pressure decibar 1.15 119.04 4 Depth metres 1.142 117.998 5 Temperature:Primary 'deg C (ITS90)' 7.0317 10.2921 6 Transmissivity %/metre 41.3 53.5 7 Fluorescence:URU:Seapoint mg/m^3 0.327 0.749 8 PAR uE/m^2/sec 0 7.524 9 PAR:Reference uE/m^2/sec 0 0 10 pH:SBE:Nominal n/a 8.458 8.731 11 Salinity:T0:C0 PSS-78 31.223 33.5904 12 Oxygen:Dissolved:SBE mL/L 1.921 4.838 13 Oxygen:Dissolved:SBE umol/kg 83.6 211 14 Conductivity:Primary S/m 3.408346 3.462599 15 Number_of_bin_records n/a 40 241 16 Sample_Number n/a 46 56 17 Temperature:Draw 'deg C (ITS90)' 7.9 11.3 18 Chlorophyll:Extracted mg/m^3 0.89 1.34 19 Flag:Chlorophyll:Extracted n/a 20 Phaeo-Pigment:Extracted mg/m^3 0.74 0.92 21 Oxygen:Dissolved mL/L 1.928 4.872 22 Oxygen:Dissolved umol/kg 83.90762 212.5287 23 Flag:Oxygen:Dissolved n/a 24 Nitrate_plus_Nitrite umol/L 21.53 34.35 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 38.95 54.42 27 Flag:Silicate n/a 28 Phosphate umol/L 1.967 2.582 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 8 F ' ' 3 11 -99 ' ' 9 F ' ' 4 12 -99 ' ' 7 F ' ' 2 13 -99 ' ' 6 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 6 F R4 1 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 n/a ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-007 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Du Preez C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : ADCP EVENT NUMBER : 13 LATITUDE : 48 14.02000 N ! (deg min) LONGITUDE : 123 17.88000 W ! (deg min) WATER DEPTH : 122 ALTIMETER (M) : 5.25 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2128 'Oxygen:SBE 43' ' ' 1176 Fluorometer:Seapoint ' ' 3950 Altimeter ' ' 73171 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' 4565 'Transmissometer:WET Labs C-Star' ' ' 1201DR Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/07/29 15:38:22 2450 2450 CLEAN 5.3 2025/07/29 15:38:36 2450 2450 ADDSAMP 3.6 2025/07/29 16:16:27 2450 2450 BINAVE 4.2.1 2025/07/29 16:17:05 2450 11 MERGE 3.6 2025/07/31 09:16:04 11 11 CLEAN 5.3 2025/07/31 09:16:09 11 11 CALIB 12.1 2025/07/31 16:12:24 11 11 CALIB 12.1 2025/08/07 15:15:20 11 11 SORT 3.6 2025/08/07 16:16:29 11 11 REMOVECH 8.2 2025/08/07 16:16:58 11 11 CHGUNITS 3.2 2025/08/07 16:17:57 11 11 CHGUNITS 3.2 2025/08/07 16:18:02 11 11 REORDER 1.3.1 2025/08/07 16:18:35 ? ? HDREDIT2 3.2 2025/08/07 16:20:22 ? ? $END $REMARKS -CLEAN functions: 2025/07/29 15:38:34 20 Reset #RECS, MIN & MAX values in header. Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-007\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2025/07/31 09:16:04 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : E:\Telework\2024-007\Processing\hydro\2024-007-0013.samavg Secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0013.mrgcln1s 11 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-007\Processing\hydro\2024-007-0013.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2025/07/30 13:57:50 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2025/07/31 09:16:09 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2025/07/31 16:12:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal-SIL.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 33 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T0:C0 -CALIB parameters: 2025/08/07 15:15:20 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-007\Processing\doc\2024-007-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.2000000E+00 0.1000000E+01 5 Depth:Salt_Water metres 10 -0.2000000E+00 0.1000000E+01 19 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 20 Salinity:T1:C1 PSS-78 10 -0.3400000E-02 0.1000000E+01 21 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1055000E+01 -SORT parameters: 2025/08/07 16:16:29 Sorted in ascending order of channel Pressure -REMOVECH 2025/08/07 16:16:58 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2025/08/07 16:20:22 Applied edit header: E:\Telework\2024-007\Processing\doc\HYDRO\2024-007-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 12: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 17: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 18: Chlorophyll:Extracted [mg/m^3] Units: PSS-78 ==> mg/m^3 Channel 19: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 21: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Oxygen:Dissolved [umol/kg] Format: F7.2 ==> F6.1 Channel 23: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Pad: 0 ==> n/a Channel 25: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 27: Flag:Silicate [n/a] Units: ==> n/a Channel 29: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR [uE/m^2/sec] Units: umol/m^2/sec ==> uE/m^2/sec Format: F11.3 ==> F7.1 Channel 9: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 14: Conductivity:Primary [S/m] Format: F11.6 ==> F10.5 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed less than 1 week after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-007_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-007_OXY*.xlsx. Salinity samples were collected in 200mL or 250mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 6-10 days after collection. For details see document QF2024-007_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-007nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers ---------------------------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Fluorescence and Transmissivity data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on the processing see the report: 2024-007_Processing_Report.doc. ---------------------------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Silicate umol/L 120 -99 (Salinity:T0:C0) (0.904 0.3E-02 25) Pressure decibar 10 -99 () (-0.2 1) Depth:Salt_Water metres 10 -99 () (-0.2 1) Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.34E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.055) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- --8--- --9--- ---10-- ---11--- --12-- --13- ----14--- -15- -16- --17- --18-- 19 --20-- ---21-- --22- 23 --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: Refere Nominal :T0:C0 : n: ity: er_o le_ ratur phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity URU: nce Dissol Disso Primary ~bin Numb e: Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Seapoin ved: lved: _rec er Draw ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords ed ted ed e te te te !-- -- ------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- --------- ---- ---- ----- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 10 10 1.1 1.1 10.2921 51.1 0.712 7.5 0.0 8.731 31.2230 4.84 211.0 3.46260 40 55 11.3 -99.00 0 -99.00 4.872 212.5 0 -99.00 0 -99.00 0 -99.000 0 11 11 1.2 1.1 10.2677 51.2 0.749 7.5 0.0 8.729 31.2333 4.79 208.9 3.46153 241 56 -99.0 1.34 0 0.74 -99.000 -99.0 0 21.53 0 38.95 0 1.967 0 9 9 5.0 5.0 10.0612 51.6 0.675 2.0 0.0 8.713 31.3293 4.62 201.6 3.45350 241 54 10.9 1.25 6 0.76 4.647 202.7 0 22.17 0 39.75 0 1.989 0 8 8 9.9 9.9 9.2929 53.3 0.571 0.5 0.0 8.654 31.8340 3.92 170.9 3.43697 241 53 10.0 1.18 0 0.82 4.006 174.6 0 24.41 0 42.21 0 2.095 0 7 7 20.0 19.8 8.7563 53.5 0.472 0.0 0.0 8.613 32.2616 3.49 151.9 3.43201 241 52 10.5 0.89 0 0.92 3.573 155.7 0 26.31 0 44.41 0 2.188 0 6 6 30.0 29.8 8.6360 53.4 0.449 0.0 0.0 8.601 32.3687 3.38 147.3 3.43217 241 51 9.4 -99.00 0 -99.00 3.421 149.1 0 27.06 0 45.21 0 2.218 0 5 5 40.6 40.3 8.3301 53.2 0.409 0.0 0.0 8.575 32.6219 3.14 136.9 3.42991 241 50 9.1 -99.00 0 -99.00 3.220 140.3 0 28.15 0 46.39 0 2.323 0 4 4 50.4 49.9 7.9277 52.3 0.370 0.0 0.0 8.538 32.9298 2.77 120.7 3.42391 241 49 8.9 -99.00 0 -99.00 2.801 122.0 0 30.20 0 48.92 0 2.370 0 3 3 74.9 74.2 7.6215 50.8 0.346 0.0 0.0 8.506 33.1714 2.46 107.0 3.42044 241 48 8.3 -99.00 0 -99.00 2.461 107.1 0 31.88 6 51.39 6 2.444 6 2 2 100.4 99.5 7.0490 42.7 0.327 0.0 0.0 8.458 33.5798 1.94 84.2 3.40835 241 47 7.9 -99.00 0 -99.00 1.949 84.8 0 34.22 0 54.13 0 2.573 0 1 1 119.0 118.0 7.0317 41.3 0.342 0.0 0.0 8.462 33.5904 1.92 83.6 3.40860 241 46 7.9 -99.00 0 -99.00 1.928 83.9 0 34.35 0 54.42 0 2.582 0