*2025/06/12 10:49:10.21 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/04/14 19:24:26.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 757FC5E3 NUMBER OF CHANNELS : 31 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 17 2 Bottle:Firing_Sequence n/a 1 17 3 Pressure decibar 1.55 350.76 4 Depth metres 2.632 348.555 5 Temperature:Primary 'deg C (ITS90)' 8.5794 9.8973 6 Transmissivity %/metre 37.1 57.7 7 Transmissivity:Green %/metre 50.8 86.8 8 Fluorescence:URU:Seapoint mg/m^3 0.5E-01 0.499 9 Fluorescence:URU:Wetlabs mg/m^3 0.23E-01 0.572 10 PAR:Reference uE/m^2/sec 1941.549 2440 11 Salinity:T0:C0 PSS-78 28.3104 30.9785 12 Oxygen:Dissolved:SBE mL/L 2.585 6.612 13 Oxygen:Dissolved:SBE umol/kg 112.8 289 14 Conductivity:Primary S/m 3.101046 3.41889 15 Number_of_bin_records n/a 70 241 16 Sample_Number n/a 264 280 17 Temperature:Draw 'deg C (ITS90)' 9.6 11 18 Salinity:Bottle PSS-78 30.9226 30.9226 19 Flag:Salinity:Bottle n/a 20 Chlorophyll:Extracted mg/m^3 0.52 0.61 21 Flag:Chlorophyll:Extracted n/a 22 Phaeo-Pigment:Extracted mg/m^3 0.2 0.36 23 Oxygen:Dissolved mL/L 2.603 6.593 24 Oxygen:Dissolved umol/kg 113.5608 288.223 25 Flag:Oxygen:Dissolved n/a 26 Nitrate_plus_Nitrite umol/L 16.87 30.54 27 Flag:Nitrate_plus_Nitrite n/a 28 Silicate umol/L 34.73 79.64 29 Flag:Silicate n/a 30 Phosphate umol/L 1.679 2.812 31 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 8 F ' ' 3 10 -99 ' ' 7 F ' ' 1 11 -99 ' ' 9 F ' ' 4 12 -99 ' ' 7 F ' ' 2 13 -99 ' ' 6 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 6 F R4 1 18 -99 ' ' 9 F R4 4 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 -99 ' ' 8 F R4 3 24 -99 ' ' 6 F ' ' 1 25 n/a ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 7 F R4 2 29 0 ' ' 3 NQ C ' ' 30 -99 ' ' 8 F R4 3 31 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-004 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Bluteau C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Juan de Fuca Strait / Strait of Georgia STATION : 12 EVENT NUMBER : 81 LATITUDE : 49 43.61000 N ! (deg min) LONGITUDE : 124 40.88000 W ! (deg min) WATER DEPTH : 357 ALTIMETER (M) : 4.52 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 2754 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 5130 Conductivity:2 ' ' 1766 'Oxygen:SBE 43' ' ' 4372 Fluorometer:Seapoint ' ' 4186 Altimeter ' ' 76341 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-2216 PAR/Irradiance:Biospherical/Licor ' ' 4565 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/05/27 15:23:40 3926 3926 CLEAN 5.3 2025/05/27 15:26:46 3926 3926 ADDSAMP 3.6 2025/05/28 13:21:24 3926 3926 BINAVE 4.2.1 2025/05/28 13:21:31 3926 17 MERGE 3.6 2025/06/03 11:16:32 17 17 CLEAN 5.3 2025/06/10 12:53:07 17 17 CALIB 12.1 2025/06/10 12:54:42 17 17 SORT 3.6 2025/06/10 12:54:50 17 17 REMOVECH 8.2 2025/06/10 12:55:01 17 17 CHGUNITS 3.2 2025/06/10 12:55:13 17 17 CHGUNITS 3.2 2025/06/10 14:10:12 17 17 REORDER 1.3.1 2025/06/12 10:49:01 ? ? HDREDIT2 3.2 2025/06/12 10:49:10 ? ? $END $REMARKS -CLEAN functions: 2025/05/27 15:26:35 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-004\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2025/06/03 11:16:32 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : E:\Telework\2024-004\Processing\hydro\2024-004-0081.samavg Secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0081.mrgcln1s 17 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0081.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2025/05/28 15:27:41 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2025/06/10 12:53:05 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2025/06/10 12:54:42 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-004\Processing\doc\2024-004-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.1100000E+01 0.1000000E+01 20 Salinity:T0:C0 PSS-78 10 -0.1500000E-02 0.1000000E+01 22 Oxygen:Dissolved:SBE mL/L 10 0.6000000E-01 0.9870000E+00 -SORT parameters: 2025/06/10 12:54:50 Sorted in ascending order of channel Pressure -REMOVECH 2025/06/10 12:55:01 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] PAR [umol/m^2/sec] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2025/06/12 10:49:10 Applied edit header: E:\Telework\2024-004\Processing\doc\HYDRO\2024-004-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 12: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 17: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 19: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 20: Chlorophyll:Extracted [mg/m^3] Units: PSS-78 ==> mg/m^3 Channel 21: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 22: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 23: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 24: Oxygen:Dissolved [umol/kg] Format: F7.2 ==> F6.1 Channel 25: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Pad: 0 ==> n/a Channel 27: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 29: Flag:Silicate [n/a] Units: ==> n/a Channel 31: Flag:Phosphate [n/a] Units: ==> n/a Channel 10: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 14: Conductivity:Primary [S/m] Format: F11.6 ==> F10.5 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 9: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0081.mrgcln1s ------------------------------------------------------------ Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0081.oxy ------------------------------------------------------- Sample_Number 264: ALL: Niskin leaking from vent. Sample_Number 277: OXY: Chauvenet replicate outlier, difference between duplicates >0.09 mL/L. Analysis methods: ----------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 3-6 weeks after the collection on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-004_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-004OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 10 - 14 days after collection. For details see document QF2024-004_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-004nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: ---------------------- Conductivity, Transmissivity, Fluorescence and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. A PAR sensor was mounted on the CTD but no data were recorded, so channel PAR was removed from all files. NOTE: While the SBE fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data for this cruise are considered, very roughly, to be: ±0.10 mL/L from 0-100db ±0.05 mL/L from 100db to 300db ±0.03 mL/L below 300db. For details on the processing see document: 2024-004_Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure decibar 10 -99 () (-1.1 1) Salinity:T0:C0 PSS-78 10 -99 () (-0.15E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.6E-01 0.987) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9--- --10-- ---11--- --12-- --13- ----14--- -15- -16- --17- ---18--- 19 --20-- 21 --22-- ---23-- --24- 25 --26-- 27 --28-- 29 ---30-- 31 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Fluores PAR: Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: cence: Refere :T0:C0 : n: ity: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity vity: URU: URU: nce Dissol Disso Primary ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Green Seapoin Wetlabs ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- ------- ------ -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 16 16 1.6 2.6 9.4040 52.1 82.4 0.164 0.023 2186.6 28.3223 6.61 288.7 3.10105 70 279 11.0 -99.0000 0 -99.00 0 -99.00 6.593 288.2 0 -99.00 0 -99.00 0 -99.000 0 17 17 1.6 2.6 9.4305 55.2 82.5 0.157 0.023 2239.5 28.3104 6.61 289.0 3.10195 241 280 -99.0 -99.0000 0 0.52 0 0.20 -99.000 -99.0 0 16.87 0 34.73 0 1.679 0 15 15 4.3 5.4 9.1077 55.2 82.4 0.293 0.131 1967.6 28.5910 6.49 283.5 3.10440 241 278 10.5 -99.0000 0 0.57 6 0.29 6.504 284.3 0 18.38 0 37.35 0 1.780 0 14 14 9.2 10.2 8.9413 52.2 79.7 0.496 0.572 2085.9 28.7918 6.42 280.6 3.11112 241 277 10.1 -99.0000 0 0.61 0 0.34 6.394 279.4 46 20.42 0 41.34 0 1.901 0 13 13 18.8 19.7 8.9118 55.8 83.3 0.499 0.548 1941.5 28.8559 6.24 272.5 3.11544 241 276 10.0 -99.0000 0 0.52 0 0.36 6.223 271.9 0 21.14 0 42.21 0 1.951 0 12 12 29.4 30.2 8.8361 56.6 84.7 0.447 0.469 2036.7 28.8999 6.14 268.2 3.11415 241 275 9.9 -99.0000 0 -99.00 0 -99.00 5.933 259.2 0 22.62 6 45.47 6 2.043 6 11 11 39.5 40.2 8.6597 57.7 86.6 0.169 0.194 2169.1 29.2587 5.25 229.2 3.13535 241 274 9.7 -99.0000 0 -99.00 0 -99.00 5.102 222.8 0 26.94 0 54.18 0 2.348 0 10 10 49.0 49.7 8.5794 57.7 86.8 0.118 0.117 1970.0 29.4831 4.82 210.6 3.15101 241 273 9.6 -99.0000 0 -99.00 0 -99.00 4.783 208.9 0 29.55 0 58.78 0 2.485 0 9 9 74.8 75.3 8.8733 55.8 83.1 0.106 0.119 2065.9 29.8300 4.35 189.7 3.20949 241 272 9.8 -99.0000 0 -99.00 0 -99.00 4.295 187.5 0 30.27 0 60.10 0 2.534 0 8 8 99.3 99.5 9.0439 55.4 82.6 0.079 0.081 2413.3 30.1107 4.03 175.9 3.25179 241 271 9.9 -99.0000 0 -99.00 0 -99.00 4.149 181.1 0 30.54 6 59.42 6 2.516 6 7 7 124.1 124.1 8.9866 54.4 81.1 0.072 0.061 2262.0 30.3066 4.29 187.0 3.26715 241 270 9.9 -99.0000 0 -99.00 0 -99.00 4.278 186.7 0 29.87 0 57.76 0 2.468 0 6 6 149.3 149.1 9.1657 53.9 80.4 0.062 0.053 2122.5 30.4224 3.99 174.1 3.29434 241 269 10.1 -99.0000 0 -99.00 0 -99.00 3.990 174.1 0 30.12 0 59.48 0 2.532 0 5 5 174.2 173.8 9.3294 53.8 79.7 0.061 0.050 2397.5 30.5761 3.77 164.6 3.32405 241 268 10.3 -99.0000 0 -99.00 0 -99.00 3.774 164.7 6 30.04 0 61.11 0 2.557 0 4 4 199.0 198.3 9.4312 53.6 79.4 0.061 0.050 2215.4 30.6616 3.63 158.2 3.34200 241 267 10.4 -99.0000 0 -99.00 0 -99.00 3.637 158.7 0 30.00 0 62.28 0 2.563 0 3 3 249.4 248.2 9.6544 52.1 76.6 0.054 0.043 2392.8 30.7964 3.25 142.0 3.37614 241 266 10.6 -99.0000 0 -99.00 0 -99.00 3.249 141.8 0 30.16 0 64.50 0 2.611 0 2 2 299.4 297.7 9.8163 49.4 71.8 0.050 0.046 2421.0 30.9212 2.89 125.9 3.40422 241 265 10.6 30.9226 6 -99.00 0 -99.00 2.902 126.6 0 30.22 0 70.29 0 2.681 0 1 1 350.8 348.6 9.8973 37.1 50.8 0.052 0.057 2440.0 30.9785 2.58 112.8 3.41889 241 264 10.8 -99.0000 0 -99.00 0 -99.00 2.603 113.6 3 30.16 3 79.64 3 2.812 3