*2025/06/12 10:49:09.66 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2024/04/13 00:38:33.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 15 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 427C24ED NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 15 2 Bottle:Firing_Sequence n/a 1 15 3 Pressure decibar 1.29 195.76 4 Depth metres 2.374 195.102 5 Temperature:Primary 'deg C (ITS90)' 8.8674 8.9003 6 Transmissivity %/metre 18.3 31.3 7 Transmissivity:Green %/metre 24.3 42.8 8 Fluorescence:URU:Seapoint mg/m^3 0.345 0.392 9 Fluorescence:URU:Wetlabs mg/m^3 0.309 0.469 10 PAR:Reference uE/m^2/sec 544.417 1883.488 11 Salinity:T0:C0 PSS-78 30.1277 30.2283 12 Oxygen:Dissolved:SBE mL/L 5.537 5.626 13 Oxygen:Dissolved:SBE umol/kg 241.6 245.5 14 Conductivity:Primary S/m 3.237372 3.252991 15 Number_of_bin_records n/a 241 241 16 Sample_Number n/a 121 135 17 Temperature:Draw 'deg C (ITS90)' 9.7 9.8 18 Chlorophyll:Extracted mg/m^3 0.69 0.71 19 Flag:Chlorophyll:Extracted n/a 20 Phaeo-Pigment:Extracted mg/m^3 1.03 1.4 21 Oxygen:Dissolved mL/L 5.537 5.619 22 Oxygen:Dissolved umol/kg 241.6574 245.2588 23 Flag:Oxygen:Dissolved n/a 24 Nitrate_plus_Nitrite umol/L 21.46 22.15 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 39.78 40.35 27 Flag:Silicate n/a 28 Phosphate umol/L 1.944 2.011 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 8 F ' ' 3 10 -99 ' ' 7 F ' ' 1 11 -99 ' ' 9 F ' ' 4 12 -99 ' ' 7 F ' ' 2 13 -99 ' ' 6 F ' ' 1 14 -99 ' ' 10 F ' ' 5 15 -99 ' ' 5 I I 0 16 -99 ' ' 5 I I 0 17 -99 ' ' 6 F R4 1 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 n/a ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2024-004 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Bluteau C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Juan de Fuca Strait / Strait of Georgia STATION : 56 EVENT NUMBER : 36 LATITUDE : 48 46.45000 N ! (deg min) LONGITUDE : 123 1.65000 W ! (deg min) WATER DEPTH : 207 ALTIMETER (M) : 2.295 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 2754 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 5130 Conductivity:2 ' ' 1766 'Oxygen:SBE 43' ' ' 4372 Fluorometer:Seapoint ' ' 4186 Altimeter ' ' 76341 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-2216 PAR/Irradiance:Biospherical/Licor ' ' 4565 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2025/05/27 15:23:35 3615 3615 CLEAN 5.3 2025/05/27 15:26:43 3615 3615 ADDSAMP 3.6 2025/05/28 13:21:20 3615 3615 BINAVE 4.2.1 2025/05/28 13:21:30 3615 15 MERGE 3.6 2025/06/03 11:16:31 15 15 CLEAN 5.3 2025/06/10 12:53:06 15 15 CALIB 12.1 2025/06/10 12:54:42 15 15 SORT 3.6 2025/06/10 12:54:50 15 15 REMOVECH 8.2 2025/06/10 12:55:01 15 15 CHGUNITS 3.2 2025/06/10 12:55:13 15 15 CHGUNITS 3.2 2025/06/10 14:10:12 15 15 REORDER 1.3.1 2025/06/12 10:49:01 ? ? HDREDIT2 3.2 2025/06/12 10:49:09 ? ? $END $REMARKS -CLEAN functions: 2025/05/27 15:26:35 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -The following ADDSAMP parameters were used: Sample Number Lookup File: E:\Telework\2024-004\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2025/06/03 11:16:31 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : E:\Telework\2024-004\Processing\hydro\2024-004-0036.samavg Secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0036.mrgcln1s 15 secondary records matched to primary records. Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0036.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2025/05/28 15:27:41 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2025/06/10 12:53:05 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. -CALIB parameters: 2025/06/10 12:54:42 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = E:\Telework\2024-004\Processing\doc\2024-004-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.1100000E+01 0.1000000E+01 20 Salinity:T0:C0 PSS-78 10 -0.1500000E-02 0.1000000E+01 22 Oxygen:Dissolved:SBE mL/L 10 0.6000000E-01 0.9870000E+00 -SORT parameters: 2025/06/10 12:54:50 Sorted in ascending order of channel Pressure -REMOVECH 2025/06/10 12:55:01 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] PAR [umol/m^2/sec] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Altimeter [metres] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2025/06/12 10:49:09 Applied edit header: E:\Telework\2024-004\Processing\doc\HYDRO\2024-004-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 12: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 17: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 18: Chlorophyll:Extracted [mg/m^3] Units: PSS-78 ==> mg/m^3 Channel 19: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 21: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Oxygen:Dissolved [umol/kg] Format: F7.2 ==> F6.1 Channel 23: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Pad: 0 ==> n/a Channel 25: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 27: Flag:Silicate [n/a] Units: ==> n/a Channel 29: Flag:Phosphate [n/a] Units: ==> n/a Channel 10: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 14: Conductivity:Primary [S/m] Format: F11.6 ==> F10.5 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 9: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0036.mrgcln1s ------------------------------------------------------------ Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0036.chl ------------------------------------------------------- Sample_Number 135: CHL: jellies on filter. Comments from secondary file: E:\Telework\2024-004\Processing\hydro\2024-004-0036.oxy ------------------------------------------------------- Sample_Number 121: ALL: Niskin leaking from spigot. Sample_Number 122: OXY: sample over-titrated, OT endpoint OK. Analysis methods: ----------------------- Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 3-6 weeks after the collection on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodology, see document QF2024-004_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2024-004OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 10 - 14 days after collection. For details see document QF2024-004_SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2024-004nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: ---------------------- Conductivity, Transmissivity, Fluorescence and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. A PAR sensor was mounted on the CTD but no data were recorded, so channel PAR was removed from all files. NOTE: While the SBE fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data for this cruise are considered, very roughly, to be: ±0.10 mL/L from 0-100db ±0.05 mL/L from 100db to 300db ±0.03 mL/L below 300db. For details on the processing see document: 2024-004_Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure decibar 10 -99 () (-1.1 1) Salinity:T0:C0 PSS-78 10 -99 () (-0.15E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.6E-01 0.987) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9--- --10-- ---11--- --12-- --13- ----14--- -15- -16- --17- --18-- 19 --20-- ---21-- --22- 23 --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Fluores PAR: Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: cence: Refere :T0:C0 : n: ity: er_o le_ ratur phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity vity: URU: URU: nce Dissol Disso Primary ~bin Numb e: Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Green Seapoin Wetlabs ved: lved: _rec er Draw ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- ------- ------ -------- ------ ----- --------- ---- ---- ----- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 14 14 1.3 2.4 8.9003 30.7 42.0 0.345 0.312 1749.2 30.1277 5.62 245.5 3.23763 241 134 9.8 -99.00 0 -99.00 5.619 245.3 0 -99.00 0 -99.00 0 -99.000 0 15 15 1.3 2.4 8.8980 30.8 41.9 0.356 0.309 1740.5 30.1295 5.62 245.4 3.23761 241 135 -99.0 0.69 2 1.03 -99.000 -99.0 0 21.53 0 39.79 0 1.972 0 13 13 4.2 5.3 8.8951 31.3 42.8 0.345 0.325 1732.1 30.1314 5.63 245.5 3.23768 241 133 9.7 0.71 6 1.35 5.613 245.0 0 21.61 0 40.08 0 1.991 0 12 12 9.7 10.7 8.8830 28.5 38.8 0.383 0.399 1728.1 30.1362 5.60 244.5 3.23737 241 132 9.7 0.69 0 1.38 5.590 244.0 0 22.02 0 39.97 0 1.977 0 11 11 19.7 20.6 8.8784 27.5 37.3 0.388 0.420 616.5 30.1478 5.59 244.0 3.23852 241 131 9.7 0.70 0 1.40 5.580 243.5 0 21.62 6 39.88 6 1.944 6 10 10 29.6 30.4 8.8728 27.2 36.7 0.382 0.408 1034.8 30.1531 5.59 243.9 3.23899 241 130 9.7 -99.00 0 -99.00 5.579 243.5 0 21.68 0 40.10 0 2.005 0 9 9 40.0 40.7 8.8739 27.0 36.3 0.367 0.447 544.4 30.1531 5.58 243.5 3.23950 241 129 9.7 -99.00 0 -99.00 5.571 243.2 6 21.75 0 40.11 0 2.000 0 8 8 48.9 49.5 8.8734 26.3 35.6 0.368 0.429 1814.2 30.1472 5.58 243.6 3.23925 241 128 9.7 -99.00 0 -99.00 5.578 243.5 0 21.71 0 40.24 0 2.001 0 7 7 80.5 80.9 8.8829 27.9 37.9 0.372 0.396 1845.3 30.1415 5.59 243.9 3.24077 241 127 9.7 -99.00 0 -99.00 5.580 243.6 0 22.05 0 40.07 0 1.987 0 6 6 96.5 96.8 8.8703 24.4 32.8 0.368 0.391 1883.5 30.1556 5.56 242.8 3.24175 241 126 9.7 -99.00 0 -99.00 5.563 242.8 0 21.81 0 40.35 0 2.011 0 5 5 123.5 123.5 8.8674 24.5 33.1 0.364 0.419 1866.2 30.1744 5.55 242.2 3.24444 241 125 9.7 -99.00 0 -99.00 5.553 242.4 0 22.15 0 39.97 0 1.986 0 4 4 149.9 149.7 8.8680 22.3 29.6 0.359 0.426 1829.5 30.2158 5.54 241.6 3.24958 241 124 9.7 -99.00 0 -99.00 5.547 242.1 6 21.70 0 39.91 0 1.995 0 3 3 174.6 174.1 8.8732 21.8 29.3 0.365 0.419 1843.8 30.2283 5.54 241.7 3.25222 241 123 9.7 -99.00 0 -99.00 5.537 241.7 0 21.72 6 39.82 6 1.948 6 1 1 195.1 194.4 8.8805 18.3 24.3 0.392 0.451 1855.0 30.2206 5.54 241.8 3.25291 241 121 9.7 -99.00 0 -99.00 5.547 242.1 3 21.51 3 39.79 3 1.995 3 2 2 195.8 195.1 8.8808 18.9 24.8 0.377 0.469 1853.4 30.2210 5.54 241.8 3.25299 241 122 9.7 -99.00 0 -99.00 5.571 243.1 2 21.46 0 39.78 0 2.005 0