*2023/04/24 13:26:44.72 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2022/09/13 04:47:21.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 16 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : FDA8C275 NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Position n/a 1 16 2 Bottle_Number n/a 1 16 3 Pressure decibar 2.355 1120.187 4 Depth metres 2.335 1107.93 5 Temperature:Secondary 'deg C (ITS90)' 3.0431 17.946 6 Transmissivity %/metre 51.6 59.8 7 Transmissivity:Green %/metre 81.1 96.9 8 Fluorescence:URU:Seapoint mg/m^3 0.85E-01 1.793 9 Salinity:T1:C1 PSS-78 32.1658 34.4193 10 Oxygen:Dissolved:SBE mL/L 0.263 6.696 11 Oxygen:Dissolved:SBE umol/kg 11.4 291.9 12 Conductivity:Secondary S/m 3.171858 4.251468 13 Number_of_bin_records n/a 241 241 14 Sample_Number n/a 113 128 15 Temperature:Draw 'deg C (ITS90)' 5.2 18.7 16 Salinity:Bottle PSS-78 34.4213 34.4213 17 Flag:Salinity:Bottle ' ' 18 Chlorophyll:Extracted mg/m^3 0.22 0.31 19 Flag:Chlorophyll:Extracted ' ' 20 Phaeo-Pigment:Extracted mg/m^3 0.8E-01 0.1 21 Oxygen:Dissolved mL/L 0.268 6.68 22 Oxygen:Dissolved umol/kg 11.65237 291.2144 23 Flag:Oxygen:Dissolved ' ' 24 Nitrate_plus_Nitrite umol/L 0 46.19 25 Flag:Nitrate_plus_Nitrite ' ' 26 Silicate umol/L 0.92 145.76 27 Flag:Silicate ' ' 28 Phosphate umol/L 0.374 3.354 29 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 10 F ' ' 6 13 ' ' ' ' 5 I I 0 14 -99 ' ' 5 I I 0 15 -99 ' ' 6 F R4 1 16 -99 ' ' 9 F R4 4 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2022-068 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Joint Canada-USA International Seamount Survey SCIENTIST : Rooper C. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : CobbSW2 EVENT NUMBER : 25 LATITUDE : 46 44.50000 N ! (deg min) LONGITUDE : 130 56.13000 W ! (deg min) WATER DEPTH : 1111 ALTIMETER (M) : 8.72 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4700 Conductivity ' ' 3531 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 4888 Conductivity:2 ' ' 4513 'Oxygen:SBE 43' ' ' 3791 Fluorometer:Seapoint ' ' 3641 Altimeter ' ' 76341 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG PAR/Irradiance:Biospherical/Licor ' ' 70613 Unavailable ' ' ' ' SPAR:Biospherical/Licor ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2023/04/17 14:27:53 3856 3856 CLEAN 5.3 2023/04/17 14:37:09 3856 3856 ADDSAMP 3.6 2023/04/17 15:22:45 3856 3856 BINAVE 4.2.1 2023/04/17 15:23:11 3856 16 MERGE 3.6 2023/04/19 16:33:06 16 16 CLEAN 5.3 2023/04/19 16:33:12 16 16 CALIB 12.1 2023/04/24 09:36:06 16 16 SORT 3.6 2023/04/24 13:11:46 16 16 REMOVECH 8.2 2023/04/24 13:12:23 16 16 CHGUNITS 3.2 2023/04/24 13:23:12 16 16 CHGUNITS 3.2 2023/04/24 13:23:51 16 16 REORDER 1.3.1 2023/04/24 13:24:55 ? ? HDREDIT2 3.2 2023/04/24 13:26:44 ? ? $END $REMARKS -CLEAN functions: 2023/04/17 14:37:05 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2022-068\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2023/04/19 16:33:06 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Sample_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : D:\Telework\2022-068\Processing\hydro\2022-068-0025.samavg Secondary file: D:\Telework\2022-068\Processing\hydro\2022-068-0025.mrgcln1s 16 secondary records matched to primary records. Comments from secondary file: D:\Telework\2022-068\Processing\hydro\2022-068-0025.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2023/04/18 13:41:56 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2023/04/19 16:33:11 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2023/04/24 09:36:06 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-068\Processing\doc\2022-068-rcal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Oxygen:Dissolved:SBE mL/L 10 -0.4200000E-01 0.1018700E+01 -SORT parameters: 2023/04/24 13:11:46 Sorted in ascending order of channel Pressure -REMOVECH 2023/04/24 13:12:23 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] PAR:Reference [uE/m^2/sec] Salinity:T0:C0 [PSS-78] Status:Pump Descent_Rate [m/s] Altimeter [metres] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2023/04/24 13:26:44 Applied edit header: D:\Telework\2022-068\Processing\doc\HYDRO\2022-068-bot-hdr.txt Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F8.3 ==> F6.1 Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 15: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 $END *COMMENTS Comments from secondary file: D:\Telework\2022-068\Processing\hydro\2022-068-0025.mrgcln1s ------------------------------------------------------------ Comments from secondary file: D:\Telework\2022-068\Processing\hydro\2022-068-0025.oxy ------------------------------------------------------- Sample_Number 115: OXY: Stair-step shaped titration curve. Endpoint ambiguous. Value discarded as a result. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 11 weeks after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For details on methodology, see document QF2022-068_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2022-068OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 54 - 60 days after collection. For details including a duplicate analysis, see document QF2022-068SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2022-068nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Holmes, R.M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.J. (1999). A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci., 56: 1801-1808. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence:URU:Seapoint and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Conductivity, Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the SBE fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. The SBE DO sensor hysteresis setting may need to be adjusted slightly as data from below 1700db appeared to be slighty out of line. There are insuffient samples from those depths to be sure. CTD salinity below 1700m may be high by no more than 0.02mL/L. For details on the processing see the report: 2022-068_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.42E-01 1.0187) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- ---9---- --10-- --11- ----12--- -13- -14- --15- ---16--- 17 --18-- 19 --20-- ---21-- --22- 23 --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Trans Fluores Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: :T1:C1 : n: ity: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~i ~u Secondar vity vity: URU: Dissol Disso Secondary ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !ti mb y Green Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitrit ri ca ha !on er t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 16 16 2.4 2.3 17.9443 51.9 81.8 0.783 32.1661 5.63 245.8 4.251085 241 128 18.6 -99.0000 0 0.22 0 0.09 5.634 246.0 0 0.00 0 0.94 0 0.379 0 15 15 4.9 4.8 17.9460 51.9 81.8 0.774 32.1664 5.63 245.8 4.251383 241 127 18.7 -99.0000 0 0.24 0 0.08 5.632 245.9 0 0.00 0 0.94 0 0.377 0 14 14 10.3 10.2 17.9447 52.0 81.8 0.768 32.1662 5.63 245.9 4.251468 241 126 18.7 -99.0000 0 0.23 6 0.08 5.641 246.3 0 0.00 0 0.97 0 0.374 0 13 13 24.7 24.5 17.7702 51.6 81.1 0.950 32.1658 5.65 246.8 4.235762 241 125 18.4 -99.0000 0 0.31 0 0.10 5.668 247.4 0 0.00 6 0.92 6 0.376 6 12 12 50.0 49.6 11.1324 52.4 81.9 1.793 32.1947 6.70 291.9 3.635773 241 124 11.9 -99.0000 0 -99.00 0 -99.00 6.680 291.2 6 3.73 0 4.55 0 0.762 0 11 11 75.2 74.6 9.1977 57.3 92.2 0.510 32.2698 6.40 278.9 3.473573 241 123 10.0 -99.0000 0 -99.00 0 -99.00 6.406 279.2 0 7.13 0 6.46 0 0.953 0 10 10 99.6 98.7 8.0737 58.6 94.9 0.226 32.5765 5.72 249.1 3.405493 241 122 9.0 -99.0000 0 -99.00 0 -99.00 5.699 248.3 0 13.91 0 13.32 0 1.289 0 9 9 150.4 149.1 7.3746 59.0 95.6 0.126 33.5939 3.94 171.6 3.440700 241 121 8.4 -99.0000 0 -99.00 0 -99.00 3.948 171.8 0 25.11 0 32.71 0 1.863 0 8 8 200.2 198.4 6.6537 59.0 95.3 0.110 33.8239 3.41 148.2 3.399525 241 120 7.8 -99.0000 0 -99.00 0 -99.00 3.408 148.3 0 29.18 0 44.30 0 2.087 0 7 7 250.5 248.3 6.0880 59.1 95.6 0.110 33.8646 2.80 121.8 3.355010 241 119 7.4 -99.0000 0 -99.00 0 -99.00 2.811 122.3 0 32.67 6 53.74 6 2.336 6 6 6 299.6 296.9 5.6773 59.2 95.8 0.099 33.8961 2.28 99.1 3.323509 241 118 7.0 -99.0000 0 -99.00 0 -99.00 2.290 99.6 0 35.83 0 61.23 0 2.565 0 5 5 400.6 396.9 4.9674 59.5 96.4 0.098 33.9745 1.36 59.2 3.272053 241 117 6.6 -99.0000 0 -99.00 0 -99.00 1.348 58.6 6 40.59 0 75.29 0 2.933 0 4 4 500.2 495.5 4.5866 59.7 96.7 0.086 34.0669 0.80 34.7 3.250845 241 116 6.2 -99.0000 0 -99.00 0 -99.00 0.819 35.6 0 42.88 0 92.23 0 3.118 0 3 3 750.5 742.9 3.9211 59.8 96.9 0.085 34.2493 0.28 12.3 3.218747 241 115 5.7 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 5 45.21 0 116.79 6 3.320 0 2 2 1000.7 990.0 3.2567 59.7 96.9 0.085 34.3826 0.26 11.4 3.182414 241 114 5.2 -99.0000 0 -99.00 0 -99.00 0.268 11.7 0 45.91 0 139.19 0 3.354 0 1 1 1120.2 1107.9 3.0431 59.7 96.9 0.085 34.4193 0.32 13.7 3.171858 241 113 5.4 34.4213 0 -99.00 0 -99.00 0.314 13.7 0 46.19 0 145.76 0 3.353 0