*2023/01/05 16:00:00.25 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2022/06/28 15:18:27.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 13 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 75DB4029 NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 13 2 Bottle:Firing_Sequence n/a 1 13 3 Pressure decibar 1.479 187.26 4 Depth metres 1.466 185.588 5 Temperature:Primary 'deg C (ITS90)' 8.3983 14.2501 6 Transmissivity %/metre 43.8 56.3 7 Fluorescence:URU:Seapoint mg/m^3 0.106 1.566 8 PAR uE/m^2/sec 0.785 1120.235 9 Salinity:T0:C0 PSS-78 26.4654 30.663 10 Oxygen:Dissolved:SBE mL/L 3.306 5.998 11 Oxygen:Dissolved:SBE umol/kg 144.2 262.7 12 Conductivity:Primary S/m 3.205607 3.280552 13 Number_of_bin_records n/a 241 241 14 Sample_Number n/a 258 270 15 Temperature:Draw 'deg C (ITS90)' 9 14.2 16 Salinity:Bottle PSS-78 30.6218 30.6218 17 Flag:Salinity:Bottle ' ' 18 Chlorophyll:Extracted mg/m^3 0.25 1.28 19 Flag:Chlorophyll:Extracted ' ' 20 Phaeo-Pigment:Extracted mg/m^3 0.6 0.86 21 Oxygen:Dissolved mL/L 3.382 6.026 22 Oxygen:Dissolved umol/kg 147.5464 262.1108 23 Flag:Oxygen:Dissolved ' ' 24 Nitrate_plus_Nitrite umol/L 6.1 31.18 25 Flag:Nitrate_plus_Nitrite ' ' 26 Silicate umol/L 29.9 65.92 27 Flag:Silicate ' ' 28 Phosphate umol/L 0.75 2.716 29 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 10 F ' ' 6 13 ' ' ' ' 5 I I 0 14 -99 ' ' 5 I I 0 15 -99 ' ' 6 F R4 1 16 -99 ' ' 9 F R4 4 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2022-040 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : O'Neill C. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 6 EVENT NUMBER : 80 LATITUDE : 49 30.60500 N ! (deg min) LONGITUDE : 124 27.76000 W ! (deg min) WATER DEPTH : 192 ALTIMETER (M) : 4.84 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 1222 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 5013 Conductivity ' ' 4434 'Pressure:Digiquartz with TC' ' ' 1222 Temperature:2 ' ' 5725 Conductivity:2 ' ' 4448 'Oxygen:SBE 43' ' ' 1438 Fluorometer:Seapoint ' ' 3685 Altimeter ' ' 73171 'LISST-200X:Sauter Mean Diameter' ' ' 2203 'Transmissometer:WET Labs C-Star' ' ' 983DR pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' 4565 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2022/12/19 14:43:56 3133 3133 CLEAN 5.3 2022/12/19 14:49:16 3133 3133 CTDEDIT 5.4.0 2022/12/19 15:04:39 3133 3133 MERGEHDR 1.3 2022/12/23 09:37:41 3133 3133 ADDSAMP 3.6 2022/12/23 09:38:26 3133 3133 BINAVE 4.2.1 2022/12/23 09:38:38 3133 13 MERGE 3.6 2022/12/23 09:39:04 13 13 CLEAN 5.3 2022/12/23 09:39:10 13 13 CALIB 12.1 2023/01/05 10:01:21 13 13 CALIB 12.1 2023/01/05 10:06:45 13 13 SORT 3.6 2023/01/05 10:45:27 13 13 REMOVECH 8.2 2023/01/05 10:46:10 13 13 CHGUNITS 3.2 2023/01/05 10:48:06 13 13 CHGUNITS 3.2 2023/01/05 11:02:52 13 13 REORDER 1.3.1 2023/01/05 15:59:13 ? ? HDREDIT2 3.2 2023/01/05 16:00:00 ? ? $END $REMARKS -CLEAN functions: 2022/12/19 14:49:07 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -CTDEDIT v5.4.0 2022/12/19 15:04:39 3133 changes in channel Salinity:T0:C0 -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2022-040\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2022/12/23 09:39:04 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : D:\Telework\2022-040\Processing\hydro\2022-040-0080.samavg Secondary file: D:\Telework\2022-040\Processing\hydro\2022-040-0080.mrgcln1s 13 secondary records matched to primary records. Comments from secondary file: D:\Telework\2022-040\Processing\hydro\2022-040-0080.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2022/12/20 14:48:15 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2022/12/23 09:39:09 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2023/01/05 10:01:21 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-040\Processing\doc\2022-040-recal-SIL.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 34 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Silicate -CALIB parameters: 2023/01/05 10:06:45 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-040\Processing\doc\2022-040-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1047500E+01 -SORT parameters: 2023/01/05 10:45:27 Sorted in ascending order of channel Pressure -REMOVECH 2023/01/05 10:46:10 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Salinity:T1:C1 [PSS-78] Status:Pump Descent_Rate [m/s] Altimeter [metres] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2023/01/05 16:00:00 Applied edit header: D:\Telework\2022-040\Processing\doc\HYDRO\2022-040-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 12: Conductivity:Primary [S/m] Format: F8.3 ==> F10.6 Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F8.3 ==> F6.1 Channel 15: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 $END *COMMENTS Remarks from CTDEDIT: CTDEDIT was used to clean a few points in channel Salinity:T0:C0 around 100db. Comments from secondary file: D:\Telework\2022-040\Processing\hydro\2022-040-0080.mrgcln1s ------------------------------------------------------------ Comments from secondary file: D:\Telework\2022-040\Processing\hydro\2022-040-0080.oxy ------------------------------------------------------- Sample_Number 258: OXY: Replicate outliers. Sample_Number 270: OXY: Draw temperature was missed during sample collection. Comments from secondary file: D:\Telework\2022-040\Processing\hydro\2022-040-0080.nut ------------------------------------------------------- Sample_Number 266: NUTS: Slight crack, moved to a new tube Sample_Number 269: NUTS: Sample intended as duplicate, however, only one sample processed Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 8 weeks after the cruise on a Turner Trilogy7200-000 fluorometer, using methods described in Holm-Hansen et al. (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For further details on methodolgy, see document QF 2022-040_CHL_*.xlsx. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2022-040_OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 14 - 20 days after collection. For details including a duplicate analysis, see document QF2022-040SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2022-040nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Holmes, R.M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.J. (1999). A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci., 56: 1801-1808. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Two CTDs were used during this cruise. CTD #0550 was used for Event #1 only. CTD #1222 was used for Events 4-91. Conductivity, Transmissivity, Fluorescence and PAR are nominal and unedited except that some records were removed in editing temperature and salinity. Recalibration of dissolved oxygen was based on a comparison with titrated samples for Events 4-91. For Event #1 recalibration was based on the performance of the oxygen sensor during previous cruises. Salinity required no recalibration. Pressure was recalibrated for Event #1. For all other events the pressure offset in the configuration file was adjusted based on results of previous cruises. For details on the processing see the report: 2022-040_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Silicate umol/L 120 -99 (Silicate) (0.904 0.3E-02 25) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0475) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- --8--- ---9---- --10-- --11- ----12--- -13- -14- --15- ---16--- 17 --18-- 19 --20-- ---21-- --22- 23 --24-- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Depth Temperat Trans Fluores PAR Salinity Oxygen Oxyge Conductiv Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: :T0:C0 : n: ity: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity URU: Dissol Disso Primary ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ------- ------ -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 13 13 1.5 1.5 14.2501 43.8 0.897 1120.2 26.4654 6.00 262.7 3.281000 241 270 -99.0 -99.0000 0 1.24 6 0.60 6.026 -99.0 2 6.10 6 29.90 6 0.750 6 12 12 5.5 5.5 13.7729 43.8 1.566 292.1 26.7194 5.96 261.0 3.272000 241 269 14.2 -99.0000 0 1.28 0 0.60 5.985 262.1 0 7.40 0 30.63 0 0.833 0 11 11 10.7 10.6 13.5148 45.2 1.483 66.1 26.8359 5.82 254.9 3.266000 241 268 13.5 -99.0000 0 1.21 0 0.66 5.709 250.0 0 10.11 0 33.49 0 1.012 0 10 10 20.2 20.0 10.4024 55.0 0.450 9.9 28.7831 4.46 195.0 3.227000 241 267 10.8 -99.0000 0 0.25 0 0.86 4.515 197.3 0 22.68 0 47.40 0 1.963 0 9 9 30.7 30.4 10.0512 54.7 0.320 2.4 29.0677 4.32 188.8 3.228000 241 266 10.4 -99.0000 0 -99.00 0 -99.00 4.327 189.0 0 24.19 2 49.59 2 2.104 2 8 8 40.7 40.4 9.7069 55.7 0.226 1.2 29.2753 4.14 180.9 3.221000 241 265 10.0 -99.0000 0 -99.00 0 -99.00 4.159 181.7 0 25.72 0 51.28 0 2.193 0 7 7 50.4 49.9 9.5540 55.6 0.168 0.9 29.4322 4.07 177.6 3.225000 241 264 9.9 -99.0000 0 -99.00 0 -99.00 4.094 178.8 0 26.02 0 51.33 0 2.272 0 6 6 75.7 75.0 8.7090 56.3 0.120 0.8 29.9299 3.95 172.3 3.206000 241 263 9.3 -99.0000 0 -99.00 0 -99.00 3.946 172.2 6 30.08 0 53.73 0 2.493 0 5 5 100.2 99.4 8.4712 55.6 0.110 0.8 30.1748 3.97 173.4 3.211000 241 262 9.1 -99.0000 0 -99.00 0 -99.00 3.982 173.8 0 30.81 0 53.77 0 2.489 0 4 4 125.3 124.2 8.4001 55.0 0.110 0.8 30.2815 3.93 171.7 3.216000 241 261 9.0 -99.0000 0 -99.00 0 -99.00 3.919 171.0 0 30.87 0 55.11 0 2.524 0 3 3 150.5 149.2 8.3983 54.6 0.106 0.8 30.4449 3.82 166.5 3.233000 241 260 9.0 -99.0000 0 -99.00 0 -99.00 3.841 167.6 0 30.72 0 57.11 0 2.554 0 2 2 175.7 174.1 8.5050 52.9 0.107 0.8 30.5862 3.52 153.5 3.256000 241 259 9.1 30.6218 0 -99.00 0 -99.00 3.428 149.6 0 30.95 0 64.34 0 2.716 0 1 1 187.3 185.6 8.5934 50.2 0.107 0.8 30.6630 3.31 144.2 3.271000 241 258 9.3 -99.0000 0 -99.00 0 -99.00 3.382 147.5 46 31.18 0 65.92 0 2.716 0