*2023/04/04 13:19:54.30 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2022/09/25 20:40:01.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 18 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 6831AF72 NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Position n/a 1 18 2 Bottle_Number n/a 1 18 3 Pressure decibar 0.671 362.799 4 Depth metres 0.665 359.292 5 Temperature:Primary 'deg C (ITS90)' 7.1039 13.4694 6 Transmissivity %/metre 39.1 61.9 7 Salinity:T0:C0 PSS-78 31.2908 33.2654 8 Oxygen:Dissolved:SBE mL/L 2.193 6.865 9 Oxygen:Dissolved:SBE umol/kg 95.5 299.6 10 Conductivity:Primary S/m 3.391822 3.745267 11 Number_of_bin_records n/a 40 241 12 Sample_Number n/a 39 56 13 Salinity:Bottle PSS-78 31.297 33.2565 14 Flag:Salinity:Bottle ' ' 15 Chlorophyll:Extracted mg/m^3 0.28 9.11 16 Flag:Chlorophyll:Extracted ' ' 17 Phaeo-Pigment:Extracted mg/m^3 0.28 1.1 18 Nitrate_plus_Nitrite umol/L 1.1 31.16 19 Flag:Nitrate_plus_Nitrite ' ' 20 Silicate umol/L 16.76 57.31 21 Flag:Silicate ' ' 22 Phosphate umol/L 0.582 2.447 23 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I ' ' 2 -99 ' ' 3 I I ' ' 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 -99 ' ' 10 F ' ' 6 11 -99 ' ' 5 I I 0 12 -99 ' ' 5 I I ' ' 13 -99 ' ' ' ' F9.4 R4 ' ' 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' ' ' F7.2 R4 ' ' 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' ' ' F7.2 R4 ' ' 18 -99 ' ' ' ' F7.2 R4 ' ' 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' ' ' F7.2 R4 ' ' 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' ' ' F8.3 R4 ' ' 23 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2022-025 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Sharing Science at Sea Leg 2 SCIENTIST : Page S. PLATFORM : Sir John Franklin *LOCATION GEOGRAPHIC AREA : Hecate Strait, Haida Gwaii STATION : JPS4 EVENT NUMBER : 25 LATITUDE : 52 31.10000 N ! (deg min) LONGITUDE : 131 23.63000 W ! (deg min) WATER DEPTH : 367 ALTIMETER (M) : 4.66 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0585 Temperature:2 ' ' 4484 Conductivity:2 ' ' 2128 'Oxygen:SBE 43' ' ' 1176 Fluorometer:Seapoint ' ' 2228 Altimeter ' ' 75321 'Transmissometer:WET Labs C-Star' ' ' 1201DR $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2023/03/27 11:29:27 3512 3512 CTDEDIT 5.4.0 2023/03/27 11:55:03 3512 3512 CLEAN 5.3 2023/03/27 12:34:49 3512 3512 ADDSAMP 3.6 2023/03/27 14:21:18 3512 3512 BINAVE 4.2.1 2023/03/27 14:23:43 3512 18 MERGE 3.6 2023/03/27 14:23:56 18 18 CLEAN 5.3 2023/03/29 10:32:17 18 18 CALIB 12.1 2023/04/04 11:38:22 18 18 SORT 3.6 2023/04/04 13:00:32 18 18 CHGUNITS 3.2 2023/04/04 13:10:57 18 18 CHGUNITS 3.2 2023/04/04 13:11:31 18 18 REORDER 1.3.1 2023/04/04 13:11:58 ? ? REMOVECH 8.2 2023/04/04 13:13:15 18 18 HDREDIT2 3.2 2023/04/04 13:19:54 ? ? $END $REMARKS -CTDEDIT v5.4.0 2023/03/27 11:55:03 13 changes in channel Salinity:T0:C0 4 changes in channel Salinity:T1:C1 -CLEAN functions: 2023/03/27 12:34:49 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2022-025\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2023/03/27 14:23:56 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Sample_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : D:\Telework\2022-025\Processing\hydro\2022-025-0025.samavg Secondary file: D:\Telework\2022-025\Processing\hydro\2022-025-0025.mrgcln1s 18 secondary records matched to primary records. Comments from secondary file: D:\Telework\2022-025\Processing\hydro\2022-025-0025.mrgcln1s ------------------------------------------------------------ -SORT parameters: 2023/03/27 13:55:52 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2023/03/29 10:32:17 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2023/04/04 11:38:22 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-025\Processing\doc\2022-025-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T0:C0 PSS-78 10 0.8000000E-02 0.1000000E+01 14 Salinity:T1:C1 PSS-78 10 0.2000000E-02 0.1000000E+01 15 Oxygen:Dissolved:SBE mL/L 10 0.2550000E-01 0.1093900E+01 -SORT parameters: 2023/04/04 13:00:32 Sorted in ascending order of channel Pressure -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 - No units changed -REMOVECH 2023/04/04 13:13:15 The following CHANNEL(S) were removed: Temperature:Secondary [deg C (ITS90)] Fluorescence:URU:Seapoint [mg/m^3] Salinity:T1:C1 [PSS-78] Conductivity:Secondary [S/m] Scan_Number Oxygen:Voltage:SBE [volts] Status:Pump Descent_Rate [m/s] Altimeter [metres] Flag -HEADER EDITS: 2023/04/04 13:19:54 Applied edit header: D:\Telework\2022-025\Processing\doc\HYDRO\2022-025-bot-hdr.txt Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F8.3 ==> F6.1 Channel 11: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 10: Conductivity:Primary [S/m] Format: F8.3 ==> F10.6 $END *COMMENTS Remarks from CTDEDIT: CTDEDIT was used to clean Salinity :T0:C0 around 1db and 100db and Salinity:T1:C1 around 250db. Comments from secondary file: D:\Telework\2022-025\Processing\hydro\2022-025-0025.mrgcln1s ------------------------------------------------------------ Comments from secondary file: D:\Telework\2022-025\Processing\hydro\2022-025-0025.sal ------------------------------------------------------- Sample_Number 49: SAL: Insert was not fully seated. Comments from secondary file: D:\Telework\2022-025\Processing\hydro\2022-025-0025.chl ------------------------------------------------------- Sample_Number 53: CHL: CV% >10 Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 10 weeks after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For details see worksheet “CV%” in file QF2022-025_CHL*.xlsx. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876, a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details, see document QF2022-025OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 70 - 79 days after collection. For details, see document QF2022-025SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Institute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2022-025nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity and Transmissivity are nominal and unedited except that some records were removed in editing temperature and salinity. Fluorescence was removed because the values found were extremely low and compared very badly with extracted chlorophyll samples. Channel Oxygen:Dissolved:SBE was recalibrated based on results of cruise 2022-067. For details on the processing see the report: 2022-025_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.8E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (0.2E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.255E-01 1.0939) $END !1- 2- --3--- --4--- ---5---- --6-- ---7---- --8--- --9-- ----10--- -11- -12- ---13--- 14 --15-- 16 --17-- --18-- 19 --20-- 21 ---22-- 23 !Bo Bo Pressu Depth Temperat Trans Salinity Oxygen Oxyge Conductiv Numb Samp Salinity Fl Chloro Fl Phaeo- Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi :T0:C0 : n: ity: er_o le_ :Bottle ag phyll: ag Pigmen e_ ag te ag te ag !~i ~u Primary vity Dissol Disso Primary ~bin Numb ~o Extrac ~a t: plus_ ~t ~i ~p !ti mb ved: lved: _rec er tt ted ct Extrac Nitrit ri ca ha !on er SBE SBE ords le ed ted e te te te !-- -- ------ ------ -------- ----- -------- ------ ----- --------- ---- ---- -------- -- ------ -- ------ ------ -- ------ -- ------- -- *END OF HEADER 16 16 0.7 0.7 13.4669 39.1 31.2908 6.86 299.6 3.745000 45 54 -99.0000 0 9.11 0 1.10 1.10 0 16.76 0 0.582 0 18 18 0.7 0.7 13.4694 39.1 31.2910 6.86 299.4 3.745000 241 56 -99.0000 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 17 17 0.7 0.7 13.4672 39.3 31.2910 6.86 299.2 3.745000 149 55 31.2970 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 15 15 4.7 4.7 13.2827 43.1 31.3156 6.63 289.2 3.732000 241 53 -99.0000 0 6.80 36 0.94 1.74 0 17.29 0 0.604 0 14 14 10.0 9.9 12.9739 52.0 31.3896 6.12 266.8 3.713000 241 52 -99.0000 0 3.26 0 0.65 3.93 0 19.36 0 0.774 0 13 13 20.6 20.4 12.3551 61.2 31.6108 5.45 237.8 3.682000 241 51 -99.0000 0 0.28 0 0.28 8.03 0 23.86 0 1.081 0 12 12 29.9 29.7 12.2078 61.7 31.6605 5.31 231.5 3.674000 241 50 -99.0000 0 -99.00 0 -99.00 11.73 0 27.05 0 1.293 0 11 11 50.5 50.1 11.0828 61.9 31.8976 4.12 179.8 3.600000 241 49 31.9258 3 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 10 10 50.5 50.1 11.0574 61.9 31.9040 4.11 179.3 3.599000 103 48 -99.0000 0 -99.00 0 -99.00 18.84 6 34.62 6 1.696 6 9 9 75.1 74.4 8.3567 59.2 32.6939 2.67 116.1 3.440000 241 47 -99.0000 0 -99.00 0 -99.00 26.63 0 48.94 0 2.219 0 8 8 100.3 99.4 7.7255 57.7 32.9285 2.30 100.3 3.407000 241 46 -99.0000 0 -99.00 0 -99.00 29.22 0 54.18 0 2.367 0 7 7 150.5 149.1 7.3357 55.5 33.1094 2.28 99.4 3.392000 241 45 -99.0000 0 -99.00 0 -99.00 30.62 6 56.54 6 2.417 6 6 6 200.0 198.2 7.3032 55.6 33.1309 2.29 99.5 3.393000 241 44 -99.0000 0 -99.00 0 -99.00 30.34 0 56.38 0 2.391 0 5 5 250.0 247.6 7.2357 55.0 33.1734 2.28 99.1 3.393000 241 43 -99.0000 0 -99.00 0 -99.00 30.59 0 56.32 0 2.379 0 4 4 301.1 298.3 7.2229 54.4 33.1820 2.27 98.8 3.395000 241 42 -99.0000 0 -99.00 0 -99.00 30.71 0 56.37 0 2.406 0 2 2 362.7 359.2 7.1040 41.6 33.2652 2.19 95.5 3.395000 42 40 33.2565 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 1 1 362.8 359.3 7.1039 41.9 33.2654 2.19 95.5 3.395000 40 39 -99.0000 0 -99.00 0 -99.00 -99.00 0 -99.00 0 -99.000 0 3 3 362.8 359.3 7.1039 41.6 33.2653 2.19 95.5 3.395000 241 41 -99.0000 0 -99.00 0 -99.00 31.16 0 57.31 0 2.447 0