*2022/12/09 08:56:27.10 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2022/08/26 10:46:47.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : A1937F79 NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 11 2 Bottle:Firing_Sequence n/a 1 11 3 Pressure decibar 4.983 183.057 4 Depth metres 4.941 181.436 5 Temperature:Secondary 'deg C (ITS90)' 7.1124 11.2351 6 Transmissivity %/metre 33.8 53.8 7 Transmissivity:Green %/metre 50.7 86.8 8 Fluorescence:URU:Seapoint mg/m^3 0.122 4.771 9 PAR uE/m^2/sec 0 0.5E-01 10 Salinity:T1:C1 PSS-78 30.849 33.8745 11 Oxygen:Dissolved:SBE mL/L 1.323 5.321 12 Oxygen:Dissolved:SBE umol/kg 57.6 232.2 13 Conductivity:Secondary S/m 3.434466 3.506708 14 Sample_Number n/a 14 24 15 Number_of_bin_records n/a 61 241 16 Temperature:Draw 'deg C (ITS90)' 7.9 11.4 17 Chlorophyll:Extracted mg/m^3 0.57 14.17 18 Flag:Chlorophyll:Extracted ' ' 19 Phaeo-Pigment:Extracted mg/m^3 0.61 2.85 20 Oxygen:Dissolved mL/L 1.328 5.277 21 Oxygen:Dissolved umol/kg 57.78273 230.2637 22 Flag:Oxygen:Dissolved ' ' 23 Nitrate_plus_Nitrite umol/L 18.67 36.67 24 Flag:Nitrate_plus_Nitrite ' ' 25 Silicate umol/L 38.4 57.14 26 Flag:Silicate ' ' 27 Phosphate umol/L 1.644 2.764 28 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 -99 ' ' 10 F ' ' 6 14 -99 ' ' 5 I I 0 15 ' ' ' ' 5 I I 0 16 -99 ' ' 6 F R4 1 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 8 F R4 3 28 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2022-022 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Nelson J. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : JF2 EVENT NUMBER : 7 LATITUDE : 48 17.82000 N ! (deg min) LONGITUDE : 124 0.13000 W ! (deg min) WATER DEPTH : 185 ALTIMETER (M) : 4.27 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4700 Conductivity ' ' 3531 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 4888 Conductivity:2 ' ' 4513 'Oxygen:SBE 43' ' ' 3791 Fluorometer:Seapoint ' ' 3641 Altimeter ' ' 76341 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG PAR/Irradiance:Biospherical/Licor ' ' 70613 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2022/10/18 15:57:59 2471 2471 CLEAN 5.3 2022/10/18 15:59:47 2471 2471 ADDSAMP 3.6 2022/10/18 16:44:28 2471 2471 BINAVE 4.2.1 2022/10/18 16:44:59 2471 11 MERGE 3.6 2022/12/08 09:55:48 11 11 CLEAN 5.3 2022/12/08 09:55:53 11 11 CALIB 12.1 2022/12/08 13:45:50 11 11 CALIB 12.1 2022/12/08 13:58:55 11 11 SORT 3.6 2022/12/08 15:28:09 11 11 REMOVECH 8.2 2022/12/09 08:49:45 11 11 CHGUNITS 3.2 2022/12/09 08:51:53 11 11 CHGUNITS 3.2 2022/12/09 08:52:00 11 11 REORDER 1.3.1 2022/12/09 08:52:14 ? ? HDREDIT2 3.2 2022/12/09 08:56:27 ? ? $END $REMARKS -CLEAN functions: 2022/10/18 15:59:46 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2022-022\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2022/12/08 09:55:48 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : D:\Telework\2022-022\Processing\hydro\2022-022-0007.samavg Secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0007.mrgcln1s 11 secondary records matched to primary records. Comments from secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0007.mrgcln1s ------------------------------------------------------------ -CLEAN functions: 2022/12/08 09:55:04 20 Reduce header to sections: FIL ADM LOC DEP REC INS HIS RAW CAL COM Remarks removed from kept sections. -SORT parameters: 2022/12/08 09:55:08 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2022/12/08 09:55:53 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2022/12/08 13:45:50 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-022\Processing\doc\2022-022-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 -0.6300000E-02 0.1016400E+01 -CALIB parameters: 2022/12/08 13:58:55 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-022\Processing\doc\2022-022-recal2.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 32 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T1:C1 -SORT parameters: 2022/12/08 15:28:09 Sorted in ascending order of channel Pressure -REMOVECH 2022/12/09 08:49:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Salinity:T0:C0 [PSS-78] Status:Pump Descent_Rate [m/s] Altimeter [metres] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2022/12/09 08:56:27 Applied edit header: D:\Telework\2022-022\Processing\doc\HYDRO\2022-022-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F8.3 ==> F6.1 Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 16: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 $END *COMMENTS Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 11 weeks after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For details on methodology, see document QF2022-022_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2022-022OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 6 - 17 days after collection. For details including a duplicate analysis, see document QF2022-022SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2022-022nuts*.xlsx. The ammonium method used at IOS is a simplification of the fluorometric technique of Holmes et al, 1999. This method applies to a wide range of ammonium concentrations, uses the addition of a single working reagent and reduces contamination. Typically, samples are collected during the day and stored in the cold room. The working reagent is added to standards and samples at the same time, and the fluorescence is read approximately 8 hours later using a Trilogy Fluorometer in Raw Fluorescence Mode. Standards are made in LNSW collected at P22 400m. For full details including a precision study see file QF2022-022NH4*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Holmes, R.M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.J. (1999). A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci., 56: 1801-1808. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence:URU:Seapoint and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Channel Salinity:T1:C1 was found to be very close to bottle samples. The SBE DO sensor hysteresis setting and calibration appeared to change suddenly between casts #128 and #133. This might be related to problems encountered in the previous cast at the same site as #133. The change was small and principally affected low oxygen values. The later casts were reconverted with different hysteresis parameters. Separate recalibration schemes were applied to the 2 groups of casts. For details on the processing see the report: 2021-022_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.63E-02 1.0164) Silicate umol/L 120 -99 (Salinity:T1:C1) (0.904 0.3E-02 25) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- --9--- ---10--- --11-- --12- ----13--- -14- -15- --16- --17-- 18 --19-- ---20-- --21- 22 --23-- 24 --25-- 26 ---27-- 28 !Bo Bo Pressu Depth Temperat Trans Trans Fluores PAR Salinity Oxygen Oxyge Conductiv Samp Numb Tempe Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: :T1:C1 : n: ity: le_ er_o ratur phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Secondar vity vity: URU: Dissol Disso Secondary Numb ~bin e: Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en y Green Seapoin ved: lved: er _rec Draw ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- ------ -------- ------ ----- --------- ---- ---- ----- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 11 11 5.0 4.9 11.2136 33.8 51.8 4.353 0.1 30.8490 5.31 231.8 3.503792 24 241 -99.0 13.57 0 2.45 -99.000 -99.0 0 18.70 0 38.88 0 1.710 0 10 10 5.0 4.9 11.2143 34.1 51.0 4.771 0.0 30.8492 5.31 231.9 3.503865 23 61 11.4 -99.00 0 -99.00 5.265 229.7 6 -99.00 0 -99.00 0 -99.000 0 9 9 10.1 10.1 11.2351 33.8 50.7 4.183 0.0 30.8575 5.32 232.2 3.506708 22 241 11.4 14.17 0 2.85 5.277 230.3 0 18.67 0 38.40 0 1.644 0 8 8 20.1 19.9 10.8922 39.5 59.9 2.918 0.0 30.8982 4.66 203.3 3.481909 21 241 11.1 8.17 0 1.80 4.675 204.0 0 20.89 0 40.91 0 1.791 0 7 7 30.0 29.8 10.1905 45.5 71.1 1.670 0.0 31.5728 3.81 166.2 3.489728 20 241 10.5 5.44 6 2.03 4.018 175.2 0 23.07 0 41.75 0 1.997 0 6 6 50.2 49.8 8.8513 52.1 82.8 0.225 0.0 32.4497 2.74 119.2 3.459479 19 241 9.3 0.57 0 0.61 2.765 120.5 0 28.97 6 47.24 6 2.364 6 5 5 60.2 59.7 8.5845 52.3 83.1 0.187 0.0 32.6707 2.67 116.5 3.457577 18 241 9.1 -99.00 0 -99.00 2.670 116.3 0 30.08 0 46.25 0 2.371 0 4 4 80.6 79.9 7.7161 52.4 84.0 0.159 0.0 33.4549 2.01 87.4 3.455249 17 241 8.4 -99.00 0 -99.00 2.035 88.6 6 32.31 0 48.78 0 2.536 0 3 3 100.0 99.1 7.2319 53.8 86.8 0.122 0.0 33.6890 1.77 77.2 3.434466 16 241 8.0 -99.00 0 -99.00 1.766 76.9 0 35.47 0 51.18 0 2.631 0 2 2 150.1 148.8 7.1124 47.4 75.6 0.122 0.0 33.8722 1.33 57.9 3.442758 15 241 7.9 -99.00 0 -99.00 1.340 58.3 0 36.67 0 56.66 0 2.764 0 1 1 183.1 181.4 7.1153 46.9 72.6 0.122 0.0 33.8745 1.32 57.6 3.444696 14 241 7.9 -99.00 0 -99.00 1.328 57.8 0 36.14 6 57.14 6 2.708 6