*2022/12/09 08:56:27.06 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2022/08/26 04:31:10.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 12 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 14B8F84B NUMBER OF CHANNELS : 30 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 12 2 Bottle:Firing_Sequence n/a 1 12 3 Pressure decibar 2.114 225.92 4 Depth metres 2.097 223.89 5 Temperature:Secondary 'deg C (ITS90)' 8.6563 11.822 6 Transmissivity %/metre 27.4 41.1 7 Transmissivity:Green %/metre 39.5 61 8 Fluorescence:URU:Seapoint mg/m^3 0.436 2.679 9 PAR uE/m^2/sec 0 0.334 10 Salinity:T1:C1 PSS-78 29.3491 32.5133 11 Oxygen:Dissolved:SBE mL/L 2.411 4.643 12 Oxygen:Dissolved:SBE umol/kg 105 202.8 13 Conductivity:Secondary S/m 3.399669 3.455983 14 Sample_Number n/a 2 13 15 Number_of_bin_records n/a 241 241 16 Temperature:Draw 'deg C (ITS90)' 9.3 12.1 17 Salinity:Bottle PSS-78 29.4368 29.4368 18 Flag:Salinity:Bottle ' ' 19 Chlorophyll:Extracted mg/m^3 4.04 6.71 20 Flag:Chlorophyll:Extracted ' ' 21 Phaeo-Pigment:Extracted mg/m^3 1 1.61 22 Oxygen:Dissolved mL/L 2.448 4.62 23 Oxygen:Dissolved umol/kg 106.6482 201.8507 24 Flag:Oxygen:Dissolved ' ' 25 Nitrate_plus_Nitrite umol/L 18.17 30.98 26 Flag:Nitrate_plus_Nitrite ' ' 27 Silicate umol/L 39.98 50.55 28 Flag:Silicate ' ' 29 Phosphate umol/L 1.717 2.471 30 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 -99 ' ' 10 F ' ' 6 14 -99 ' ' 5 I I 0 15 ' ' ' ' 5 I I 0 16 -99 ' ' 6 F R4 1 17 -99 ' ' 9 F R4 4 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 7 F R4 2 22 -99 ' ' 8 F R4 3 23 -99 ' ' 6 F ' ' 1 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 0 ' ' 3 NQ C ' ' 29 -99 ' ' 8 F R4 3 30 0 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2022-022 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Nelson J. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : Haro59 EVENT NUMBER : 6 LATITUDE : 48 36.81000 N ! (deg min) LONGITUDE : 123 14.79000 W ! (deg min) WATER DEPTH : 234 ALTIMETER (M) : 8.79 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4700 Conductivity ' ' 3531 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 4888 Conductivity:2 ' ' 4513 'Oxygen:SBE 43' ' ' 3791 Fluorometer:Seapoint ' ' 3641 Altimeter ' ' 76341 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG PAR/Irradiance:Biospherical/Licor ' ' 70613 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2022/10/18 15:57:59 2892 2892 CLEAN 5.3 2022/10/18 15:59:46 2892 2892 ADDSAMP 3.6 2022/10/18 16:44:27 2892 2892 BINAVE 4.2.1 2022/10/18 16:44:59 2892 12 MERGE 3.6 2022/12/08 09:55:48 12 12 CLEAN 5.3 2022/12/08 09:55:53 12 12 CALIB 12.1 2022/12/08 13:45:50 12 12 CALIB 12.1 2022/12/08 13:58:55 12 12 SORT 3.6 2022/12/08 15:28:09 12 12 REMOVECH 8.2 2022/12/09 08:49:45 12 12 CHGUNITS 3.2 2022/12/09 08:51:53 12 12 CHGUNITS 3.2 2022/12/09 08:52:00 12 12 REORDER 1.3.1 2022/12/09 08:52:14 ? ? HDREDIT2 3.2 2022/12/09 08:56:27 ? ? $END $REMARKS -CLEAN functions: 2022/10/18 15:59:46 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2022-022\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2022/12/08 09:55:48 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolved, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total, Ammonium, Flag:Ammonium Primary file : D:\Telework\2022-022\Processing\hydro\2022-022-0006.samavg Secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0006.mrgcln1s 12 secondary records matched to primary records. Comments from secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0006.mrgcln1s ------------------------------------------------------------ -CLEAN functions: 2022/12/08 09:55:04 20 Reduce header to sections: FIL ADM LOC DEP REC INS HIS RAW CAL COM Remarks removed from kept sections. -SORT parameters: 2022/12/08 09:55:08 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2022/12/08 09:55:53 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2022/12/08 13:45:50 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-022\Processing\doc\2022-022-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 -0.6300000E-02 0.1016400E+01 -CALIB parameters: 2022/12/08 13:58:55 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2022-022\Processing\doc\2022-022-recal2.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 34 Silicate umol/L 120 0.9040000E+00 0.3000000E-02 0.2500000E+02 Salinity:T1:C1 -SORT parameters: 2022/12/08 15:28:09 Sorted in ascending order of channel Pressure -REMOVECH 2022/12/09 08:49:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Salinity:T0:C0 [PSS-78] Status:Pump Descent_Rate [m/s] Altimeter [metres] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2022/12/09 08:56:27 Applied edit header: D:\Telework\2022-022\Processing\doc\HYDRO\2022-022-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 6: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F8.3 ==> F6.1 Channel 7: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 16: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 $END *COMMENTS Comments from secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0006.mrgcln1s ------------------------------------------------------------ Comments from secondary file: D:\Telework\2022-022\Processing\hydro\2022-022-0006.chl ------------------------------------------------------- Sample_Number 11: CHL: filtered volume uncertain due to small (~1mL) spill. Sample_Number 12: CHL: CV%> 10 Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters after collection, and immediately frozen and stored in a -80C freezer until analysis. All samples were returned to the Institute of Ocean Sciences and analyzed 11 weeks after the cruise on a Turner Trilogy 7200-000 fluorometer, using methods described in Holm-Hansen et al (1965). Fluorescence readings taken before and after sample acidification were used to calculate chlorophyll and phaeopigment concentrations. For details on methodology, see document QF2022-022_CHL*.xlsx Methodology sheet. NOTE: Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeo-Pigment values. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a precision analysis, see document QF2022-022OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 6 - 17 days after collection. For details including a duplicate analysis, see document QF2022-022SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2022-022nuts*.xlsx. The ammonium method used at IOS is a simplification of the fluorometric technique of Holmes et al, 1999. This method applies to a wide range of ammonium concentrations, uses the addition of a single working reagent and reduces contamination. Typically, samples are collected during the day and stored in the cold room. The working reagent is added to standards and samples at the same time, and the fluorescence is read approximately 8 hours later using a Trilogy Fluorometer in Raw Fluorescence Mode. Standards are made in LNSW collected at P22 400m. For full details including a precision study see file QF2022-022NH4*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Holmes, R.M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.J. (1999). A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci., 56: 1801-1808. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence:URU:Seapoint and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Channel Salinity:T1:C1 was found to be very close to bottle samples. The SBE DO sensor hysteresis setting and calibration appeared to change suddenly between casts #128 and #133. This might be related to problems encountered in the previous cast at the same site as #133. The change was small and principally affected low oxygen values. The later casts were reconverted with different hysteresis parameters. Separate recalibration schemes were applied to the 2 groups of casts. For details on the processing see the report: 2021-022_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.63E-02 1.0164) Silicate umol/L 120 -99 (Salinity:T1:C1) (0.904 0.3E-02 25) $END !1- 2- --3--- --4--- ---5---- --6-- --7-- ---8--- --9--- ---10--- --11-- --12- ----13--- -14- -15- --16- ---17--- 18 --19-- 20 --21-- ---22-- --23- 24 --25-- 26 --27-- 28 ---29-- 30 !Bo Bo Pressu Depth Temperat Trans Trans Fluores PAR Salinity Oxygen Oxyge Conductiv Samp Numb Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi missi cence: :T1:C1 : n: ity: le_ er_o ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag !~u ~u Secondar vity vity: URU: Dissol Disso Secondary Numb ~bin e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en y Green Seapoin ved: lved: er _rec Draw tt ted ct Extrac lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed ted ed e te te te !-- -- ------ ------ -------- ----- ----- ------- ------ -------- ------ ----- --------- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 12 12 2.1 2.1 11.8220 38.0 55.7 2.679 0.3 29.3491 4.64 202.8 3.399669 13 241 12.1 -99.0000 0 6.71 0 1.40 4.620 201.9 0 18.17 0 39.98 0 1.717 0 11 11 5.1 5.0 11.6709 38.5 56.1 2.356 0.0 29.4956 4.50 196.7 3.402593 12 241 11.9 29.4368 0 6.43 36 1.54 4.509 197.0 6 19.01 0 42.13 0 1.759 0 10 10 10.2 10.1 11.4468 39.3 58.5 2.231 0.0 29.6970 4.33 189.1 3.405138 11 241 11.6 -99.0000 0 5.49 3 1.61 4.308 188.2 0 19.79 0 42.66 0 1.816 0 9 9 20.1 19.9 11.1208 40.5 59.8 1.791 0.0 30.0284 4.07 177.9 3.412513 10 241 11.3 -99.0000 0 5.56 0 1.00 4.080 178.1 0 20.66 6 43.72 6 1.871 6 8 8 30.4 30.1 11.0636 39.8 58.8 1.812 0.0 30.0634 4.02 175.6 3.411725 9 241 11.3 -99.0000 0 4.04 0 1.18 4.018 175.4 0 21.49 0 43.78 0 1.920 0 7 7 40.4 40.0 10.5516 40.9 61.0 1.229 0.0 30.5514 3.65 159.1 3.418692 8 241 10.8 -99.0000 0 -99.00 0 -99.00 3.661 159.8 6 23.41 0 45.02 0 2.027 0 6 6 50.5 50.1 10.5389 41.0 60.3 1.370 0.0 30.5699 3.63 158.6 3.419901 7 241 10.3 -99.0000 0 -99.00 0 -99.00 3.637 158.7 0 23.35 6 45.58 6 2.062 6 5 5 75.1 74.4 10.4734 41.1 60.9 1.288 0.0 30.6623 3.60 157.2 3.424671 6 241 10.7 -99.0000 0 -99.00 0 -99.00 3.563 155.5 0 24.13 0 45.37 0 2.087 0 4 4 100.9 100.0 9.5107 39.1 58.4 0.740 0.0 31.6408 2.97 129.7 3.440602 5 241 9.9 -99.0000 0 -99.00 0 -99.00 2.969 129.4 0 27.50 0 47.50 0 2.245 0 3 3 149.9 148.6 9.0524 40.1 60.5 0.628 0.0 32.1088 2.68 116.7 3.448472 4 241 9.5 -99.0000 0 -99.00 0 -99.00 2.680 116.8 0 29.25 0 48.71 0 2.384 0 2 2 200.5 198.7 8.7540 33.1 48.4 0.452 0.0 32.4149 2.47 107.8 3.454037 3 241 9.4 -99.0000 0 -99.00 0 -99.00 2.541 110.7 0 30.12 0 49.33 0 2.403 0 1 1 225.9 223.9 8.6563 27.4 39.5 0.436 0.0 32.5133 2.41 105.0 3.455983 2 241 9.3 -99.0000 0 -99.00 0 -99.00 2.448 106.6 0 30.98 0 50.55 0 2.471 0