*2023/04/03 14:26:05.88 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2021/10/08 00:36:24.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 14 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 9CC5900B NUMBER OF CHANNELS : 56 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 110 123 2 Bottle:Firing_Sequence n/a 1 14 3 Bottle_Number n/a 1 14 4 Pressure decibar 1.9 202.6 5 Depth metres 2.7 201.5 6 Temperature:Secondary 'deg C (ITS90)' 9.6734 10.4225 7 Conductivity:Secondary S/m 3.348008 3.466814 8 Transmissivity %/metre 44.6 49.2 9 Transmissivity:Green %/metre 66.5 73.6 10 Fluorescence:URU:Seapoint mg/m^3 0.276 0.474 11 PAR uE/m^2/sec 0.3 76.3 12 Salinity:T1:C1 PSS-78 29.9729 31.7222 13 Oxygen:Dissolved:SBE mL/L 3.1 3.74 14 Oxygen:Dissolved:SBE umol/kg 135.3 163.3 15 Number_of_bin_records n/a 241 241 16 Temperature:Draw 'deg C (ITS90)' 9.7 10.3 17 Salinity:Bottle PSS-78 31.7163 31.7163 18 Flag:Salinity:Bottle ' ' 19 Chlorophyll:Extracted mg/m^3 0.77 0.86 20 Flag:Chlorophyll:Extracted ' ' 21 Phaeo-Pigment:Extracted mg/m^3 0.3 0.35 22 Oxygen:Dissolved mL/L 3.057 3.735 23 Oxygen:Dissolved umol/kg 135.5 165.5 24 Flag:Oxygen:Dissolved ' ' 25 Nitrate_plus_Nitrite umol/L 26.93 28.83 26 Flag:Nitrate_plus_Nitrite ' ' 27 Silicate umol/L 46.06 47.48 28 Flag:Silicate ' ' 29 Phosphate umol/L 1.635 2.062 30 Flag:Phosphate ' ' 31 HPLC:Chl-c3 mg/m^3 0.7E-02 0.7E-02 32 HPLC:Chlide-a mg/m^3 0.5E-02 0.5E-02 33 HPLC:MgDVP mg/m^3 0.1E-01 0.1E-01 34 HPLC:Chl-c2 mg/m^3 0.81E-01 0.81E-01 35 HPLC:Chl-c1 mg/m^3 0.21E-01 0.21E-01 36 HPLC:Me-chlide mg/m^3 0 0 37 HPLC:Peri mg/m^3 0.1E-01 0.1E-01 38 HPLC:But-fuco mg/m^3 0.5E-02 0.5E-02 39 HPLC:Fuco mg/m^3 0.229 0.229 40 HPLC:Neo mg/m^3 0.13E-01 0.13E-01 41 HPLC:Pras mg/m^3 0.13E-01 0.13E-01 42 HPLC:Viola mg/m^3 0.12E-01 0.12E-01 43 HPLC:Hex-fuco mg/m^3 0.3E-02 0.3E-02 44 HPLC:Diadino mg/m^3 0.19E-01 0.19E-01 45 HPLC:Allo mg/m^3 0.54E-01 0.54E-01 46 HPLC:Diato mg/m^3 0 0 47 HPLC:Zea mg/m^3 0.21E-01 0.21E-01 48 HPLC:Lut mg/m^3 0.1E-01 0.1E-01 49 HPLC:Gyr-de mg/m^3 0 0 50 HPLC:Chl-b mg/m^3 0.83E-01 0.83E-01 51 HPLC:c2-MGDG mg/m^3 0.2E-02 0.2E-02 52 HPLC:DVChl-a mg/m^3 0 0 53 HPLC:Chl-a mg/m^3 0.787 0.787 54 HPLC:B-Car mg/m^3 0.22E-01 0.22E-01 55 HPLC:TChl-a mg/m^3 0.793 0.793 56 Flag:HPLC n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 10 F ' ' 6 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 6 F ' ' 1 10 -99 ' ' 8 F ' ' 3 11 -99 ' ' 7 F ' ' 1 12 -99 ' ' 9 F ' ' 4 13 -99 ' ' 7 F ' ' 2 14 -99 ' ' 6 F ' ' 1 15 -99 ' ' 5 I I 0 16 -99 ' ' 6 F R4 1 17 -99 ' ' 9 F R4 4 18 -99 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 3 NQ C ' ' 21 -99 ' ' 7 F R4 2 22 -99 ' ' 8 F R4 3 23 -99 ' ' 6 F ' ' 1 24 -99 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 -99 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 -99 ' ' 3 NQ C ' ' 29 -99 ' ' 8 F R4 3 30 -99 ' ' 3 NQ C ' ' 31 -99 ' ' 8 F R4 3 32 -99 ' ' 8 F R4 3 33 -99 ' ' 8 F R4 3 34 -99 ' ' 8 F R4 3 35 -99 ' ' 8 F R4 3 36 -99 ' ' 8 F R4 3 37 -99 ' ' 8 F R4 3 38 -99 ' ' 8 F R4 3 39 -99 ' ' 8 F R4 3 40 -99 ' ' 8 F R4 3 41 -99 ' ' 8 F R4 3 42 -99 ' ' 8 F R4 3 43 -99 ' ' 8 F R4 3 44 -99 ' ' 8 F R4 3 45 -99 ' ' 8 F R4 3 46 -99 ' ' 8 F R4 3 47 -99 ' ' 8 F R4 3 48 -99 ' ' 8 F R4 3 49 -99 ' ' 8 F R4 3 50 -99 ' ' 8 F R4 3 51 -99 ' ' 8 F R4 3 52 -99 ' ' 8 F R4 3 53 -99 ' ' 8 F R4 3 54 -99 ' ' 8 F R4 3 55 -99 ' ' 8 F R4 3 56 -99 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2021-022 AGENCY : IOS, Ocean Science Division, Sidney, B.C. COUNTRY : Canada PROJECT : Salish Sea Biophysical Survey SCIENTIST : Chandler P. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 56 EVENT NUMBER : 42 LATITUDE : 48 46.40000 N ! (deg min) LONGITUDE : 123 1.63000 W ! (deg min) WATER DEPTH : 206 ALTIMETER (M) : 5.32 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4700 Conductivity ' ' 3531 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 4888 Conductivity:2 ' ' 4513 'Oxygen:SBE 43' ' ' 3791 Fluorometer:Seapoint ' ' 3950 Altimeter ' ' 76341 'Transmissometer:WET Labs C-Star' ' ' 1185DR 'Transmissometer:WET Labs C-Star:2' ' ' 1883DG pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' 4565 Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS Software Version Seasave V 7.26.7.121 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.3 2022/02/04 13:48:56 3374 3374 CLEAN 5.3 2022/02/04 13:51:09 3374 3374 ADDSAMP 3.6 2022/02/04 14:26:43 3374 3374 BINAVE 4.2.1 2022/02/04 14:27:07 3374 14 MERGE 3.6 2022/02/08 12:49:11 14 14 CLEAN 5.3 2022/02/11 11:11:24 14 14 CALIB 12.0.1 2022/02/11 11:11:33 14 14 SORT 3.6 2022/02/11 15:08:55 14 14 REMOVECH 8.2 2022/02/11 15:10:45 14 14 CHGUNITS 3.2 2022/02/11 15:13:14 14 14 CHGUNITS 3.2 2022/02/11 15:13:44 14 14 REORDER 1.3.1 2022/02/11 16:13:51 ? ? HDREDIT2 3.2 2022/02/11 16:13:56 ? ? SORT 3.6 2023/03/23 14:46:33 14 14 MERGE 3.6 2023/03/28 13:57:12 14 14 SORT 3.6 2023/03/28 13:57:23 14 14 CLEAN 5.3 2023/03/28 13:57:32 14 14 HDREDIT2 3.2 2023/03/28 14:00:35 ? ? HDREDIT2 3.2 2023/03/28 14:01:46 ? ? CLEAN 5.3 2023/04/03 14:26:05 14 14 $END $REMARKS -CLEAN functions: 2022/02/04 13:51:02 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Telework\2021-022\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2022/02/08 12:49:11 Merge Channel: Bottle_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : D:\Telework\2021-022\Processing\hydro\2021-022-0042.samavg Secondary file: D:\Telework\2021-022\Processing\hydro\2021-022-0042.mrgcln1s 14 secondary records matched to primary records. -SORT parameters: 2022/02/07 14:11:08 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2022/02/11 11:11:23 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove remark heading: "Comments from secondary" -CALIB parameters: 2022/02/11 11:11:33 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = D:\Telework\2021-022\Processing\doc\2021-022-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Pressure decibar 10 -0.8000000E+00 0.1000000E+01 22 Oxygen:Dissolved:SBE mL/L 10 0.1200000E-02 0.1046500E+01 -SORT parameters: 2022/02/11 15:08:55 Sorted in ascending order of channel Pressure -REMOVECH 2022/02/11 15:10:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] PAR:Reference [uE/m^2/sec] pH:SBE [pH Units] Status:Pump Altimeter [metres] Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Temperature:Draw 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2022/02/11 16:13:56 Applied edit header: D:\Telework\2021-022\Processing\doc\HYDRO\2021-022-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F9.4 ==> F7.1 Channel 7: Transmissivity [%/metre] Name: Transmissivity:1 ==> Transmissivity Format: F9.4 ==> F6.1 Channel 8: Transmissivity:Green [%/metre] Name: Transmissivity:2 ==> Transmissivity:Green Channel 16: Temperature:Draw [deg C (ITS90)] Format: F7.2 ==> F6.1 -SORT parameters: 2023/03/23 14:46:33 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2023/03/28 13:57:12 Merge Channel: Sample_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: HPLC:Chl-c3, HPLC:Chlide-a, HPLC:MgDVP, HPLC:Chl-c2, HPLC:Chl-c1, HPLC:Me-chlide, HPLC:Peri, HPLC:Pheide-a, HPLC:But-fuco, HPLC:Fuco, HPLC:Neo, HPLC:Pras, HPLC:Viola, HPLC:Hex-fuco, HPLC:Diadino, HPLC:Allo, HPLC:Diato, HPLC:Zea, HPLC:Lut, HPLC:Gyr-de, HPLC:Chl-b, HPLC:c2-MGDG, HPLC:DVChl-a, HPLC:Phe, HPLC:Chl-a, HPLC:B-Car, HPLC:TChl-a, Flag:HPLC Primary file : C:\HPLC\2021-022\Processing\IOS\2021-022-0042.che1 Secondary file: C:\HPLC\2021-022\Processing\IOS\2021-022-0042.hplc 1 secondary records matched to primary records. -SORT parameters: 2023/03/28 13:57:23 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2023/03/28 13:57:32 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in Channel: Oxygen:Dissolved:SBE [mL/L] Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2023/03/28 14:00:35 Applied edit header: C:\HPLC\2021-022\2021-022-hdr1.txt -HEADER EDITS: 2023/03/28 14:01:46 Applied edit header: C:\HPLC\2021-022\2021-022-hdr2.txt Channel 31: HPLC:Chl-c3 [mg/m^3] Units: ==> mg/m^3 Channel 32: HPLC:Chlide-a [mg/m^3] Units: ==> mg/m^3 Channel 33: HPLC:MgDVP [mg/m^3] Units: ==> mg/m^3 Channel 34: HPLC:Chl-c2 [mg/m^3] Units: ==> mg/m^3 Channel 35: HPLC:Chl-c1 [mg/m^3] Units: ==> mg/m^3 Channel 36: HPLC:Me-chlide [mg/m^3] Units: ==> mg/m^3 Channel 37: HPLC:Peri [mg/m^3] Units: ==> mg/m^3 Channel 38: HPLC:But-fuco [mg/m^3] Units: ==> mg/m^3 Channel 39: HPLC:Fuco [mg/m^3] Units: ==> mg/m^3 Channel 40: HPLC:Neo [mg/m^3] Units: ==> mg/m^3 Channel 41: HPLC:Pras [mg/m^3] Units: ==> mg/m^3 Channel 42: HPLC:Viola [mg/m^3] Units: ==> mg/m^3 Channel 43: HPLC:Hex-fuco [mg/m^3] Units: ==> mg/m^3 Channel 44: HPLC:Diadino [mg/m^3] Units: ==> mg/m^3 Channel 45: HPLC:Allo [mg/m^3] Units: ==> mg/m^3 Channel 46: HPLC:Diato [mg/m^3] Units: ==> mg/m^3 Channel 47: HPLC:Zea [mg/m^3] Units: ==> mg/m^3 Channel 48: HPLC:Lut [mg/m^3] Units: ==> mg/m^3 Channel 50: HPLC:Chl-b [mg/m^3] Units: ==> mg/m^3 Channel 52: HPLC:DVChl-a [mg/m^3] Units: ==> mg/m^3 Channel 53: HPLC:Chl-a [mg/m^3] Units: ==> mg/m^3 Channel 54: HPLC:B-Car [mg/m^3] Units: ==> mg/m^3 Channel 55: HPLC:TChl-a [mg/m^3] Units: ==> mg/m^3 Channel 51: HPLC:c2-MGDG [mg/m^3] Units: ==> mg/m^3 Channel 49: HPLC:Gyr-de [mg/m^3] Units: ==> mg/m^3 -CLEAN functions: 2023/04/03 14:26:05 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Change character data from " " to "0" in channels Flag:* $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD data\2021-022\2021-022-0042.hdr Software Version Seasave V 7.26.7.121 Temperature SN = 4700 Conductivity SN = 3531 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 08 2021 00:36:24 NMEA Latitude = 48 46.40 N NMEA Longitude = 123 01.63 W NMEA UTC (Time) = Oct 08 2021 00:16:57 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 0 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Tully: 2021-022 Station: 56 Depth: 213 System UTC = Oct 08 2021 00:36:24 # nquan = 23 # nvalues = 3374 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = depSM: Depth [salt water, m] # name 5 = t090C: Temperature [ITS-90, deg C] # name 6 = t190C: Temperature, 2 [ITS-90, deg C] # name 7 = c0S/m: Conductivity [S/m] # name 8 = c1S/m: Conductivity, 2 [S/m] # name 9 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 10 = CStarTr1: Beam Transmission, WET Labs C-Star, 2 [%] # name 11 = flSP: Fluorescence, Seapoint # name 12 = sbeox0V: Oxygen raw, SBE 43 [V] # name 13 = par: PAR/Irradiance, Biospherical/Licor # name 14 = spar: SPAR/Surface Irradiance # name 15 = ph: pH # name 16 = pumps: Pump Status # name 17 = altM: Altimeter [m] # name 18 = dz/dtM: Descent Rate [m/s] # name 19 = sal00: Salinity, Practical [PSU] # name 20 = sal11: Salinity, Practical, 2 [PSU] # name 21 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 22 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Oct 08 2021 00:36:24 [System UTC, header] # bad_flag = -9.990e-29 # # # # # 4700 # 12-Dec-20 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34744496e-003 # 6.38231870e-004 # 2.10953096e-005 # 1.79186371e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 06-Jan-21 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00921127e+001 # 1.54474443e+000 # -2.54963711e-003 # 2.95252222e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0443 # 07-Jan-21 # -4.435292e+004 # -1.635794e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993627e+001 # -3.271008e-004 # 3.759160e-006 # 1.565300e-009 # 0.99989502 # -0.38836 # 0.000000e+000 # 1.282462e-002 # -8.599824e+000 # # # # # # 4888 # 12-Dec-20 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.32604412e-003 # 6.34365670e-004 # 2.18217362e-005 # 2.02364598e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 4513 # 18-Dec-20 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00676289e+001 # 1.38093586e+000 # -1.32984366e-003 # 1.69158499e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 3791 # 22-Dec-20 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.1609e-001 # -0.7169 # -4.3461e-003 # 1.7263e-004 # -3.0839e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3950 # # # 2 # 0.000 # # # # # # 76341 # 2021-02-10 # 15.000 # 0.000 # # # # # # # # # 1185DR # 2021-04-28 # 19.7050 # -1.0828 # 0.250 # # # # # # 1883DG # 2021-04-28 # 20.5546 # -0.0502 # 0.250 # # # # # # 0691 # 23-Feb-21 # 4.6068 # 2.5090 # # # # # # 4565 # 2021-02-24 # 1.00000000 # 0.00000000 # 3802281368.82000020 # 1.00000000 # -0.03962000 # # # # # # # # # 20518 # 20210224 # 1.00000000 # 1504.23400000 # # # # datcnv_date = Feb 04 2022 13:47:21, 7.23.2 # datcnv_in = D:\Telework\2021-022\Unprocessed\ctd\2021-022-0042.hex D:\Telework \2021-022\Processing\doc\2021-022-ctd.xmlcon # datcnv_ox_hysteresis_correction = no # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 7-8 weeks after the cruise. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Chlorophyll values ranged from 0.17-25.84ug/l in 112 samples. Average %CV for this cruise was 3.43% with 1 out of 28 duplicate pairs having a CV>10% and 0 duplicate pairs having a CV>30%. Our average dataset %CV is 3.83% for 2013 - 2020 so the overall quality of this dataset is good. For details see worksheet “CV%” in file QF2021-022_CHL*.xlsx. HPLC samples were filtered onto 47mm GF/F filters and stored at -80C prior to analysis Samples were extracted in 95% methanol at -20C for 24 hours in the lab and analyzed on a WATERS 2695 HPLC separations system as detailed in Nemcek and Peña, 2014. Analysis was performed ~8-10 months after collection The average of two samples is reported. Variability is assessed as the %CV (std dev/mean*100) for du All pigments below the limit of detection (LOD) are assigned a zero value. TChl-a is the sum of Chl-a, DVchl-a, Chlide-a and Me-chlide For further information see file QF 2021-022HPLC*.xlsx. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2021-022OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater within 7 weeks of collection. For details including a duplicate analysis, see document QF2021-022SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2021-022nuts*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Holmes, R.M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.J. (1999). A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci., 56: 1801-1808. 6. Nemcek, N. and Peña, M.A. 2014. Institute of Ocean Sciences Protocols for Phytoplankton Pigment Analysis by HPLC. Can. Tech. Rep. Fish. Aquat. Sci. 3117: x + 80 p. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence:URU:Seapoint, PAR and pH:SBE data are nominal and unedited except that some records were removed in editing temperature and salinity. The Reference PAR sensor produced no useful data. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. Channel Salinity:T1:C1 was found to be lower than bottles by approximately 0.003psu, but delayed analysis and incomplete flushing of Niskin bottles is likely to result in bottle values being higher than ambient salinity values by roughly 0.005psu, so the CTD salinity was likely high by roughly 0.002psu. During use in the previous cruise the secondary salinity was considered to be low by about 0.0005psu. No recalibration was applied due to the uncertainty in the comparisons. Salinity is likely within 0.002psu. For details on the processing see the report: 2021-022_Processing_Report.doc. --------------------------------------------------------------------------------- Comments from secondary file: C:\HPLC\2021-022\Processing\IOS\2021-022-0042.hplc -------------------------------------------------- Sample_Number 123: HPLC: >10%CV for TChl-a *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure decibar 10 -99 () (-0.8 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.12E-02 1.0465) $END !-1-- 2- 3- --4--- --5--- ---6---- ----7---- --8-- --9-- ---10-- --11-- ---12--- --13-- --14- -15- --16- ---17--- 18 --19-- 20 --21-- ---22-- --23- 24 --25-- 26 --27-- 28 ---29-- 30 ---31-- ---32-- ---33-- ---34-- ---35-- ---36-- ---37-- ---38-- ---39-- ---40-- ---41-- ---42-- ---43-- ---44-- ---45-- ---46-- ---47-- ---48-- ---49-- ---50-- ---51-- ---52-- ---53-- ---54-- ---55-- 56 !Samp Bo Bo Pressu Depth Temperat Conductiv Trans Trans Fluores PAR Salinity Oxygen Oxyge Numb Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC:B- HPLC: Fl !le_ tt tt re ure: ity: missi missi cence: :T1:C1 : n: er_o ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag e_ ag te ag te ag Chl-c3 Chlide- MgDVP Chl-c2 Chl-c1 Me- Peri But- Fuco Neo Pras Viola Hex- Diadino Allo Diato Zea Lut Gyr-de Chl-b c2-MGDG DVChl-a Chl-a Car TChl-a ag !Numb ~u ~u Secondar Secondary vity vity: URU: Dissol Disso ~bin e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p a chlide fuco fuco : !er en mb y Green Seapoin ved: lved: _rec Draw tt ted ct Extrac lved lv Nitrit ri ca ha HP ! ce er t SBE SBE ords le ed ted ed e te te te LC !---- -- -- ------ ------ -------- --------- ----- ----- ------- ------ -------- ------ ----- ---- ----- -------- -- ------ -- ------ ------- ----- -- ------ -- ------ -- ------- -- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- -- *END OF HEADER 123 14 14 1.9 2.7 10.4225 3.348008 48.8 71.8 0.474 76.3 29.9729 3.74 163.3 241 10.3 -99.0000 0 0.86 0 0.30 3.735 165.5 6 26.93 0 47.24 0 1.825 0 0.007 0.005 0.010 0.081 0.021 0.000 0.010 0.005 0.229 0.013 0.013 0.012 0.003 0.019 0.054 0.000 0.021 0.010 0.000 0.083 0.002 0.000 0.787 0.022 0.793 36 122 13 13 4.4 5.2 10.4048 3.350803 48.5 71.7 0.471 46.2 30.0142 3.69 161.3 241 10.3 -99.0000 0 0.86 0 0.35 3.679 163.1 0 26.93 0 47.30 0 1.866 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 121 12 12 9.1 9.8 10.3741 3.351328 48.7 71.9 0.462 19.1 30.0429 3.68 160.6 241 10.3 -99.0000 0 0.83 6 0.35 3.632 161.0 0 26.94 6 47.06 6 1.635 6 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 120 11 11 19.3 19.9 10.3226 3.357190 48.8 72.4 0.415 3.7 30.1397 3.63 158.4 241 10.3 -99.0000 0 0.77 0 0.32 3.598 159.5 0 26.94 6 47.48 6 1.854 6 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 119 10 10 29.5 30.0 10.2450 3.368439 49.1 72.6 0.370 1.0 30.3122 3.55 154.8 241 10.1 -99.0000 0 -99.00 0 -99.00 3.489 154.7 6 27.48 0 46.48 0 2.062 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 118 9 9 39.5 39.9 10.1438 3.388009 49.0 73.1 0.330 0.5 30.5886 3.48 151.7 241 10.1 -99.0000 0 -99.00 0 -99.00 3.454 153.1 0 27.46 0 46.51 0 1.873 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 117 8 8 49.5 49.8 10.1167 3.393505 49.2 73.1 0.336 0.4 30.6624 3.46 150.9 241 10.1 -99.0000 0 -99.00 0 -99.00 3.445 152.7 0 27.55 0 46.69 0 1.917 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 116 7 7 74.4 74.5 10.0793 3.399818 49.2 73.4 0.326 0.3 30.7471 3.42 149.1 241 10.1 -99.0000 0 -99.00 0 -99.00 3.414 151.3 0 27.73 0 47.13 0 1.877 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 115 6 6 99.5 99.4 9.9572 3.417359 49.2 73.6 0.313 0.3 31.0172 3.32 144.7 241 9.9 -99.0000 0 -99.00 0 -99.00 3.299 146.2 0 27.99 0 46.39 0 1.833 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 114 5 5 124.8 124.5 9.8917 3.428014 49.2 73.5 0.301 0.3 31.1703 3.26 142.2 241 9.9 -99.0000 0 -99.00 0 -99.00 3.250 144.1 0 28.14 0 47.21 0 1.647 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 113 4 4 149.9 149.4 9.7538 3.453590 47.3 70.5 0.290 0.3 31.5382 3.17 138.3 241 9.7 -99.0000 0 -99.00 0 -99.00 3.156 139.9 0 28.44 0 46.35 0 1.820 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 112 3 3 175.0 174.3 9.7104 3.460702 46.4 69.0 0.285 0.3 31.6378 3.13 136.7 241 9.7 -99.0000 0 -99.00 0 -99.00 3.109 137.8 0 28.61 0 46.27 0 1.975 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 111 2 2 198.7 197.7 9.6734 3.466804 44.6 66.5 0.276 0.3 31.7222 3.10 135.3 241 9.7 31.7163 0 -99.00 0 -99.00 3.080 136.6 0 28.67 0 46.06 0 1.657 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 110 1 1 202.6 201.5 9.6745 3.466814 44.8 66.7 0.279 0.3 31.7197 3.10 135.3 241 9.7 -99.0000 0 -99.00 0 -99.00 3.057 135.5 0 28.83 0 46.28 0 1.716 0 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0