*2020/05/12 16:31:09.03 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2019/09/24 21:18:08.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 88 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 2611A1D1 NUMBER OF CHANNELS : 10 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 0.442 86.763 2 Depth metres 0.439 86.009 3 Temperature:Primary 'deg C (ITS90)' 10.142 15.459 4 Fluorescence:URU:Wetlabs mg/m^3 0.355 2.261 5 pH:SBE:Nominal n/a 8.12 8.595 6 Salinity:T0:C0 PSS-78 22.6791 30.1629 7 Oxygen:Dissolved:SBE mL/L 2.883 5.396 8 Oxygen:Dissolved:SBE umol/kg 125.7955 236.3528 9 Conductivity:Primary S/m 2.93325 3.390619 10 Number_of_bin_records n/a 6 22 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 10 F ' ' 6 10 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: D:\Telework\2019-053\Processing\derive\2019-053-0206.cnv $END *ADMINISTRATION MISSION : 2019-053 AGENCY : PBS, Ecosystem Science Division, Nanaimo, B.C. COUNTRY : Canada PROJECT : Strait of Georgia Juvenile Salmon SCIENTIST : Neville C. PLATFORM : Sea Crest *LOCATION GEOGRAPHIC AREA : Strait of Georgia & Juan de Fuca Strait STATION : 117 EVENT NUMBER : 206 LATITUDE : 48 57.72900 N ! (deg min) LONGITUDE : 123 27.77600 W ! (deg min) WATER DEPTH : 103 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-25 SERIAL NUMBER : 0404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0464 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS Software Version 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.3 2020/05/04 10:56:02 2277 2277 CLEAN 5.2.4 2020/05/06 13:40:51 2277 2277 CLEAN 5.2.4 2020/05/06 13:41:27 2277 2277 MERGEHDR 1.3 2020/05/06 13:45:14 2277 2277 ADTIMCH 4.4 2020/05/06 13:45:25 2277 2277 SHIFTDAT 3.5 2020/05/06 16:40:10 2277 2277 SHIFTDAT 3.5 2020/05/06 16:41:30 2277 2277 DELETE 6.3 2020/05/06 16:52:07 2277 712 CTDEDIT 5.3.0 2020/05/11 09:21:33 712 712 FILTERS 4.3 2020/05/11 14:17:27 712 712 BINAVE 4.2.1 2020/05/11 14:17:41 712 88 REMOVECH 8.2 2020/05/11 14:25:55 88 88 CHGUNITS 3.1.2 2020/05/11 14:26:24 88 88 REORDER 1.3.1 2020/05/11 14:56:53 ? ? HDREDIT2 3.2 2020/05/12 16:31:09 ? ? $END $REMARKS -CLEAN functions: 2020/05/06 13:40:37 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Fluorescence:URU:Wetlabs:ECO-AFL [mg/m^3] where channel Fluorescence:URU:Wetlabs:ECO-AFL [mg/m^3] is in the range -100 20766 data records in pad range. Set event to last 4 characters of file name Set header Start and End times from the data. -CLEAN functions: 2020/05/06 13:41:21 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Oxygen:Dissolved:SBE [mL/L] where channel Oxygen:Dissolved:SBE [mL/L] is in the range -100 to 0 19826 data records in pad range. Set event to last 4 characters of file name Set header Start and End times from the data. -The following ADTIMCH parameters were used. Add 9.00 hours to times in header file section -The following SHIFT parameters were used. Shift Channel: pH:SBE [pH Units] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 10.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 3.50 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 5 points) will be deleted. Drop rate applies in the range 10.00 to 76.86 dbars Sample interval (from FILE section of header) = 0.125 seconds. -CTDEDIT v5.3.0 2020/05/11 09:21:33 17 changes in channel Salinity:T0:C0 -The following FILTER parameters were used. Median filter was used. Filter width = 5 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2020/05/11 14:25:55 The following CHANNEL(S) were removed: Scan_Number Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary [deg C (ITS90)] Salinity reference channel: Salinity:T0:C0 [PSS-78] 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2020/05/12 16:31:09 Applied edit header: D:\Telework\2019-053\Processing\doc\2019-053-HDR.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Format: F10.3 ==> F7.1 Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F6.1 ==> F7.1 Channel 4: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 6: Salinity:T0:C0 [PSS-78] Format: F9.4 ==> F8.3 Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 5: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Users\WP-SBE25\Documents\2019-053SG3\2019-053-0206.hex Software Version 1.59 Temperature SN = 2449 Conductivity SN = 1764 System UpLoad Time = Sep 28 2019 08:08:51 2019-053 SOG Juvenile Salmon 2019-03 ds SBE 25 CTD V 4.1c SN 0404 09/28/19 06:57:01.075 external pressure sensor, range = 1500 psia, tcval = -264 xtal = 9437232 clk = 32767.920 vmain = 12.0 iop = 209 vlith = 5.0 ncasts = 14 samples = 42394 free = 602579 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 0 09/24 12:18:08 smpls 0 to 2276 nv = 3 avg = 1 stp = switch of S> # nquan = 12 # nvalues = 2277 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = depSM: Depth [salt water, m], lat = 49.00 # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = ph: pH # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = sal00: Salinity, Practical [PSU] # name 10 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 11 = flag: flag # span 0 = 1, 2277 # span 1 = -0.614, 86.863 # span 2 = -0.609, 86.108 # span 3 = 10.1415, 16.3334 # span 4 = 0.193688, 3.391020 # span 5 = -0.3120, 63.5610 # span 6 = 0.0000, 2.1050 # span 7 = 6.650, 8.612 # span 8 = -1.399, 1.285 # span 9 = 1.2639, 30.2326 # span 10 = -1.9997, 18.8852 # span 11 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Sep 24 2019 12:18:08 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2449 # 08-Nov-18 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35527618e-003 # 6.43650857e-004 # 2.34451878e-005 # 2.23705883e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 21-Nov-18 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.01051468e+000 # 4.70680668e-001 # -6.31036338e-004 # 5.40822703e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0464 # 26-Nov-18 # 7.975067e+002 # -2.072574e-001 # 2.434063e-007 # 0.00000 # # # # # # 0852 # 13-Dec-18 # 4.6274 # 2.5213 # # # # # # 1176 # 03-Nov-18 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.5600e-001 # -0.5211 # -4.7293e-003 # 1.7496e-004 # -2.7508e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.9800 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 07-Mar-2017 # 1.30000000e+001 # # 0.0240 # # # # datcnv_date = Apr 28 2020 14:52:59, 7.23.2 [datcnv_vars = 9] # datcnv_in = D:\Telework\2019-053\Unprocessed\CTD Data\2019-053-0206.hex D:\Tel ework\2019-053\Processing\doc\2019-053-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = May 04 2020 08:27:19, 7.23.2 # wfilter_in = D:\Telework\2019-053\Processing\convert\2019-053-0206.cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 9 # wfilter_action depSM = cosine, 9 # wfilter_action t090C = cosine, 9 # wfilter_action c0S/m = cosine, 9 # alignctd_date = May 04 2020 08:28:33, 7.23.2 # alignctd_in = D:\Telework\2019-053\Processing\WFILTER\2019-053-0206.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = May 04 2020 08:30:45, 7.23.2 # celltm_in = D:\Telework\2019-053\Processing\align\2019-053-0206.cnv # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = May 04 2020 10:55:20, 7.23.2 [derive_vars = 2] # Derive_in = D:\Telework\2019-053\Processing\celltm\2019-053-0206.cnv D:\Telewo rk\2019-053\Processing\doc\2019-053-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: There were problems in the conductivity channel so salinity data often look bad. It is frequently difficult to tell good salinity from bad. CTDEDIT was used to clean salinity. -------------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Conductivity, Fluorescence:URU:Wetlabs and pH:SBE data are nominal and unedited except that some records were removed in editing temperature and salinity. The CTD was soaked at the surface for between 1 minute and 2.7 minutes. There was no salinity or dissolved oxygen calibration sampling from this cruise. This was the second use of the sensors since they were last serviced at the factory so calibration drift is likely low. There are concerns about the reliability of the salinity data so they are only reported with 3 decimal places. The problems with salinity are somewhat random unstable excursions that derive from the conductivity channel and are likely due to variations in the alignment with temperature data. This may be due to variable flow rates possibly due to a pump/plumbing problem. The temperature data look fine. Dissolved oxygen values are likely to be high around 10 to 20m as bubbles are released as there was no initial 10m soak. While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see document: 2019-053_Processing_Report.doc. !--1--- --2--- ---3---- ---4--- ---5--- ---6--- --7--- --8-- ----9---- -10- !Pressu Depth Temperat Fluores pH:SBE: Salinit Oxygen Oxyge Conductiv Numb !re ure: cence: Nominal y:T0:C0 : n: ity: er_o ! Primary URU: Dissol Disso Primary ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ ------ -------- ------- ------- ------- ------ ----- --------- ---- *END OF HEADER 0.4 0.4 15.4590 1.085 8.595 22.679 4.85 212.9 2.933250 6 0.9 0.9 14.6478 1.096 8.543 23.885 5.36 235.1 3.015674 22 2.0 2.0 13.9702 1.166 8.503 25.945 5.40 236.4 3.201135 14 3.0 3.0 13.8488 1.234 8.489 26.368 5.19 227.4 3.239066 10 4.0 3.9 13.5659 1.358 8.455 26.975 4.98 217.9 3.284493 10 5.0 4.9 13.1726 1.644 8.417 27.633 4.78 208.9 3.325753 10 6.0 5.9 12.8390 2.261 8.378 28.119 4.58 200.2 3.351796 9 7.0 6.9 12.6048 2.115 8.362 28.472 4.47 195.6 3.371019 10 8.0 8.0 12.4762 2.103 8.345 28.636 4.39 191.7 3.378136 8 9.0 8.9 12.3848 2.154 8.334 28.751 4.28 186.9 3.382986 8 10.0 9.9 12.2996 2.019 8.322 28.858 4.17 182.1 3.387382 8 11.0 10.9 12.1631 1.882 8.299 28.962 4.08 178.1 3.387391 8 12.0 11.9 12.0010 1.758 8.287 29.107 4.01 175.2 3.389367 8 13.0 12.9 11.9394 1.485 8.277 29.166 3.98 173.8 3.390619 9 14.0 13.8 11.8133 1.344 8.265 29.230 3.95 172.3 3.387030 9 15.0 14.9 11.7246 1.343 8.258 29.303 3.88 169.3 3.387348 8 16.0 15.9 11.6502 1.295 8.248 29.343 3.85 168.1 3.385416 8 17.0 16.8 11.5327 1.259 8.239 29.372 3.86 168.6 3.378881 8 18.0 17.8 11.4970 1.251 8.242 29.403 3.83 167.5 3.379143 9 19.0 18.9 11.5475 1.153 8.243 29.410 3.77 164.7 3.384101 8 20.0 19.8 11.5542 1.110 8.241 29.429 3.72 162.6 3.386621 9 21.0 20.8 11.4835 1.150 8.234 29.457 3.70 161.7 3.383786 8 22.0 21.8 11.4108 1.046 8.234 29.511 3.69 160.9 3.383430 8 23.0 22.8 11.3998 0.944 8.234 29.538 3.66 159.7 3.385330 9 24.0 23.8 11.4005 0.882 8.233 29.550 3.65 159.1 3.386668 9 25.0 24.8 11.3964 0.815 8.234 29.553 3.63 158.3 3.386693 8 26.0 25.8 11.3739 0.799 8.230 29.569 3.60 157.3 3.386512 9 27.1 26.8 11.3440 0.799 8.229 29.587 3.58 156.3 3.385913 8 28.1 27.8 11.3317 0.789 8.226 29.590 3.54 154.7 3.385232 8 29.0 28.8 11.3105 0.728 8.221 29.596 3.49 152.3 3.384140 8 30.0 29.7 11.1699 0.753 8.202 29.622 3.44 150.0 3.375314 8 31.0 30.7 10.9464 0.758 8.186 29.662 3.39 147.9 3.360979 9 32.0 31.8 10.8598 0.712 8.180 29.689 3.35 146.4 3.356599 8 33.0 32.7 10.8419 0.642 8.178 29.692 3.32 145.1 3.355504 9 34.0 33.7 10.7968 0.597 8.172 29.704 3.29 143.7 3.352960 8 35.0 34.7 10.7441 0.597 8.170 29.727 3.28 143.4 3.351015 8 36.0 35.7 10.7110 0.557 8.169 29.734 3.28 143.3 3.349057 8 37.0 36.7 10.7025 0.543 8.168 29.726 3.27 142.9 3.347617 7 38.0 37.7 10.6943 0.529 8.166 29.724 3.26 142.2 3.346577 7 39.0 38.7 10.6485 0.529 8.162 29.747 3.24 141.6 3.345307 7 40.0 39.6 10.5868 0.529 8.159 29.782 3.23 140.9 3.343798 7 41.0 40.6 10.5650 0.505 8.159 29.786 3.21 140.3 3.342470 8 42.0 41.6 10.5425 0.476 8.156 29.793 3.20 139.8 3.341365 6 43.0 42.6 10.5201 0.466 8.155 29.803 3.19 139.3 3.340594 8 44.0 43.7 10.5037 0.452 8.155 29.810 3.18 138.6 3.339918 7 45.0 44.6 10.4819 0.434 8.154 29.819 3.17 138.2 3.339059 7 46.0 45.6 10.4592 0.436 8.149 29.827 3.15 137.6 3.338105 7 47.0 46.6 10.4186 0.450 8.146 29.842 3.13 136.8 3.336310 7 48.0 47.5 10.3616 0.434 8.145 29.873 3.12 136.3 3.334716 7 49.0 48.6 10.3216 0.408 8.142 29.899 3.13 136.4 3.334121 8 50.0 49.6 10.3139 0.402 8.142 29.905 3.13 136.6 3.334044 7 51.0 50.5 10.3087 0.402 8.141 29.906 3.13 136.5 3.333747 8 52.0 51.6 10.2990 0.402 8.120 29.916 3.12 136.0 3.334077 7 53.0 52.5 10.3007 0.395 8.124 29.934 3.11 135.9 3.336024 7 54.0 53.5 10.3015 0.386 8.126 29.941 3.11 135.6 3.336812 6 55.0 54.5 10.2708 0.386 8.127 29.951 3.10 135.4 3.335341 7 56.0 55.6 10.2466 0.402 8.131 29.960 3.10 135.3 3.334320 7 57.0 56.5 10.2432 0.389 8.132 29.962 3.10 135.4 3.334269 6 57.9 57.4 10.2394 0.386 8.131 29.965 3.10 135.4 3.334289 7 58.9 58.4 10.2361 0.386 8.132 29.966 3.10 135.1 3.334130 7 60.0 59.4 10.2357 0.391 8.130 29.965 3.09 134.9 3.334084 7 61.0 60.4 10.2321 0.397 8.130 29.962 3.10 135.2 3.333503 7 62.0 61.5 10.2189 0.370 8.130 29.960 3.10 135.2 3.332247 7 63.0 62.5 10.2127 0.370 8.131 29.964 3.10 135.3 3.332165 7 64.0 63.5 10.2192 0.370 8.130 29.968 3.10 135.1 3.333086 7 65.0 64.4 10.2232 0.370 8.130 29.971 3.09 134.8 3.333824 7 66.0 65.4 10.2210 0.379 8.128 29.972 3.09 134.8 3.333798 7 67.0 66.4 10.1949 0.379 8.127 29.977 3.09 134.7 3.332150 7 68.0 67.4 10.1771 0.370 8.127 29.982 3.08 134.5 3.331254 8 69.0 68.4 10.1690 0.370 8.128 29.989 3.08 134.4 3.331293 7 70.0 69.4 10.1579 0.370 8.127 29.994 3.08 134.6 3.330902 7 71.0 70.4 10.1531 0.370 8.126 29.997 3.09 134.7 3.330825 8 72.0 71.4 10.1441 0.355 8.127 30.004 3.09 134.9 3.330880 8 73.0 72.4 10.1420 0.355 8.127 30.012 3.10 135.4 3.331501 8 74.0 73.3 10.1573 0.355 8.130 30.030 3.10 135.2 3.334655 7 75.0 74.3 10.2324 0.355 8.132 30.046 3.08 134.3 3.342511 8 76.0 75.4 10.2827 0.368 8.135 30.057 3.07 133.9 3.347822 9 77.0 76.4 10.2830 0.386 8.135 30.065 3.06 133.4 3.348692 8 78.0 77.3 10.2783 0.370 8.135 30.073 3.05 133.2 3.349152 8 79.0 78.3 10.2737 0.374 8.136 30.097 3.06 133.3 3.351214 9 80.0 79.3 10.2772 0.398 8.136 30.114 3.05 132.9 3.353294 8 81.0 80.3 10.2779 0.372 8.135 30.119 3.03 132.4 3.353814 8 82.0 81.3 10.2809 0.382 8.136 30.125 3.03 132.3 3.354731 9 83.0 82.3 10.2867 0.370 8.136 30.137 3.03 132.3 3.356455 8 84.1 83.3 10.2860 0.372 8.136 30.148 3.03 132.3 3.357580 8 85.0 84.3 10.2867 0.384 8.147 30.157 3.03 132.0 3.358536 8 86.0 85.3 10.2872 0.372 8.141 30.160 2.98 130.2 3.358931 8 86.8 86.0 10.2874 0.381 8.138 30.163 2.88 125.8 3.359295 10