*2024/09/05 09:54:14.79 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2019/02/08 15:15:51.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : BFE7A7D8 NUMBER OF CHANNELS : 61 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ------------------------------------------ --------------- -------------- -------------- 1 Sample_Number n/a 150 166 2 Bottle_Number n/a 1 17 3 Bottle:Firing_Sequence n/a 1 17 4 Pressure decibar 4.1 300.7 5 Depth metres 4 297.9 6 Temperature:Primary 'deg C (ITS90)' 5.8863 8.5697 7 Transmissivity %/metre 59.2 63.9 8 Fluorescence:URU:Seapoint mg/m^3 0.39E-01 0.727 9 PAR uE/m^2/sec 0 1 10 Salinity:T0:C0 PSS-78 32.4236 33.9577 11 Oxygen:Dissolved:SBE mL/L 1.77 6.5 12 Oxygen:Dissolved:SBE umol/kg 77.1 283.2 13 Conductivity:Primary S/m 3.347387 3.500014 14 Number_of_bin_records n/a 182 241 15 Nitrate_plus_Nitrite umol/L 7.03 36.35 16 Flag:Nitrate_plus_Nitrite ' ' 17 Silicate umol/L 6.69 62.76 18 Flag:Silicate ' ' 19 Phosphate umol/L 0.829 2.542 20 Flag:Phosphate ' ' 21 Dimethyl_Sulphide nmol/L -99 -99 22 Flag:Dimethyl_Sulphide n/a 23 Dimethylsulfoniopropionate_Dissolved nmol/L 0 0.62 24 Flag:Dimethylsulfoniopropionate_Dissolved ' ' 25 Dimethylsulfoniopropionate_Total nmol/L 3.2 28 26 Flag:Dimethylsulfoniopropionate_Total ' ' 27 Chlorophyll:Extracted mg/m^3 0.1E-01 0.38 28 Flag:Chlorophyll:Extracted ' ' 29 Phaeo-Pigment:Extracted mg/m^3 0.6E-01 0.3 30 HPLC:Chl-c3 mg/m^3 0.43E-01 0.52E-01 31 HPLC:Chlide-a mg/m^3 0 0 32 HPLC:MgDVP mg/m^3 0.5E-02 0.7E-02 33 HPLC:Chl-c2 mg/m^3 0.41E-01 0.54E-01 34 HPLC:Chl-c1 mg/m^3 0 0 35 HPLC:Me-chlide mg/m^3 0 0 36 HPLC:Peri mg/m^3 0.8E-02 0.1E-01 37 HPLC:But-fuco mg/m^3 0.29E-01 0.41E-01 38 HPLC:Fuco mg/m^3 0.35E-01 0.46E-01 39 HPLC:Neo mg/m^3 0.6E-02 0.9E-02 40 HPLC:Pras mg/m^3 0.8E-02 0.13E-01 41 HPLC:Viola mg/m^3 0.2E-02 0.6E-02 42 HPLC:Hex-fuco mg/m^3 0.106 0.133 43 HPLC:Diadino mg/m^3 0.1E-01 0.16E-01 44 HPLC:Allo mg/m^3 0.5E-02 0.14E-01 45 HPLC:Diato mg/m^3 0 0.2E-02 46 HPLC:Zea mg/m^3 0.4E-02 0.9E-02 47 HPLC:Lut mg/m^3 0.1E-02 0.3E-02 48 HPLC:Gyr-de mg/m^3 0.2E-02 0.3E-02 49 HPLC:Chl-b mg/m^3 0.42E-01 0.66E-01 50 HPLC:c2-MGDG mg/m^3 0.7E-02 0.1E-01 51 HPLC:DVChl-a mg/m^3 0 0 52 HPLC:Chl-a mg/m^3 0.32 0.408 53 HPLC:B-Car mg/m^3 0.6E-02 0.7E-02 54 HPLC:TChl-a mg/m^3 0.32 0.408 55 Flag:HPLC n/a 56 Carbon:Dissolved:Organic uM 52.97 55.07 57 Flag:Carbon:Dissolved:Organic n/a 58 Carbon:Total:Organic uM 57.94 59.53 59 Flag:Carbon:Total:Organic n/a 60 CDOM:Available n/a -99 -99 61 Flag:CDOM:Available n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 -99 ' ' 10 F ' ' 6 14 -99 ' ' 5 I I 0 15 -99 ' ' 7 F R4 2 16 -99 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 -99 ' ' 3 NQ C ' ' 19 -99 ' ' 8 F R4 3 20 -99 ' ' 3 NQ C ' ' 21 -99 ' ' 7 F R4 2 22 -99 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 -99 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 -99 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 -99 ' ' 3 NQ C ' ' 29 -99 ' ' 7 F R4 2 30 -99 ' ' 8 F R4 3 31 -99 ' ' 8 F R4 3 32 -99 ' ' 8 F R4 3 33 -99 ' ' 8 F R4 3 34 -99 ' ' 8 F R4 3 35 -99 ' ' 8 F R4 3 36 -99 ' ' 8 F R4 3 37 -99 ' ' 8 F R4 3 38 -99 ' ' 8 F R4 3 39 -99 ' ' 8 F R4 3 40 -99 ' ' 8 F R4 3 41 -99 ' ' 8 F R4 3 42 -99 ' ' 8 F R4 3 43 -99 ' ' 8 F R4 3 44 -99 ' ' 8 F R4 3 45 -99 ' ' 8 F R4 3 46 -99 ' ' 8 F R4 3 47 -99 ' ' 8 F R4 3 48 -99 ' ' 8 F R4 3 49 -99 ' ' 8 F R4 3 50 -99 ' ' 8 F R4 3 51 -99 ' ' 8 F R4 3 52 -99 ' ' 8 F R4 3 53 -99 ' ' 8 F R4 3 54 -99 ' ' 8 F R4 3 55 -99 ' ' 3 NQ C ' ' 56 -99 ' ' 7 F R4 2 57 -99 ' ' 3 NQ C ' ' 58 -99 ' ' 7 F R4 2 59 -99 ' ' 3 NQ C ' ' 60 -99 ' ' 3 I I 0 61 -99 ' ' 3 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2019-001 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P12 EVENT NUMBER : 38 LATITUDE : 48 58.25000 N ! (deg min) LONGITUDE : 130 40.03000 W ! (deg min) WATER DEPTH : 3242 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 5013 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 3234 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1396DR PAR/Irradiance:Biospherical/Licor ' ' 70613 Altimeter ' ' 62355 $END $REMARKS Software Version Seasave V 7.26.7.107 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.2 2019/05/10 15:55:46 3979 3979 CLEAN 5.2.3 2019/05/10 15:56:27 3979 3979 ADDSAMP 3.6 2019/05/10 16:00:44 3979 3979 BINAVE 4.2 2019/05/10 16:01:15 3979 17 MERGE 3.5 2019/06/26 15:11:40 17 17 CLEAN 5.2.3 2019/06/26 15:11:49 17 17 CALIB 12.0 2019/06/26 15:12:01 17 17 SORT 3.6 2019/06/26 15:12:12 17 17 REMOVECH 8.2 2019/06/26 15:13:40 17 17 CHGUNITS 3.1.1 2019/06/26 15:14:06 17 17 CHGUNITS 3.1.1 2019/06/26 15:14:27 17 17 REORDER 1.3.1 2019/06/26 15:14:35 ? ? HDREDIT2 3.1.1 2019/06/26 15:14:43 ? ? SORT 3.6 2023/03/12 15:42:07 17 17 REORDER 1.3.1 2023/03/12 15:43:18 ? ? MERGE 3.6 2023/03/12 16:04:50 17 17 SORT 3.6 2023/03/12 16:06:31 17 17 CLEAN 5.3 2023/03/12 16:06:48 17 17 HDREDIT2 3.2 2023/03/19 13:58:48 ? ? REMOVECH 8.2 2023/03/19 14:01:31 17 17 HDREDIT2 3.2 2023/03/19 14:03:05 ? ? CLEAN 5.3 2023/03/28 10:17:06 17 17 SORT 3.6 2024/09/04 13:21:11 17 17 MERGE 3.6 2024/09/04 14:37:22 17 17 SORT 3.6 2024/09/04 14:37:47 17 17 CLEAN 5.3 2024/09/04 14:37:54 17 17 HDREDIT2 3.2 2024/09/05 09:12:20 ? ? HDREDIT2 3.2 2024/09/05 09:14:45 ? ? SORT 3.6 2024/09/05 09:54:14 17 17 $END $REMARKS -CLEAN functions: 2019/05/10 15:56:20 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2019-001\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2019/06/26 15:11:40 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Sample_number, Temperature:Draw, Salinity:Bottle, Flag:Salinity:Bottle, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide, Dimethylsulfoniopropionate_Dissolved, Flag:Dimethylsulfoniopropionate_Dissolve, Dimethylsulfoniopropionate_Total, Flag:Dimethylsulfoniopropionate_Total Primary file : P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.samavg Secondary file: P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.mrgcln1s -------------------------------------------------------------------------- -SORT parameters: 2019/06/26 15:06:37 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2019/06/26 15:11:48 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* -CALIB parameters: 2019/06/26 15:12:01 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2019-001\Processing\doc\2019-001-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Salinity:T0:C0 PSS-78 10 0.2000000E-02 0.1000000E+01 19 Oxygen:Dissolved:SBE mL/L 10 0.2750000E-01 0.1029900E+01 -SORT parameters: 2019/06/26 15:12:12 Sorted in ascending order of channel Press* -REMOVECH 2019/06/26 15:13:40 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 - No units changed -HEADER EDITS: 2019/06/26 15:14:43 Applied edit header: P:\Cruise_Data_Processing\2019-001\Processing\doc\HYDRO\2019-001-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 8: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 15: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 17: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 20: Silicate [umol/L] Units: ==> umol/L Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 24: Dimethyl_Sulphide [nmol/L] Units: ==> nmol/L Channel 25: Flag:Dimethyl_Sulphide [n/a] Units: ==> n/a Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 12: Conductivity:Primary [S/m] Format: F11.6 ==> F10.6 Channel 26: Dimethylsulfoniopropionate_Dissolved [nmol/L] Units: ==> nmol/L Channel 28: Dimethylsulfoniopropionate_Total [nmol/L] Units: ==> nmol/L -SORT parameters: 2023/03/12 15:42:07 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2023/03/12 16:04:50 Merge Channel: Sample_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: HPLC:Chl-c3, HPLC:Chlide-a, HPLC:MgDVP, HPLC:Chl-c2, HPLC:Chl-c1, HPLC:Me-chlide, HPLC:Peri, HPLC:Pheide-a, HPLC:But-fuco, HPLC:Fuco, HPLC:Neo, HPLC:Pras, HPLC:Viola, HPLC:Hex-fuco, HPLC:Diadino, HPLC:Allo, HPLC:Diato, HPLC:Zea, HPLC:Lut, HPLC:Gyr-de, HPLC:Chl-b, HPLC:c2-MGDG, HPLC:DVChl-a, HPLC:Phe, HPLC:Chl-a, HPLC:B-Car, HPLC:B-Car, HPLC:TChl-a, Flag:HPLC Primary file : C:\Users\jared\OneDrive\Documents\DFO\HPLC\2019-001\Processing\IOS\2019-001-0038. che2 Secondary file: C:\Users\jared\OneDrive\Documents\DFO\HPLC\2019-001\Processing\IOS\2019-001-0038. hplc 6 secondary records matched to primary records. -SORT parameters: 2023/03/12 16:06:31 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2023/03/12 16:06:48 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2023/03/19 13:58:48 Applied edit header: C:\Users\jared\OneDrive\Documents\DFO\HPLC\2019-001\2019-001-hdr1.txt -REMOVECH 2023/03/19 14:01:31 The following CHANNEL(S) were removed: HPLC:B-Car -HEADER EDITS: 2023/03/19 14:03:05 Applied edit header: C:\Users\jared\OneDrive\Documents\DFO\HPLC\2019-001\2019-001-hdr2.txt Channel 30: HPLC:Chl-c3 [mg/m^3] Units: ==> mg/m^3 Channel 31: HPLC:Chlide-a [mg/m^3] Units: ==> mg/m^3 Channel 32: HPLC:MgDVP [mg/m^3] Units: ==> mg/m^3 Channel 33: HPLC:Chl-c2 [mg/m^3] Units: ==> mg/m^3 Channel 34: HPLC:Chl-c1 [mg/m^3] Units: ==> mg/m^3 Channel 35: HPLC:Me-chlide [mg/m^3] Units: ==> mg/m^3 Channel 36: HPLC:Peri [mg/m^3] Units: ==> mg/m^3 Channel 37: HPLC:But-fuco [mg/m^3] Units: ==> mg/m^3 Channel 38: HPLC:Fuco [mg/m^3] Units: ==> mg/m^3 Channel 39: HPLC:Neo [mg/m^3] Units: ==> mg/m^3 Channel 40: HPLC:Pras [mg/m^3] Units: ==> mg/m^3 Channel 41: HPLC:Viola [mg/m^3] Units: ==> mg/m^3 Channel 42: HPLC:Hex-fuco [mg/m^3] Units: ==> mg/m^3 Channel 43: HPLC:Diadino [mg/m^3] Units: ==> mg/m^3 Channel 44: HPLC:Allo [mg/m^3] Units: ==> mg/m^3 Channel 45: HPLC:Diato [mg/m^3] Units: ==> mg/m^3 Channel 46: HPLC:Zea [mg/m^3] Units: ==> mg/m^3 Channel 47: HPLC:Lut [mg/m^3] Units: ==> mg/m^3 Channel 49: HPLC:Chl-b [mg/m^3] Units: ==> mg/m^3 Channel 51: HPLC:DVChl-a [mg/m^3] Units: ==> mg/m^3 Channel 52: HPLC:Chl-a [mg/m^3] Units: ==> mg/m^3 Channel 53: HPLC:B-Car [mg/m^3] Units: ==> mg/m^3 Channel 54: HPLC:TChl-a [mg/m^3] Units: ==> mg/m^3 Channel 50: HPLC:c2-MGDG [mg/m^3] Units: ==> mg/m^3 Channel 48: HPLC:Gyr-de [mg/m^3] Units: ==> mg/m^3 -CLEAN functions: 2023/03/28 10:17:06 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Change character data from " " to "0" in channels Flag:* -SORT parameters: 2024/09/04 13:21:11 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2024/09/04 14:37:22 Merge Channel: Sample_Number Merge Scheme Used: 4: Add Secondary to Matching Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Organic, Flag:Carbon:Dissolved:Organic, Carbon:Total:Organic, Flag:Carbon:Total:Organic, CDOM:Available, Flag:CDOM:Available Primary file : C:\Users\huntingtons\Desktop\Additions\Carbon Additions\2019-001\Processing\IOS\ 2019-001-0038.srt Secondary file: C:\Users\huntingtons\Desktop\Additions\Carbon Additions\2019-001\Processing\IOS\ 2019-001-0038.car 2 secondary records matched to primary records. -SORT parameters: 2024/09/04 14:37:47 Sorted in ascending order of channel Pressure -CLEAN functions: 2024/09/04 14:37:54 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2024/09/05 09:12:20 Applied edit header: C:\Users\huntingtons\Desktop\Additions\Carbon Additions\2019-001\Processing\ DOC\2019-001_header1.txt -HEADER EDITS: 2024/09/05 09:14:45 Applied edit header: C:\Users\huntingtons\Desktop\Additions\Carbon Additions\2019-001\Processing\ DOC\2019-001_header2.txt -SORT parameters: 2024/09/05 09:54:14 Sorted in ascending order of channel Pressure $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2019-001\2019-001-0038.hex Software Version Seasave V 7.26.7.107 Temperature SN = 2023 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Feb 08 2019 15:18:10 NMEA Latitude = 48 58.25 N NMEA Longitude = 130 40.03 W NMEA UTC (Time) = Feb 08 2019 15:15:51 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Tully: 2019-001 Station: P12 Depth: 3242 System UTC = Feb 08 2019 15:18:10 # nquan = 20 # nvalues = 3979 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = depSM: Depth [salt water, m] # name 5 = t090C: Temperature [ITS-90, deg C] # name 6 = t190C: Temperature, 2 [ITS-90, deg C] # name 7 = c0S/m: Conductivity [S/m] # name 8 = c1S/m: Conductivity, 2 [S/m] # name 9 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 10 = flSP: Fluorescence, Seapoint # name 11 = sbeox0V: Oxygen raw, SBE 43 [V] # name 12 = par: PAR/Irradiance, Biospherical/Licor # name 13 = altM: Altimeter [m] # name 14 = dz/dtM: Descent Rate [m/s] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 19 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Feb 08 2019 15:15:51 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2023 # 06-Sep-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.11048941e-003 # 6.24651386e-004 # 1.97786660e-005 # 1.89356115e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 06-Sep-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22550040e+000 # 5.08226275e-001 # -5.91965887e-004 # 5.42751175e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 13-Mar-18 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99994571 # 0.01092 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 5013 # 02-Sep-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36842897e-003 # 6.37960145e-004 # 2.10239596e-005 # 1.77320718e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 06-Sep-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62774811e+000 # 1.47740759e+000 # -2.06393864e-003 # 2.42854326e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 3234 # 16-Feb-18 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.5104e-001 # -0.5533 # -4.1134e-003 # 1.8160e-004 # -2.7648e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6500e-002 # 1.2200 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # # # 1 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460000 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # datcnv_date = May 10 2019 15:52:05, 7.26.7.129 # datcnv_in = P:\Cruise_Data_Processing\2019-001\RAW\CTD\2019-001-0038.hex P:\Cr uise_Data_Processing\2019-001\Processing\doc\2019-001-ctd2.XMLCON # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Comments from secondary file: P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.mrgcln1s -------------------------------------------------------------------------- Comments from secondary file: P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.dms --------------------------------------------------------------------- Sample_Number 150: DMS: value not trusted due to instrument problems Sample_Number 151: DMS: value not trusted due to instrument problems Sample_Number 152: DMS: value not trusted due to instrument problems Sample_Number 153: DMS: value not trusted due to instrument problems Sample_Number 154: DMS: value not trusted due to instrument problems Sample_Number 156: DMS: value not trusted due to instrument problems Sample_Number 157: DMS: value not trusted due to instrument problems Sample_Number 158: DMS: value not trusted due to instrument problems Sample_Number 159: DMS: value not trusted due to instrument problems Sample_Number 160: DMS: value not trusted due to instrument problems Sample_Number 161: DMS: value not trusted due to instrument problems Sample_Number 162: DMS: value not trusted due to instrument problems Sample_Number 163: DMS: value not trusted due to instrument problems Sample_Number 164: DMS: value not trusted due to instrument problems Comments from secondary file: P:\Cruise_Data_Processing\2019-001\Processing\hydro\2019-001-0038.dmsp ---------------------------------------------------------------------- Sample_Number 151: DMPS-T:suspect contamination Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 ~2 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.01-1.56ug/l in 102 samples. Average %CV for this cruise was 4.17% with 3 out of 53 duplicate pairs having a CV>10% and 0 out of 53 duplicate pairs having a CV>30%. Our average dataset %CV is 3.80% for 2013 - 2018 so the overall quality of this dataset is very good. For details see worksheet “CV%” in file QF2019-001CHL*.xls. HPLC samples were filtered onto 47mm GF/F filters and stored at -80C prior to analysis Samples were extracted in 95% methanol at -20C for 24 hours in the lab and analyzed on a WATERS 2695 HPLC separations system as detailed in Nemcek and Pena, 2014. Analysis was performed ~5 months after collection The average of two samples is reported. Variability is assessed as the %CV (std dev/mean*100) for duplicate pairs. All pigments below the limit of detection (LOD) are assigned a zero value. TChl-a is the sum of Chl-a, DVchl-a, Chlide-a and Me-chlide For further information see file QF 2019-001HPLC*.xlsx. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2019-001OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab using two different Guildline 8400B Salinometers standardized with IAPSO standard seawater. The first 51 samples were analyzed using salinometers s/n 68572 within 19-34 days of collection. The remainder of the samples were analyzed using salinometer s/n #69086 within 29-47 days of collection. For details including a duplicate analysis, see document QF2019-001SAL*.xls. 51 Salinity:Bottle values required recalculation due to non-linearity in the Autosal s/n 68572. See the notes in the above document for more details. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. Some samples were collected using polypropylene bottles instead of nutrient tubes due to a limit of supply for additional stations. Two stations were compared with both nutrient tubes and polypropylene bottles. For details, including a duplicate analysis and a comparison of 2 stations that had samples from both polypropylene bottles and nutrient tubes, see document QF2019-001nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100 deg C (with a dewar containing boiling water) onto a Chromasorb 330 column which eluted onto a Flame Photometric Detector (FPD). All samples were run as soon as possible after being collected. For more detail see file "2019-001 DMS report.doc" and for data and duplicate analysis see "DMS summary (2019-001).xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.1nmol/L. DMSP-D: Approximately 50-75mL of seawater was allowed to flow directly from the niskin into a filtration funnel containing a 0.7um GF/F filter. The first 3.5mL was collected in a polypropylene tube (15mL) containing 50uL of a 50% sulphuric acid solution. DMPS-T: 3.5mL of seawater was collected directly from the niskin into a polypropylene tube (15mL) containing 50uL of a 50% sulphuric acid solution. DMSP-D and DMSP-T: Samples are stored in the dark at 4 degrees C for a minimum of 24 hours. They are hydrolized and analyzed later at the Institute of Ocean Sciences. The minimum detectable level is 0.1 nM, so “0” values should be interpreted as <0.1 nM. For details on analysis and raw data, see document "2019-001 dmsp QF summary.xls. DOC and TOC samples were collected in 80 mL polycarbonate bottles and frozen until analysis. DOC samples were filtered inline from the Niskin bottles, using acid-washed filter holders and tubing and pre-combusted Whatman 25 mm GF/C filters (~1.2 ?m pore size). For analysis, samples were thawed and acidified with 4M HCl at a ratio of 100 uL HCL to 40 mL seawater. DOC samples were collected for depths <250 meters, and TOC/TDN samples were collected for depths >250 meters. For full details on analysis and processing see: Johannessen, S., Fassbender, A. J., Long, J. S., Wright, C. (2021) DOC and TOC of seawater collected during CCGS John P. Tully cruises in the northeast Pacific Ocean from Vancouver Island to Station P from 2018 to 2020. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://www.bco-dmo.org/dataset/865829 Non-OSD researchers needing access to the data should send a request to: DFO.PACSCIIOSData-DonneesISOSCIPAC.MPO@dfo-mpo.gc.ca The following samples were collected on Cruise 2019-001. These were collected as part of the EXPORTS Program, in collaboration with Andrea Fassbender (NOAA). Cruise log and sampling logs are available upon request. Water samples for CDOM analysis were passed through a Millipore Opticap XL Durapore 0.22 µm inline filter cartridge (Product No. KVGLA04HH3) into 125 ml amber glass bottles, directly from the original Niskin bottles. Samples were refrigerated and returned to the Institute of Ocean Sciences, where they were analyzed within one year of collection. Spectral absorbance (280-700 nm at 1nm resolution) was measured with a HP Agilent 8453 spectrophotometer, using a quartz cell with a 10-cm pathlength. Absorbance, ACDOM (dimensionless), was converted to the absorption coefficient, aCDOM (m-1): aCDOM(l) = ACDOM(l)x2.303/pathlength, where l is wavelength (See Johannessen and Miller, 2001 and Stedmon et al., 2000). Spectral absorption was measured against a distilled water blank, but no offset correction was applied. Cruise logs, sampling logs and other data products from this cruise are available electronically on request from the IOS data archive (http://www-sci.pac.dfo-mpo.gc.ca/osap/data/default_e.htm) or from the authors. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Johannessen, S. C. and Miller, W. L. 2001. Quantum yield for the photochemical production of dissolved inorganic carbon in seawater. Marine Chemistry 76: 271-283. 6. Stedmon, C.A., Markager, S., Kaas, H. 2000. Optical properties and signatures of chromophoric dissolved organic matter (CDOM) in Danish coastal waters. Est. Coast. Shelf Sci. 51:567-578. 5. Nemcek, N. and Peña, M.A. 2014. Institute of Ocean Sciences Protocols for Phytoplankton Pigment Analysis by HPLC. Can. Tech. Rep. Fish. Aquat. Sci. 3117: x + 80 p. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2019-001_Processing_Report.doc. --------------------------------------------------------------------------------- Comments from secondary file: C:\Users\huntingtons\Desktop\Additions\Carbon Additions\2019-001\Processing\IOS\2019-001-0038.car --------------------------------------------------------------------------- Sample_Number 165: CDOM: value not reported Sample_Number 166: TOC: duplicate not sampled, CDOM: value not reported *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.2E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.275E-01 1.0299) $END !-1-- 2- 3- --4--- --5--- ---6---- --7-- ---8--- --9--- ---10--- --11-- --12- ----13--- -14- --15-- 16 --17-- 18 ---19-- 20 --21-- 22 --23-- 24 --25-- 26 --27-- 28 --29-- ---30-- ---31-- ---32-- ---33-- ---34-- ---35-- ---36-- ---37-- ---38-- ---39-- ---40-- ---41-- ---42-- ---43-- ---44-- ---45-- ---46-- ---47-- ---48-- ---49-- ---50-- ---51-- ---52-- ---53-- ---54-- 55 --56-- 57 --58-- 59 60 61 !Samp Bo Bo Pressu Depth Temperat Trans Fluores PAR Salinity Oxygen Oxyge Conductiv Numb Nitrat Fl Silica Fl Phospha Fl Dimeth Fl Dimeth Fl Dimeth Fl Chloro Fl Phaeo- HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC:B- HPLC: Fl Carbon Fl Carbon Fl CD Fl !le_ tt tt re ure: missi cence: :T0:C0 : n: ity: er_o e_ ag te ag te ag yl_ ag ylsulf ag ylsulf ag phyll: ag Pigmen Chl-c3 Chlide- MgDVP Chl-c2 Chl-c1 Me- Peri But- Fuco Neo Pras Viola Hex- Diadino Allo Diato Zea Lut Gyr-de Chl-b c2-MGDG DVChl-a Chl-a Car TChl-a ag : ag : ag OM ag !Numb ~u ~u Primary vity URU: Dissol Disso Primary ~bin plus_ ~t ~i ~p Sulphi ~p ~piona ~s ~oprop ~T Extrac ~a t: a chlide fuco fuco : Dissol ~g Total: ~g ~l ~l !er mb en Seapoin ved: lved: _rec Nitrit ri ca ha de hi te_Dis ol ionate ot ted ct Extrac HP ved:Or an Organi an ab ab ! er ce t SBE SBE ords e te te te de solved ve _Total al ed ted LC ganic ic c ic le le !---- -- -- ------ ------ -------- ----- ------- ------ -------- ------ ----- --------- ---- ------ -- ------ -- ------- -- ------ -- ------ -- ------ -- ------ -- ------ ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- -- ------ -- ------ -- -- -- *END OF 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