*2018/04/12 16:17:17.25 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/10/04 16:01:39.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 96 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 7BC1E2BA NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 5.308 99.747 2 Depth metres 5.263 98.877 3 Temperature:Primary 'deg C (ITS90)' 7.4103 10.0157 4 Fluorescence:URU:Wetlabs mg/m^3 0.11E-01 5.887 5 pH:SBE:Nominal n/a 8.428 8.747 6 Salinity:T0:C0 PSS-78 31.4738 33.3429 7 Oxygen:Dissolved:SBE mL/L 2.117 5.636 8 Oxygen:Dissolved:SBE umol/kg 92.10883 245.6622 9 Number_of_bin_records n/a 6 16 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-78\Processing\derive\2017-78-0073.cnv $END *ADMINISTRATION MISSION : 2017-78 AGENCY : PBS, Ecosystem Sciences Division, Nanaimo, B.C. COUNTRY : Canada PROJECT : Coastal Ocean Salmon SCIENTIST : King J. PLATFORM : Sea Crest *LOCATION GEOGRAPHIC AREA : Queen Charlotte Strait STATION : QCSD18 EVENT NUMBER : 73 LATITUDE : 51 13.35600 N ! (deg min) LONGITUDE : 127 51.37600 W ! (deg min) WATER DEPTH : 111 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE25plus SERIAL NUMBER : 404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0464 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS Software Version 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.2 2018/04/11 13:55:25 2946 2946 CLEAN 5.2.2 2018/04/11 13:55:34 2946 2946 MERGEHDR 1.3 2018/04/11 13:55:43 2946 2946 ADTIMCH 4.4 2018/04/11 13:55:58 2946 2946 CLIP 1.3 2018/04/11 13:56:06 2946 2357 SHIFTDAT 3.4 2018/04/11 13:56:13 2357 2357 DELETE 6.3 2018/04/11 13:56:20 2357 799 CTDEDIT 5.2.3 2018/04/11 14:15:34 799 799 FILTERS 4.3 2018/04/12 14:10:05 799 799 CALIB 11.9 2018/04/12 14:40:28 799 799 BINAVE 4.2 2018/04/12 14:40:48 799 96 REMOVECH 8.2 2018/04/12 14:44:11 96 96 CHGUNITS 3.1.1 2018/04/12 14:44:16 96 96 REORDER 1.3.1 2018/04/12 14:44:26 ? ? HDREDIT2 3.1.1 2018/04/12 16:17:17 ? ? $END $REMARKS -CLEAN functions: 2018/04/11 13:55:30 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure:StrainGauge Set event to last 4 characters of file name -The following ADTIMCH parameters were used. Add 7.00 hours to times in header file section -The following CLIP parameters were used. Clip by Record Number Limits First Record,Last Record = 590, 50000 Time Not Available in File -The following SHIFT parameters were used. Shift Channel: pH:SBE [pH Units] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 10.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 9 points) will be deleted. Drop rate applies in the range 10.00 to 89.88 dbars Sample interval (from FILE section of header) = 0.125 seconds. -CTDEDIT v5.2.3 2018/04/11 14:15:34 8 changes in channel Salinity:T0:C0 -The following FILTER parameters were used. Median filter was used. Filter width = 5 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -CALIB parameters: 2018/04/12 14:40:28 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-78\Processing\doc\2017-78-recal1.CCF Calibration limited to records where Fluorescence:URU:Wetlabs:ECO-AFL between: -5 and 0 8 records, in 4 blocks, were within the limits. 791 records were outside the limits. Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 6 Fluorescence:URU:Wetlabs:ECO- mg/m^3 10 0.0000000E+00 0.0000000E+00 -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2018/04/12 14:44:11 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2018/04/12 16:17:17 Applied edit header: P:\Cruise_Data_Processing\2017-78\Processing\doc\2017-78-HDR.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 4: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 5: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Users\WaterProperties-16\Desktop\2017-78\2017-78001003.hex Software Version 1.59 Temperature SN = 2449 Conductivity SN = 1764 System UpLoad Time = Oct 06 2017 10:13:59 QCSD 18-4/10/17 ds SBE 25 CTD V 4.1c SN 0404 10/06/17 09:13:52.719 external pressure sensor, range = 10153 psia, tcval = 37 xtal = 9437232 clk = 32767.874 vmain = 11.7 iop = 212 vlith = 5.0 ncasts = 10 samples = 37732 free = 607241 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 3 10/04 09:01:39 smpls 14639 to 17584 nv = 3 avg = 1 stp = switch of S> # nquan = 12 # nvalues = 2946 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = depSM: Depth [salt water, m], lat = 49.00 # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = ph: pH # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = sal00: Salinity, Practical [PSU] # name 10 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 11 = flag: flag # span 0 = 1, 2946 # span 1 = -0.925, 99.877 # span 2 = -0.917, 99.005 # span 3 = 7.4087, 10.0249 # span 4 = 0.554212, 3.521759 # span 5 = -0.3120, 64.3388 # span 6 = 0.0000, 1.9853 # span 7 = 6.967, 8.749 # span 8 = -1.418, 1.398 # span 9 = 4.3180, 33.3438 # span 10 = -2.0470, 19.3054 # span 11 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Oct 04 2017 09:01:39 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2449 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35536976e-003 # 6.43861843e-004 # 2.35988525e-005 # 2.27425418e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 23-Feb-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15782044e+000 # 4.88269411e-001 # -7.82043110e-004 # 6.18774318e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0464 # 28-Feb-17 # 7.973872e+002 # -2.072374e-001 # 2.547327e-007 # 0.00000 # # # # # # 0852 # 08-Mar-17 # 4.5991 # 2.5690 # # # # # # 1176 # 02-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.1597e-001 # -0.5257 # -4.5701e-003 # 2.1508e-004 # -3.4602e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 07-Mar-2017 # 1.30000000e+001 # # 0.0240 # # # # datcnv_date = Apr 10 2018 16:40:36, 7.23.2 [datcnv_vars = 9] # datcnv_in = P:\Cruise_Data_Processing\2017-78\Processing\rename\2017-78-0073.h ex P:\Cruise_Data_Processing\2017-78\Processing\doc\2017-78-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Apr 11 2018 13:52:30, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2017-78\Processing\convert\2017-78-0073 .cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 5 # wfilter_action depSM = cosine, 5 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Apr 11 2018 13:52:44, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-78\Processing\wfilter\2017-78-007 3.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Apr 11 2018 13:54:33, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-78\Processing\align\2017-78-0073.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Apr 11 2018 13:54:52, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2017-78\Processing\celltm\2017-78-0073.c nv P:\Cruise_Data_Processing\2017-78\Processing\doc\2017-78-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to clean salinity. Data Processing Notes: ---------------------- The length of the surface soaks were shorter than recommended with many being less than 75 seconds. This does not allow enough time for equilibration of pumped channels. The soaks were generally at about 5-6m with no return to the surface before the full cast was run. Fluorescence, Dissolved Oxygen and pH:SBE data are nominal and unedited, except that some records were removed in editing temperature and salinity. Channel Fluorescence:URU:Wetlabs had some very small negative values in deep water which were set to 0 using program Calibrate. There was no deep salinity bottle sampling during this cruise or previous cruises using this equipment in 2017. An inter-ship comparison of 2 casts from a June 2017 cruise using these sensors with a cast from a cruise that did include calibration sampling, suggested that the salinity values from this CTD were reasonably accurate. There was near-surface salinity sampling during this cruise but the results of a comparison with the CTD data are considered unreliable. An initial examination of an early 2018 cruise with the same equipment and deep sampling suggests that the CTD salinity values are quite accurate. There was no dissolved oxygen sampling during this cruise or previous cruises using this equipment in 2017. An inter-ship comparison of 2 casts from a June 2017 cruise using these sensors with a cast from a cruise that did include calibration sampling, suggested that dissolved oxygen values were likely low by up to 4%. That error is likely to have increased with time. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see processing report: 2017-78-Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------------------- -------- ---- ------ ------------ Fluorescence:URU:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0 0) $END !--1--- --2--- ---3---- ---4--- ---5--- ---6---- --7--- --8-- -9-- !Pressu Depth Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ ------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 5.3 5.3 10.0043 5.657 8.747 31.4738 5.64 245.7 16 6.0 5.9 10.0157 5.132 8.747 31.4883 5.54 241.5 13 7.0 7.0 9.9556 5.887 8.720 31.4939 5.26 229.4 12 8.0 7.9 9.8830 5.300 8.678 31.4917 4.97 216.8 9 9.1 9.0 9.8271 3.580 8.645 31.5014 4.73 206.3 9 10.0 9.9 9.7856 3.228 8.625 31.5151 4.59 200.2 9 11.0 10.9 9.7766 2.339 8.617 31.5270 4.54 197.9 7 12.0 11.9 9.7666 2.200 8.615 31.5407 4.50 196.3 7 13.0 12.9 9.7452 2.374 8.611 31.5702 4.45 193.8 9 14.0 13.9 9.7290 1.932 8.608 31.5909 4.42 192.4 10 15.0 14.9 9.7237 2.375 8.606 31.6038 4.41 192.1 8 16.0 15.9 9.7308 2.405 8.602 31.6128 4.40 191.8 7 17.0 16.8 9.7487 1.988 8.602 31.6266 4.38 190.8 9 18.0 17.9 9.7311 1.849 8.603 31.6315 4.37 190.4 10 19.0 18.9 9.7312 1.992 8.600 31.6377 4.36 190.1 7 20.0 19.8 9.7357 1.617 8.600 31.6446 4.36 189.8 8 21.0 20.9 9.7379 1.710 8.599 31.6500 4.35 189.6 8 22.0 21.8 9.7409 1.890 8.599 31.6545 4.35 189.4 7 23.0 22.8 9.7438 1.575 8.596 31.6571 4.33 188.7 7 24.0 23.8 9.7489 1.357 8.592 31.6732 4.29 187.0 7 25.0 24.8 9.7497 1.318 8.588 31.7004 4.25 185.2 6 26.0 25.7 9.7344 1.162 8.586 31.7384 4.21 183.5 7 27.0 26.8 9.7170 0.851 8.585 31.7626 4.18 182.3 7 28.0 27.7 9.7096 0.615 8.581 31.7728 4.16 181.2 7 28.9 28.7 9.7026 0.632 8.580 31.7792 4.15 180.7 8 29.9 29.7 9.6944 0.493 8.580 31.7823 4.14 180.2 7 31.0 30.7 9.6769 0.488 8.581 31.7981 4.12 179.3 8 32.1 31.8 9.6675 0.566 8.580 31.8165 4.10 178.6 7 33.0 32.8 9.6671 0.736 8.578 31.8219 4.08 178.0 7 34.0 33.7 9.6687 0.937 8.577 31.8247 4.05 176.4 9 35.0 34.7 9.6463 0.536 8.572 31.8672 3.97 173.2 9 36.0 35.7 9.5885 0.440 8.567 31.9342 3.90 170.0 8 37.0 36.7 9.5604 0.378 8.564 31.9478 3.83 167.0 9 38.0 37.7 9.5140 0.394 8.560 32.0119 3.77 164.2 8 39.0 38.6 9.4815 0.316 8.558 32.0773 3.71 161.6 9 40.0 39.7 9.4572 0.260 8.555 32.1284 3.67 159.8 9 41.0 40.7 9.4512 0.214 8.552 32.1568 3.65 158.9 8 42.0 41.7 9.4490 0.212 8.554 32.1800 3.63 158.1 10 43.0 42.6 9.4515 0.206 8.554 32.2081 3.61 157.3 8 44.0 43.6 9.4589 0.160 8.558 32.2366 3.60 156.9 9 44.9 44.5 9.4696 0.184 8.557 32.2533 3.60 156.7 8 46.0 45.6 9.4801 0.164 8.560 32.2659 3.57 155.3 9 47.0 46.6 9.4749 0.160 8.558 32.3265 3.49 152.0 8 48.0 47.6 9.3769 0.157 8.552 32.4452 3.42 148.9 7 49.0 48.6 9.3652 0.103 8.554 32.4710 3.38 147.3 9 50.0 49.6 9.3392 0.104 8.548 32.5090 3.34 145.3 9 51.0 50.5 9.2671 0.148 8.544 32.5299 3.33 145.0 10 52.0 51.5 9.2956 0.110 8.551 32.5497 3.35 146.0 10 53.0 52.5 9.3749 0.140 8.558 32.5845 3.36 146.3 8 54.0 53.5 9.3569 0.053 8.559 32.6151 3.34 145.4 8 55.0 54.5 9.3097 0.119 8.559 32.6306 3.33 144.9 6 55.9 55.4 9.3058 0.130 8.559 32.6321 3.31 144.0 6 57.0 56.5 9.2965 0.117 8.559 32.6354 3.28 142.8 7 58.0 57.5 9.2532 0.101 8.555 32.6542 3.24 141.3 7 59.0 58.5 9.1582 0.123 8.548 32.7085 3.19 139.0 8 60.0 59.5 9.0360 0.108 8.542 32.7339 3.15 137.0 11 61.0 60.5 8.9819 0.063 8.539 32.7603 3.12 135.8 10 62.0 61.4 8.9633 0.048 8.537 32.7706 3.09 134.5 9 63.0 62.5 8.9096 0.067 8.532 32.7856 3.06 133.2 7 64.0 63.5 8.8401 0.064 8.528 32.8016 3.04 132.5 6 65.0 64.4 8.8164 0.088 8.525 32.8060 3.03 131.9 6 66.0 65.4 8.8035 0.078 8.524 32.8093 3.02 131.3 7 67.0 66.4 8.7965 0.048 8.523 32.8098 3.00 130.7 7 68.0 67.4 8.7952 0.080 8.523 32.8106 2.98 130.0 9 69.0 68.4 8.7745 0.050 8.520 32.8143 2.93 127.6 10 70.0 69.4 8.6974 0.058 8.511 32.8329 2.86 124.5 9 71.0 70.4 8.5378 0.096 8.502 32.8747 2.82 122.6 7 72.0 71.4 8.4892 0.085 8.501 32.8977 2.80 121.8 7 73.0 72.4 8.4647 0.060 8.500 32.9079 2.79 121.2 7 74.0 73.3 8.4246 0.064 8.498 32.9191 2.77 120.6 6 75.0 74.3 8.4057 0.051 8.497 32.9235 2.75 119.9 7 76.0 75.3 8.3758 0.028 8.495 32.9373 2.73 119.1 7 77.0 76.3 8.3310 0.077 8.494 32.9558 2.70 117.4 8 78.0 77.3 8.2963 0.059 8.488 32.9662 2.65 115.2 7 79.0 78.3 8.1684 0.031 8.480 32.9955 2.60 113.1 8 80.0 79.3 8.0660 0.042 8.474 33.0203 2.55 111.0 7 80.9 80.2 7.9988 0.077 8.468 33.0484 2.50 108.7 8 82.0 81.3 7.8802 0.065 8.460 33.0702 2.44 106.1 9 83.0 82.3 7.7775 0.049 8.455 33.1141 2.40 104.5 8 84.0 83.2 7.7464 0.061 8.453 33.1318 2.39 104.0 8 85.0 84.3 7.7200 0.044 8.454 33.1399 2.38 103.7 7 86.1 85.3 7.7100 0.035 8.453 33.1440 2.38 103.6 7 87.0 86.3 7.7073 0.055 8.453 33.1457 2.38 103.7 7 88.1 87.3 7.7009 0.057 8.453 33.1487 2.38 103.4 8 89.0 88.3 7.6830 0.069 8.452 33.1550 2.37 103.3 8 90.0 89.2 7.6769 0.070 8.452 33.1594 2.36 102.8 11 91.0 90.2 7.6529 0.073 8.449 33.1807 2.32 100.9 11 92.0 91.2 7.5906 0.048 8.445 33.2218 2.29 99.6 9 93.0 92.2 7.5505 0.071 8.443 33.2475 2.26 98.5 8 94.0 93.2 7.5303 0.067 8.441 33.2607 2.24 97.5 8 95.0 94.2 7.4963 0.011 8.438 33.2841 2.22 96.5 9 96.0 95.1 7.4880 0.035 8.436 33.2899 2.20 95.9 10 97.0 96.2 7.4789 0.047 8.435 33.2969 2.19 95.2 11 98.0 97.1 7.4651 0.023 8.434 33.3061 2.17 94.4 9 99.0 98.2 7.4414 0.052 8.431 33.3219 2.14 93.2 12 99.7 98.9 7.4103 0.027 8.428 33.3429 2.12 92.1 10