*2017/12/08 15:47:11.20 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/07/02 15:46:32.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 39 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : F9348315 NUMBER OF CHANNELS : 12 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 2.01 39.738 2 Depth metres 1.987 39.394 3 Temperature:Secondary 'deg C (ITS90)' 10.3855 16.4963 4 Transmissivity %/metre 29.8 53.4 5 Fluorescence:URU:Seapoint mg/m^3 0.481 5.898 6 PAR uE/m^2/sec 0.187 986.128 7 PAR:Reference uE/m^2/sec 1576.585 2368.964 8 pH:SBE:Nominal n/a 8.562 9.043 9 Salinity:T1:C1 PSS-78 25.2146 28.4044 10 Oxygen:Dissolved:SBE mL/L 4.335 6.923 11 Oxygen:Dissolved:SBE umol/kg 189.4465 303.5586 12 Number_of_bin_records n/a 16 104 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-56\Pro $END *ADMINISTRATION MISSION : 2017-56 AGENCY : WVL, Ecosystem Sciences Division, Vancouver, B.C. COUNTRY : Canada PROJECT : Baynes Sound Shellfish Project SCIENTIST : Sutherland T. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Baynes Sound STATION : BS14 EVENT NUMBER : 57 LATITUDE : 49 31.13000 N ! (deg min) LONGITUDE : 124 48.73000 W ! (deg min) WATER DEPTH : 48 ALTIMETER (M) : 8.38 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 62355 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' '4565 QSP200L4S' Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.2.13 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/12/05 14:10:27 3301 3301 CLEAN 5.2.2 2017/12/05 14:11:02 3301 3301 SHIFTDAT 3.4 2017/12/06 10:48:03 3301 3301 SHIFTDAT 3.4 2017/12/06 11:23:56 3301 3301 SHIFTDAT 3.4 2017/12/06 11:24:33 3301 3301 SHIFTDAT 3.4 2017/12/06 11:39:01 3301 3301 DELETE 6.3 2017/12/06 11:52:53 3301 1277 CTDEDIT 5.2.3 2017/12/07 16:33:03 1277 1225 CALIB 11.9 2017/12/08 12:00:47 1225 1225 BINAVE 4.2 2017/12/08 12:01:04 1225 39 REMOVECH 8.2 2017/12/08 12:02:32 39 39 CHGUNITS 3.1.1 2017/12/08 12:03:36 39 39 REORDER 1.3.1 2017/12/08 12:04:10 ? ? HDREDIT2 3.1.1 2017/12/08 15:47:11 ? ? $END $REMARKS -CLEAN functions: 2017/12/05 14:10:31 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 50.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 29.90 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2017/12/07 16:33:03 52 records were deleted in this editing session. No data values were changed. -CALIB parameters: 2017/12/08 12:00:47 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Salinity:T1:C1 PSS-78 10 -0.3200000E-02 0.1000000E+01 19 Oxygen:Dissolved:SBE mL/L 10 0.6450000E-01 0.1039900E+01 -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/12/08 12:02:32 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2017/12/08 15:47:11 Applied edit header: P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F9.4 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 8: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-56\2017-56-0057.hex Software Version Seasave V 7.26.2.13 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 44 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 02 2017 08:48:47 NMEA Latitude = 49 31.13 N NMEA Longitude = 124 48.73 W NMEA UTC (Time) = Jul 02 2017 15:46:32 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 5 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Vector: 2017-56 Station: BS14 Depth: 48 System UTC = Jul 02 2017 15:48:47 # nquan = 20 # nvalues = 3301 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = depSM: Depth [salt water, m] # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = t190C: Temperature, 2 [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = c1S/m: Conductivity, 2 [S/m] # name 7 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 8 = flSP: Fluorescence, Seapoint # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = spar: SPAR/Surface Irradiance # name 12 = ph: pH # name 13 = altM: Altimeter [m] # name 14 = dz/dtM: Descent Rate [m/s] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 19 = flag: flag # span 0 = 1, 3301 # span 1 = 1.463, 39.901 # span 2 = 1.450, 39.557 # span 3 = 10.3798, 16.5819 # span 4 = 10.3758, 16.5402 # span 5 = 3.178273, 3.309598 # span 6 = 3.178774, 3.311148 # span 7 = 73.8745, 85.5767 # span 8 = 4.1514e-01, 6.6789e+00 # span 9 = 1.6435, 2.5495 # span 10 = 1.2295e-01, 1.3051e+03 # span 11 = 1.1026e+03, 2.3800e+03 # span 12 = 8.556, 9.074 # span 13 = 8.21, 100.00 # span 14 = -0.783, 0.925 # span 15 = 0, 1 # span 16 = 25.1507, 28.4074 # span 17 = 25.1892, 28.4137 # span 18 = 4.0878, 6.6891 # span 19 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 02 2017 15:49:01 [NMEA time, first data scan] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.8000e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # # # 0691 # 15-Jan-15 # 4.6262 # 2.5140 # # # # # # 4565 QSP200L4S # 16-Mar-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # # # 20518 # 21-MAR-2016 # 1627.06600000 # 1.00000000 # # # # datcnv_date = Dec 04 2017 16:19:03, 7.23.2 [datcnv_vars = 16] # datcnv_in = P:\Cruise_Data_Processing\2017-56\RAW\CTD\2017-56-0057.hex P:\Crui se_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Dec 05 2017 13:53:18, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2017-56\Processing\convert\2017-56-005 7.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM depSM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 05 2017 13:54:45, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-56\Processing\wildedit\2017-56-00 57.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Dec 05 2017 13:56:57, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-56\Processing\align\2017-56-0057.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 05 2017 13:58:40, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2017-56\Processing\celltm\2017-56-0057.c nv P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records near the surface. -------------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence:URU:Seapoint, pH:SBE, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. oxygen:Dissolved:SBE data are calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit is allowed. Recalibration was based on the results of cruise 2017-06 during which many samples were collected in areas where Niskin bottles are believed to flush well. There were sporadic problems with the primary plumbing that are severe near the surface. The secondary temperature and salinity channels were selected for archiving, but there is no alternative for the CTD dissolved oxygen channel. Profiles of DO sometimes make it obvious where there are problems. A further assessment was made by examining salinity profiles to identify the depth at which the two salinity channels are close enough that the dissolved oxygen sensor data are likely to be reliable. CTDEDIT was used to remove DO data with quality likely to be poor, but all the data should be considered of lower quality than usual. No estimate of DO accuracy has been made due to the many uncertainties in the comparison with bottles. For details on the processing see document: 2017-56_Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.32E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.645E-01 1.0399) $END !--1--- --2--- ---3---- --4-- ---5--- --6--- --7--- ---8--- ---9---- --10-- --11- -12- !Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Numb !re ure: missi cence: Refere Nominal :T1:C1 : n: er_o ! Secondar vity URU: nce Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- ---- *END OF HEADER 2.0 2.0 16.4963 34.2 2.076 986.1 2094.2 9.043 25.2146 6.92 303.6 42 3.0 3.0 15.5681 34.6 2.873 726.8 2042.2 8.958 25.6663 6.80 297.8 30 3.9 3.9 14.2299 32.9 3.323 505.7 1988.4 8.907 26.2603 6.57 287.5 16 5.0 5.0 13.2671 31.2 4.472 347.6 1921.2 8.856 26.7399 6.23 272.9 26 6.0 5.9 12.7086 30.5 5.898 239.1 1867.7 8.763 26.9608 5.84 255.5 28 7.0 6.9 12.1057 29.8 5.461 167.4 1830.6 8.696 27.2031 5.41 236.6 26 8.0 7.9 11.7434 31.7 4.323 115.7 1799.7 8.669 27.4090 5.12 224.0 27 9.0 8.9 11.6155 35.6 3.218 79.3 1771.9 8.633 27.4854 4.92 215.2 26 10.0 9.9 11.4103 40.7 2.666 55.5 1748.1 8.615 27.5829 4.71 206.2 27 11.0 10.9 11.3339 44.4 2.103 41.2 1726.0 8.611 27.6274 4.56 199.5 27 12.0 11.9 11.2258 45.3 1.662 32.1 1705.4 8.608 27.6930 4.51 197.2 26 13.0 12.9 11.1665 46.0 1.465 25.2 1682.5 8.605 27.7302 4.49 196.1 27 14.0 13.9 11.1268 46.2 1.230 19.9 1662.7 8.603 27.7563 4.46 194.9 26 15.0 14.9 11.1032 46.9 1.024 15.8 1643.9 8.604 27.7759 4.44 194.1 27 16.0 15.9 11.0772 47.0 1.220 12.6 1618.8 8.614 27.7923 4.44 194.3 26 17.0 16.8 11.0441 47.0 1.132 10.1 1592.7 8.615 27.8297 4.49 196.4 27 18.0 17.8 11.0062 47.4 0.984 8.1 1576.6 8.609 27.8701 4.52 197.8 27 19.0 18.8 10.9228 48.9 0.942 6.5 1582.6 8.614 27.9507 4.54 198.5 27 20.0 19.8 10.8805 49.9 0.822 5.3 1612.1 8.620 28.0036 4.58 200.2 27 21.0 20.8 10.8927 50.8 0.864 4.4 1659.9 8.618 28.0257 4.62 201.8 27 22.0 21.8 10.8888 51.5 0.783 3.8 1732.0 8.616 28.0300 4.62 202.1 27 23.0 22.8 10.8780 51.8 0.764 3.3 1823.3 8.606 28.0343 4.61 201.5 27 24.0 23.8 10.8238 51.9 0.750 2.9 1917.1 8.585 28.0695 4.56 199.2 27 25.0 24.8 10.7030 51.6 0.666 2.5 2002.3 8.574 28.1205 4.46 195.1 28 26.0 25.8 10.6510 51.4 0.575 2.2 2081.7 8.567 28.1364 4.39 191.7 27 27.0 26.8 10.6292 51.2 0.620 1.9 2142.3 8.562 28.1490 4.33 189.5 27 28.0 27.8 10.5826 51.1 0.596 1.6 2172.5 8.587 28.1774 4.33 189.4 28 29.0 28.7 10.5929 50.7 0.618 1.4 2181.0 8.599 28.2102 4.44 193.9 27 30.0 29.7 10.5824 51.2 0.657 1.2 2184.9 8.597 28.2592 4.53 197.8 28 31.0 30.7 10.5458 52.1 0.602 1.0 2166.2 8.596 28.2823 4.55 199.0 28 32.0 31.7 10.5248 52.4 0.571 0.8 2149.8 8.596 28.2978 4.57 199.5 28 33.0 32.7 10.4957 52.6 0.571 0.7 2168.9 8.594 28.3207 4.58 200.2 28 34.0 33.7 10.4472 52.8 0.505 0.6 2226.6 8.594 28.3569 4.59 200.6 28 35.0 34.7 10.4330 53.0 0.532 0.5 2306.2 8.593 28.3694 4.59 200.6 29 36.0 35.7 10.4304 53.4 0.489 0.4 2367.7 8.591 28.3726 4.59 200.6 31 37.0 36.7 10.4279 53.2 0.495 0.4 2369.0 8.590 28.3748 4.59 200.5 36 38.0 37.7 10.4177 52.7 0.503 0.3 2283.5 8.590 28.3822 4.59 200.5 47 39.0 38.7 10.4037 53.4 0.481 0.3 2094.8 8.589 28.3932 4.59 200.5 77 39.7 39.4 10.3855 53.0 0.485 0.2 1717.1 8.584 28.4044 4.57 199.5 104