*2017/12/08 15:47:11.17 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/07/02 15:09:15.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 35 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 8F73F7C5 NUMBER OF CHANNELS : 12 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 1.457 34.803 2 Depth metres 1.445 34.505 3 Temperature:Secondary 'deg C (ITS90)' 10.3221 17.1789 4 Transmissivity %/metre 23.2 51.7 5 Fluorescence:URU:Seapoint mg/m^3 0.452 6.322 6 PAR uE/m^2/sec 0.121 394.85 7 PAR:Reference uE/m^2/sec 826.45 838.37 8 pH:SBE:Nominal n/a 8.511 9.03 9 Salinity:T1:C1 PSS-78 24.952 28.3308 10 Oxygen:Dissolved:SBE mL/L 4.042 4.657 11 Oxygen:Dissolved:SBE umol/kg 176.614 203.6104 12 Number_of_bin_records n/a 1 54 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-56\Pro $END *ADMINISTRATION MISSION : 2017-56 AGENCY : WVL, Ecosystem Sciences Division, Vancouver, B.C. COUNTRY : Canada PROJECT : Baynes Sound Shellfish Project SCIENTIST : Sutherland T. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Baynes Sound STATION : BS11 EVENT NUMBER : 56 LATITUDE : 49 32.18000 N ! (deg min) LONGITUDE : 124 50.52000 W ! (deg min) WATER DEPTH : 42 ALTIMETER (M) : 7.79 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 62355 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' '4565 QSP200L4S' Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.2.13 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/12/05 14:10:27 3381 3381 CLEAN 5.2.2 2017/12/05 14:11:01 3381 3381 SHIFTDAT 3.4 2017/12/06 10:48:03 3381 3381 SHIFTDAT 3.4 2017/12/06 11:23:55 3381 3381 SHIFTDAT 3.4 2017/12/06 11:24:32 3381 3381 SHIFTDAT 3.4 2017/12/06 11:39:01 3381 3381 DELETE 6.3 2017/12/06 11:52:53 3381 1297 CTDEDIT 5.2.3 2017/12/07 16:29:30 1297 1128 CTDEDIT 5.2.3 2017/12/08 11:55:33 1128 1128 CALIB 11.9 2017/12/08 12:00:46 1128 1128 BINAVE 4.2 2017/12/08 12:01:04 1128 35 REMOVECH 8.2 2017/12/08 12:02:32 35 35 CHGUNITS 3.1.1 2017/12/08 12:03:36 35 35 REORDER 1.3.1 2017/12/08 12:04:10 ? ? HDREDIT2 3.1.1 2017/12/08 15:47:11 ? ? $END $REMARKS -CLEAN functions: 2017/12/05 14:10:31 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 50.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 25.03 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2017/12/07 16:29:30 169 records were deleted in this editing session. 259 changes in channel Oxygen:Dissolved:SBE -CTDEDIT v5.2.3 2017/12/08 11:55:33 132 changes in channel Oxygen:Dissolved:SBE -CALIB parameters: 2017/12/08 12:00:46 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Salinity:T1:C1 PSS-78 10 -0.3200000E-02 0.1000000E+01 19 Oxygen:Dissolved:SBE mL/L 10 0.6450000E-01 0.1039900E+01 -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/12/08 12:02:32 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2017/12/08 15:47:11 Applied edit header: P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F9.4 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 8: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-56\2017-56-0056.hex Software Version Seasave V 7.26.2.13 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 44 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 02 2017 08:10:57 NMEA Latitude = 49 32.18 N NMEA Longitude = 124 50.52 W NMEA UTC (Time) = Jul 02 2017 15:09:15 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 5 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Vector: 2017-56 Station: BS11 Depth: 42 System UTC = Jul 02 2017 15:10:57 # nquan = 20 # nvalues = 3381 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = depSM: Depth [salt water, m] # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = t190C: Temperature, 2 [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = c1S/m: Conductivity, 2 [S/m] # name 7 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 8 = flSP: Fluorescence, Seapoint # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = spar: SPAR/Surface Irradiance # name 12 = ph: pH # name 13 = altM: Altimeter [m] # name 14 = dz/dtM: Descent Rate [m/s] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 19 = flag: flag # span 0 = 1, 3381 # span 1 = 1.419, 35.032 # span 2 = 1.407, 34.730 # span 3 = 10.3234, 17.0996 # span 4 = 10.3134, 17.1955 # span 5 = 3.172601, 3.307783 # span 6 = 3.165692, 3.328931 # span 7 = 68.6840, 85.1756 # span 8 = 3.7851e-01, 8.0098e+00 # span 9 = 1.5568, 2.4249 # span 10 = 1.1338e-01, 3.9820e+02 # span 11 = 8.0857e+02, 8.4035e+02 # span 12 = 8.511, 9.040 # span 13 = 0.98, 40.63 # span 14 = -0.735, 0.925 # span 15 = 0, 1 # span 16 = 24.5509, 28.3351 # span 17 = 24.8591, 28.3478 # span 18 = 3.8105, 6.3883 # span 19 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 02 2017 15:11:11 [NMEA time, first data scan] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.8000e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # # # 0691 # 15-Jan-15 # 4.6262 # 2.5140 # # # # # # 4565 QSP200L4S # 16-Mar-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # # # 20518 # 21-MAR-2016 # 1627.06600000 # 1.00000000 # # # # datcnv_date = Dec 04 2017 16:19:02, 7.23.2 [datcnv_vars = 16] # datcnv_in = P:\Cruise_Data_Processing\2017-56\RAW\CTD\2017-56-0056.hex P:\Crui se_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Dec 05 2017 13:53:18, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2017-56\Processing\convert\2017-56-005 6.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM depSM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 05 2017 13:54:44, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-56\Processing\wildedit\2017-56-00 56.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Dec 05 2017 13:56:57, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-56\Processing\align\2017-56-0056.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 05 2017 13:58:40, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2017-56\Processing\celltm\2017-56-0056.c nv P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records corrupted by shed wakes near the bottom of the cast. Oxygen:Dissolved points were remove from the surface to 10.0db. Remarks from CTDEDIT: CTDEDIT was run a second time to remove more data from channel Oxygen:Dissolved:SBE to a depth of 12.9m. -------------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence:URU:Seapoint, pH:SBE, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. oxygen:Dissolved:SBE data are calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit is allowed. Recalibration was based on the results of cruise 2017-06 during which many samples were collected in areas where Niskin bottles are believed to flush well. There were sporadic problems with the primary plumbing that are severe near the surface. The secondary temperature and salinity channels were selected for archiving, but there is no alternative for the CTD dissolved oxygen channel. Profiles of DO sometimes make it obvious where there are problems. A further assessment was made by examining salinity profiles to identify the depth at which the two salinity channels are close enough that the dissolved oxygen sensor data are likely to be reliable. CTDEDIT was used to remove DO data with quality likely to be poor, but all the data should be considered of lower quality than usual. No estimate of DO accuracy has been made due to the many uncertainties in the comparison with bottles. For details on the processing see document: 2017-56_Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.32E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.645E-01 1.0399) $END !--1--- --2--- ---3---- --4-- ---5--- --6--- --7--- ---8--- ---9---- --10-- --11- -12- !Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Numb !re ure: missi cence: Refere Nominal :T1:C1 : n: er_o ! Secondar vity URU: nce Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- ---- *END OF HEADER 1.5 1.4 17.1789 34.9 2.149 394.9 838.4 9.030 24.9520 -99.00 -99.0 1 1.9 1.9 16.7387 35.5 2.452 358.9 838.4 9.001 25.1470 -99.00 -99.0 47 3.0 3.0 15.4113 34.9 3.896 241.0 838.4 8.997 25.7482 -99.00 -99.0 29 4.0 4.0 15.6029 31.0 3.958 166.9 838.4 8.979 25.6486 -99.00 -99.0 27 5.0 4.9 14.1239 30.1 5.263 114.9 838.4 8.936 26.3176 -99.00 -99.0 27 6.0 5.9 13.1109 25.0 5.405 79.0 838.2 8.915 26.7764 -99.00 -99.0 26 7.0 6.9 12.9957 23.2 5.792 54.5 837.9 8.876 26.8240 -99.00 -99.0 27 8.0 7.9 12.4277 25.4 6.322 36.7 837.8 8.840 27.0885 -99.00 -99.0 25 9.0 8.9 12.1159 27.7 4.580 25.0 838.4 8.803 27.2158 -99.00 -99.0 29 10.0 9.9 11.8100 32.6 3.364 17.4 838.4 8.772 27.3659 -99.00 -99.0 29 11.0 10.9 11.5598 37.5 2.647 12.7 837.6 8.726 27.5000 -99.00 -99.0 30 12.0 11.9 11.3749 40.4 2.035 9.7 836.4 8.690 27.6087 -99.00 -99.0 30 13.0 12.9 11.1979 42.7 1.689 7.7 836.4 8.655 27.7144 4.66 203.6 19 14.0 13.9 11.1328 44.6 1.239 6.1 836.4 8.631 27.7536 4.58 200.5 31 15.0 14.9 11.0747 45.7 1.034 4.9 836.4 8.618 27.7933 4.54 198.3 31 16.0 15.9 11.0248 47.0 0.979 4.0 836.4 8.609 27.8254 4.49 196.2 32 17.0 16.9 11.0013 47.1 0.935 3.2 834.8 8.602 27.8400 4.43 193.7 32 18.0 17.8 10.9775 48.0 0.786 2.6 834.4 8.596 27.8592 4.40 192.3 32 19.0 18.8 10.9618 48.5 0.785 2.2 834.4 8.591 27.8828 4.42 193.3 33 20.0 19.8 10.9163 48.5 0.723 1.8 833.3 8.588 27.9232 4.43 193.5 32 21.0 20.8 10.8650 49.0 0.864 1.5 832.4 8.581 27.9437 4.33 189.1 33 22.0 21.8 10.7503 48.7 0.790 1.2 832.4 8.567 28.0015 4.15 181.3 32 23.0 22.8 10.6923 46.7 0.679 1.0 832.4 8.561 28.0542 4.13 180.5 33 24.0 23.8 10.6707 46.8 0.633 0.9 832.4 8.560 28.1015 4.25 185.9 34 25.0 24.8 10.6863 47.6 0.641 0.7 831.2 8.557 28.1320 4.38 191.2 38 25.9 25.7 10.6426 48.3 0.651 0.6 830.4 8.556 28.1563 4.36 190.3 33 27.1 26.9 10.5668 49.3 0.649 0.5 829.8 8.558 28.2246 4.37 190.9 54 28.0 27.8 10.4925 50.6 0.571 0.4 828.4 8.554 28.2603 4.34 189.7 52 29.0 28.8 10.4957 51.5 0.608 0.3 828.4 8.555 28.2762 4.37 191.0 45 30.0 29.7 10.4462 51.7 0.529 0.3 828.4 8.547 28.2956 4.30 188.1 41 31.0 30.7 10.4142 51.0 0.490 0.2 828.4 8.544 28.3009 4.23 184.8 41 31.9 31.6 10.3909 51.5 0.473 0.2 827.9 8.543 28.3163 4.22 184.5 33 33.2 33.0 10.3629 50.6 0.586 0.2 826.5 8.518 28.3237 4.14 181.0 7 34.1 33.8 10.3300 50.1 0.464 0.1 826.5 8.513 28.3285 4.04 176.7 45 34.8 34.5 10.3221 50.4 0.452 0.1 826.5 8.511 28.3308 4.04 176.6 22