*2017/12/08 15:47:11.11 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/07/02 14:29:34.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 33 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : F7A393CF NUMBER OF CHANNELS : 12 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 3.022 34.604 2 Depth metres 2.995 34.31 3 Temperature:Secondary 'deg C (ITS90)' 10.1801 16.8066 4 Transmissivity %/metre 16.6 52.5 5 Fluorescence:URU:Seapoint mg/m^3 0.357 10.38 6 PAR uE/m^2/sec 0.5E-01 169.031 7 PAR:Reference uE/m^2/sec 538.38 542.516 8 pH:SBE:Nominal n/a 8.501 9.047 9 Salinity:T1:C1 PSS-78 25.2495 28.2839 10 Oxygen:Dissolved:SBE mL/L 3.356 7.153 11 Oxygen:Dissolved:SBE umol/kg 146.6414 313.3459 12 Number_of_bin_records n/a 13 54 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-56\Pro $END *ADMINISTRATION MISSION : 2017-56 AGENCY : WVL, Ecosystem Sciences Division, Vancouver, B.C. COUNTRY : Canada PROJECT : Baynes Sound Shellfish Project SCIENTIST : Sutherland T. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Baynes Sound STATION : BS5 EVENT NUMBER : 54 LATITUDE : 49 35.85000 N ! (deg min) LONGITUDE : 124 51.59000 W ! (deg min) WATER DEPTH : 42 ALTIMETER (M) : 7.25 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 62355 pH ' ' 0691 PAR/Irradiance:Biospherical/Licor ' ' '4565 QSP200L4S' Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.2.13 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/12/05 14:10:26 3249 3249 CLEAN 5.2.2 2017/12/05 14:11:00 3249 3249 SHIFTDAT 3.4 2017/12/06 10:48:02 3249 3249 SHIFTDAT 3.4 2017/12/06 11:23:54 3249 3249 SHIFTDAT 3.4 2017/12/06 11:24:31 3249 3249 SHIFTDAT 3.4 2017/12/06 11:39:00 3249 3249 DELETE 6.3 2017/12/06 11:52:52 3249 1221 CTDEDIT 5.2.3 2017/12/07 16:19:47 1221 1110 CALIB 11.9 2017/12/08 12:00:46 1110 1110 BINAVE 4.2 2017/12/08 12:01:03 1110 33 REMOVECH 8.2 2017/12/08 12:02:32 33 33 CHGUNITS 3.1.1 2017/12/08 12:03:36 33 33 REORDER 1.3.1 2017/12/08 12:04:10 ? ? HDREDIT2 3.1.1 2017/12/08 15:47:11 ? ? $END $REMARKS -CLEAN functions: 2017/12/05 14:10:31 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 50.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 25.12 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2017/12/07 16:19:47 111 records were deleted in this editing session. 15 changes in channel Salinity:T1:C1 112 changes in channel Oxygen:Dissolved:SBE -CALIB parameters: 2017/12/08 12:00:46 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Salinity:T1:C1 PSS-78 10 -0.3200000E-02 0.1000000E+01 19 Oxygen:Dissolved:SBE mL/L 10 0.6450000E-01 0.1039900E+01 -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/12/08 12:02:32 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2017/12/08 15:47:11 Applied edit header: P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F9.4 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Number_of_bin_records [n/a] Pad: ' ' ==> -99 Channel 8: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-56\2017-56-0054.hex Software Version Seasave V 7.26.2.13 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 44 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 02 2017 07:31:48 NMEA Latitude = 49 35.85 N NMEA Longitude = 124 51.59 W NMEA UTC (Time) = Jul 02 2017 14:29:34 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 5 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Vector: 2017-56 Station: BS5 Depth: 42 System UTC = Jul 02 2017 14:31:48 # nquan = 20 # nvalues = 3249 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = depSM: Depth [salt water, m] # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = t190C: Temperature, 2 [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = c1S/m: Conductivity, 2 [S/m] # name 7 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 8 = flSP: Fluorescence, Seapoint # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = spar: SPAR/Surface Irradiance # name 12 = ph: pH # name 13 = altM: Altimeter [m] # name 14 = dz/dtM: Descent Rate [m/s] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 19 = flag: flag # span 0 = 1, 3249 # span 1 = 1.545, 35.123 # span 2 = 1.532, 34.820 # span 3 = 10.1810, 17.7968 # span 4 = 10.1665, 17.9739 # span 5 = 3.158700, 3.364217 # span 6 = 3.158250, 3.371096 # span 7 = 63.3755, 85.1992 # span 8 = 3.1746e-01, 1.2686e+01 # span 9 = 1.3871, 2.6142 # span 10 = 4.5605e-02, 2.8168e+02 # span 11 = 5.3640e+02, 5.4434e+02 # span 12 = 8.431, 9.050 # span 13 = 0.00, 100.00 # span 14 = -0.768, 0.781 # span 15 = 0, 1 # span 16 = 24.6729, 28.3060 # span 17 = 24.6493, 28.2996 # span 18 = 3.1559, 7.0295 # span 19 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 02 2017 14:32:02 [NMEA time, first data scan] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.8000e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # # # 0691 # 15-Jan-15 # 4.6262 # 2.5140 # # # # # # 4565 QSP200L4S # 16-Mar-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # # # 20518 # 21-MAR-2016 # 1627.06600000 # 1.00000000 # # # # datcnv_date = Dec 04 2017 16:19:00, 7.23.2 [datcnv_vars = 16] # datcnv_in = P:\Cruise_Data_Processing\2017-56\RAW\CTD\2017-56-0054.hex P:\Crui se_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Dec 05 2017 13:53:17, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2017-56\Processing\convert\2017-56-005 4.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM depSM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 05 2017 13:54:43, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-56\Processing\wildedit\2017-56-00 54.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Dec 05 2017 13:56:56, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-56\Processing\align\2017-56-0054.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 05 2017 13:58:39, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2017-56\Processing\celltm\2017-56-0054.c nv P:\Cruise_Data_Processing\2017-56\Processing\doc\2017-56-ctd.XMLCON # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records near the surface and records corrupted by shed wakes near the bottom of the cast. Oxygen:Dissolved points were remove from the surface to 5.6db. -------------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence:URU:Seapoint, pH:SBE, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. oxygen:Dissolved:SBE data are calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit is allowed. Recalibration was based on the results of cruise 2017-06 during which many samples were collected in areas where Niskin bottles are believed to flush well. There were sporadic problems with the primary plumbing that are severe near the surface. The secondary temperature and salinity channels were selected for archiving, but there is no alternative for the CTD dissolved oxygen channel. Profiles of DO sometimes make it obvious where there are problems. A further assessment was made by examining salinity profiles to identify the depth at which the two salinity channels are close enough that the dissolved oxygen sensor data are likely to be reliable. CTDEDIT was used to remove DO data with quality likely to be poor, but all the data should be considered of lower quality than usual. No estimate of DO accuracy has been made due to the many uncertainties in the comparison with bottles. For details on the processing see document: 2017-56_Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.32E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.645E-01 1.0399) $END !--1--- --2--- ---3---- --4-- ---5--- --6--- --7--- ---8--- ---9---- --10-- --11- -12- !Pressu Depth Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Numb !re ure: missi cence: Refere Nominal :T1:C1 : n: er_o ! Secondar vity URU: nce Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- ---- *END OF HEADER 3.0 3.0 16.7348 28.3 3.672 169.0 542.5 9.037 25.2742 -99.00 -99.0 38 4.0 4.0 16.8066 29.7 3.658 115.6 542.4 9.040 25.2495 -99.00 -99.0 37 5.0 5.0 16.7665 29.5 3.509 79.2 542.4 9.045 25.2713 -99.00 -99.0 35 6.0 6.0 16.2157 29.3 4.145 55.4 542.4 9.047 25.4787 7.00 306.6 30 7.0 6.9 14.7850 26.8 4.899 39.6 542.4 9.044 26.0109 7.15 313.3 31 8.0 7.9 14.3649 23.2 6.026 28.5 542.4 9.033 26.1661 6.99 306.1 32 9.0 8.9 14.0913 19.1 6.371 20.2 542.4 9.000 26.2768 6.62 289.7 31 10.0 9.9 13.1689 16.6 8.821 14.0 541.8 8.965 26.6477 6.05 265.0 31 11.0 10.9 12.8221 16.6 10.380 9.2 542.4 8.908 26.7929 5.60 245.0 32 12.0 11.9 12.1729 17.7 8.824 6.0 542.3 8.853 27.1449 5.21 228.1 26 13.0 12.9 11.8232 25.4 6.754 3.9 542.3 8.800 27.3353 4.91 214.8 31 14.0 13.9 11.5537 32.3 4.073 2.6 542.4 8.755 27.5273 4.74 207.1 32 15.0 14.9 11.4206 39.7 2.601 1.9 542.4 8.718 27.6078 4.61 201.4 32 16.0 15.9 11.1924 42.5 2.021 1.4 542.4 8.680 27.7294 4.47 195.3 32 17.0 16.9 11.0416 45.6 1.368 1.2 541.2 8.644 27.8143 4.24 185.5 32 18.0 17.9 10.8552 45.1 1.061 0.9 540.4 8.609 27.9130 4.00 174.9 33 19.0 18.8 10.7915 45.7 0.904 0.8 540.4 8.587 27.9481 3.93 171.7 32 20.0 19.8 10.7761 46.2 0.799 0.7 540.4 8.565 27.9719 4.11 179.5 32 21.0 20.8 10.7623 48.1 0.746 0.5 540.4 8.553 28.0349 4.29 187.7 33 22.0 21.8 10.6840 50.3 0.645 0.5 540.4 8.551 28.0816 4.33 189.2 28 23.0 22.8 10.6686 51.0 0.579 0.4 540.4 8.554 28.0991 4.33 189.2 33 24.0 23.8 10.6326 51.1 0.542 0.3 540.4 8.557 28.1368 4.32 188.8 33 25.0 24.8 10.5981 52.0 0.565 0.3 540.4 8.557 28.1565 4.29 187.3 33 26.0 25.8 10.5499 52.3 0.541 0.2 540.2 8.557 28.1739 4.25 185.6 33 27.0 26.8 10.5460 52.0 0.575 0.2 539.6 8.553 28.1794 4.22 184.6 33 28.0 27.8 10.5208 52.5 0.498 0.2 539.9 8.547 28.1905 4.17 182.4 32 29.0 28.7 10.4789 51.1 0.512 0.1 540.1 8.543 28.2107 4.15 181.3 34 30.0 29.7 10.4952 50.2 0.471 0.1 539.6 8.541 28.2214 4.18 182.6 34 31.0 30.7 10.4767 51.5 0.447 0.1 538.5 8.539 28.2306 4.14 181.1 36 32.0 31.7 10.4090 51.8 0.418 0.1 538.4 8.536 28.2479 3.98 173.8 41 33.0 32.7 10.2601 50.7 0.400 0.1 538.4 8.530 28.2750 3.64 159.2 49 34.0 33.7 10.2005 49.2 0.357 0.1 538.4 8.519 28.2783 3.40 148.6 54 34.6 34.3 10.1801 48.3 0.518 0.1 538.4 8.501 28.2839 3.36 146.6 13