*2018/04/05 13:23:18.81 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/09/18 15:09:56.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 40 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 2C70970B NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 0.831 39.886 2 Depth metres 0.824 39.543 3 Temperature:Primary 'deg C (ITS90)' 11.3158 13.9888 4 Fluorescence:URU:Wetlabs mg/m^3 0.42E-01 1.256 5 pH:SBE:Nominal n/a 8.405 8.749 6 Salinity:T0:C0 PSS-78 28.0825 29.437 7 Oxygen:Dissolved:SBE mL/L 2.56 4.51 8 Oxygen:Dissolved:SBE umol/kg 111.8 197.2 9 Number_of_bin_records n/a 3 16 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-53\Processing\derive\2017-53-0088.cnv $END *ADMINISTRATION MISSION : 2017-53 AGENCY : PBS, Ecosystem Sciences Division, Nanaimo, B.C. COUNTRY : Canada PROJECT : Strait of Georgia Juvenile Salmon SCIENTIST : Neville C. PLATFORM : Sea Crest *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SET 52 EVENT NUMBER : 88 LATITUDE : 48 53.99600 N ! (deg min) LONGITUDE : 123 37.13000 W ! (deg min) WATER DEPTH : 171 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE25plus SERIAL NUMBER : 404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0464 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS Software Version 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.2 2018/04/03 14:40:58 1114 1114 CLEAN 5.2.2 2018/04/03 16:22:41 1114 1114 MERGEHDR 1.3 2018/04/03 16:22:50 1114 1114 CLIP 1.3 2018/04/03 16:56:33 1114 415 SHIFTDAT 3.4 2018/04/04 10:00:25 415 415 DELETE 6.3 2018/04/04 10:01:35 415 364 CTDEDIT 5.2.3 2018/04/04 12:24:32 364 356 FILTERS 4.3 2018/04/04 14:05:31 356 356 CALIB 11.9 2018/04/04 16:56:08 356 356 BINAVE 4.2 2018/04/04 16:57:57 356 40 REMOVECH 8.2 2018/04/04 16:58:00 40 40 CHGUNITS 3.1.1 2018/04/04 16:58:11 40 40 ADTIMCH 4.4 2018/04/05 09:42:30 40 40 REORDER 1.3.1 2018/04/05 09:42:35 ? ? HDREDIT2 3.1.1 2018/04/05 13:23:18 ? ? $END $REMARKS -CLEAN functions: 2018/04/03 16:22:37 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure:StrainGauge Set event to last 4 characters of file name Set header Start and End times from the data. *FAILED* -The following CLIP parameters were used. Clip by Record Number Limits First Record,Last Record = 700, 50000 Time Not Available in File -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 15.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 9 points) will be deleted. Drop rate applies in the range 10.00 to 32.97 dbars Sample interval (from FILE section of header) = 0.125 seconds. -CTDEDIT v5.2.3 2018/04/04 12:24:32 8 records were deleted in this editing session. 70 changes in channel Salinity:T0:C0 -The following FILTER parameters were used. Median filter was used. Filter width = 5 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -CALIB parameters: 2018/04/04 16:56:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-recal1.CCF Calibration limited to records where Fluorescence:URU:Wetlabs:ECO-AFL between: -5 and 0 0 records, in 0 block, were within the limits. 356 records were outside the limits. Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 6 Fluorescence:URU:Wetlabs:ECO- mg/m^3 10 0.0000000E+00 0.0000000E+00 -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2018/04/04 16:58:00 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -The following ADTIMCH parameters were used. Add 7.00 hours to times in header file section -HEADER EDITS: 2018/04/05 13:23:18 Applied edit header: P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-HDR.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 4: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 5: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Users\WaterProperties-16\Desktop\2017-53\000013.hex Software Version 1.59 Temperature SN = 2449 Conductivity SN = 1764 System UpLoad Time = Jul 25 2017 15:07:26 2017-53 SOG2017-06 ds SBE 25 CTD V 4.1c SN 0404 09/21/17 19:51:59.064 external pressure sensor, range = 10153 psia, tcval = 37 xtal = 9437232 clk = 32768.052 vmain = 13.6 iop = 195 vlith = 5.1 ncasts = 24 samples = 51630 free = 593343 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 13 09/18 08:09:56 smpls 44200 to 45313 nv = 3 avg = 1 stp = batfai S> # nquan = 12 # nvalues = 1114 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = depSM: Depth [salt water, m], lat = 49.00 # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = ph: pH # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = sal00: Salinity, Practical [PSU] # name 10 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 11 = flag: flag # span 0 = 1, 1114 # span 1 = 0.066, 42.972 # span 2 = 0.065, 42.603 # span 3 = 11.1367, 14.0189 # span 4 = 0.075819, 3.444130 # span 5 = -0.3120, 18.7674 # span 6 = 0.0000, 1.8547 # span 7 = 5.006, 8.753 # span 8 = -0.170, 1.643 # span 9 = 0.4839, 29.8420 # span 10 = -2.2858, 14.8146 # span 11 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Sep 18 2017 08:09:56 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2449 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35536976e-003 # 6.43861843e-004 # 2.35988525e-005 # 2.27425418e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 23-Feb-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15782044e+000 # 4.88269411e-001 # -7.82043110e-004 # 6.18774318e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0464 # 28-Feb-17 # 7.973872e+002 # -2.072374e-001 # 2.547327e-007 # 0.00000 # # # # # # 0852 # 08-Mar-17 # 4.5991 # 2.5690 # # # # # # 1176 # 02-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.1597e-001 # -0.5257 # -4.5701e-003 # 2.1508e-004 # -3.4602e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 07-Mar-2017 # 1.30000000e+001 # # 0.0240 # # # # datcnv_date = Apr 03 2018 09:08:19, 7.23.2 [datcnv_vars = 9] # datcnv_in = P:\Cruise_Data_Processing\2017-53\RAW\CTD\2017-53-0088.hex P:\Crui se_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Apr 03 2018 14:38:09, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2017-53\Processing\convert\2017-53-0088 .cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 5 # wfilter_action depSM = cosine, 5 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Apr 03 2018 14:38:25, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-53\Processing\wfilter\2017-53-008 8.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Apr 03 2018 14:38:48, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-53\Processing\align\2017-53-0088.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Apr 03 2018 14:39:06, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2017-53\Processing\celltm\2017-53-0088.c nv P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove a few records from near the top of the cast; salinity was cleaned. Data Processing Notes: ---------------------- Dissolved Oxygen and pH:SBE data are nominal and unedited, except that some records were removed in editing temperature and salinity. Channel Fluorescence:URU:Wetlabs was removed from casts #2-41 & #49-54 because the protective cap had not been removed. The data that remain are nominal. Some small negative values in fluorescence were set to 0 using program Calibrate. The raw files from events #93 to #141 contained only surface data and were not processed. The data from event #190 were lost. There was no calibration sampling available from this cruise. An inter-ship comparison of 2 casts from cruise 2017-52 with a cast from a cruise that did include calibration sampling, suggested that the salinity values from this CTD were accurate but that dissolved oxygen values were likely low by up to 4%. The length of the surface soaks varied greatly, with many being long enough for the pumps to come on and equilibration of pumped channels to be achieved. For some the soak was too short for equilibration to occur before the CTD had started the downcast. For details on the processing see processing report: 2017-53-Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------------------- -------- ---- ------ ------------ Fluorescence:URU:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0 0) $END !--1--- --2--- ---3---- ---4--- ---5--- ---6---- --7--- --8-- -9-- !Pressu Depth Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ ------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 0.8 0.8 13.9888 1.251 8.749 28.0825 3.63 158.7 8 1.9 1.9 13.9165 1.256 8.743 28.1546 4.12 180.2 13 3.0 3.0 13.9142 1.214 8.742 28.1593 4.38 191.6 16 3.9 3.9 13.8790 1.255 8.730 28.1804 4.50 197.0 15 5.0 4.9 13.7135 1.237 8.696 28.2877 4.51 197.2 10 6.0 6.0 13.5315 1.102 8.658 28.3975 4.40 192.2 11 7.0 7.0 13.2644 0.793 8.635 28.5046 4.27 186.8 11 8.0 8.0 13.1372 0.489 8.611 28.5234 4.08 178.6 10 9.0 8.9 12.9065 0.414 8.594 28.5694 3.88 169.5 12 10.0 9.9 12.7508 0.351 8.585 28.5639 3.66 159.9 10 11.0 10.9 12.6947 0.277 8.578 28.5562 3.51 153.2 11 12.0 11.9 12.6589 0.266 8.577 28.5728 3.42 149.7 10 13.0 12.9 12.5650 0.230 8.574 28.6620 3.37 147.3 10 14.0 13.9 12.5129 0.193 8.576 28.7017 3.32 145.1 10 15.0 14.9 12.5049 0.210 8.598 28.7108 3.29 143.6 9 16.0 15.9 12.5842 0.221 8.607 28.7344 3.25 142.2 9 17.0 16.9 12.5751 0.347 8.607 28.8371 3.27 142.7 9 18.0 17.9 12.5361 0.432 8.606 28.8750 3.31 144.7 9 19.0 18.9 12.5169 0.431 8.608 28.8880 3.35 146.3 9 20.0 19.9 12.5169 0.424 8.607 28.8901 3.35 146.6 9 21.0 20.8 12.4997 0.480 8.610 28.9091 3.35 146.5 9 22.0 21.8 12.4753 0.438 8.597 28.9280 3.34 145.9 9 23.0 22.8 12.3815 0.471 8.590 28.9944 3.33 145.6 9 24.0 23.8 12.3494 0.402 8.589 29.0012 3.33 145.4 9 25.0 24.8 12.3464 0.393 8.588 28.9996 3.29 143.9 9 26.0 25.8 12.3421 0.351 8.580 29.0096 3.29 143.9 9 27.0 26.8 12.2871 0.321 8.572 29.0453 3.28 143.3 7 28.0 27.8 12.2145 0.334 8.563 29.0855 3.25 141.8 6 29.0 28.7 12.2649 0.277 8.549 29.1078 3.20 140.0 8 30.1 29.8 12.2464 0.223 8.527 29.2491 3.14 137.2 7 31.0 30.7 12.0420 0.128 8.512 29.3600 3.06 133.5 7 32.0 31.7 11.7818 0.090 8.490 29.3793 2.97 129.7 7 33.0 32.7 11.6854 0.112 8.469 29.3742 2.91 126.9 6 34.0 33.7 11.4938 0.112 8.457 29.3718 2.85 124.4 7 35.0 34.7 11.3954 0.145 8.448 29.3412 2.78 121.3 5 36.0 35.7 11.3458 0.104 8.440 29.3464 2.70 117.9 9 37.0 36.6 11.3158 0.071 8.431 29.4101 2.65 115.8 7 38.0 37.6 11.4427 0.090 8.419 29.4224 2.60 113.7 6 39.0 38.7 11.5124 0.101 8.409 29.4370 2.56 111.8 5 39.9 39.5 11.5879 0.042 8.405 29.4368 -99.00 -99.0 3