*2018/04/05 13:23:18.78 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/09/18 01:43:53.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 79 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 33302798 NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 1.218 79.045 2 Depth metres 1.208 78.36 3 Temperature:Primary 'deg C (ITS90)' 11.4861 14.2503 4 Fluorescence:URU:Wetlabs mg/m^3 0.136 1.782 5 pH:SBE:Nominal n/a 8.49 8.801 6 Salinity:T0:C0 PSS-78 28.3127 29.8268 7 Oxygen:Dissolved:SBE mL/L 2.626 4.396 8 Oxygen:Dissolved:SBE umol/kg 114.7 192.2 9 Number_of_bin_records n/a 7 16 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-53\Processing\derive\2017-53-0085.cnv $END *ADMINISTRATION MISSION : 2017-53 AGENCY : PBS, Ecosystem Sciences Division, Nanaimo, B.C. COUNTRY : Canada PROJECT : Strait of Georgia Juvenile Salmon SCIENTIST : Neville C. PLATFORM : Sea Crest *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SET 51 EVENT NUMBER : 85 LATITUDE : 48 48.77400 N ! (deg min) LONGITUDE : 123 35.57700 W ! (deg min) WATER DEPTH : 90 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE25plus SERIAL NUMBER : 404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0464 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS Software Version 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.2 2018/04/03 14:40:58 2233 2233 CLEAN 5.2.2 2018/04/03 16:22:41 2233 2233 MERGEHDR 1.3 2018/04/03 16:22:50 2233 2233 CLIP 1.3 2018/04/03 16:56:17 2233 1284 SHIFTDAT 3.4 2018/04/04 10:00:24 1284 1284 DELETE 6.3 2018/04/04 10:01:34 1284 657 CTDEDIT 5.2.3 2018/04/04 12:20:07 657 643 FILTERS 4.3 2018/04/04 14:05:31 643 643 CALIB 11.9 2018/04/04 16:56:08 643 643 BINAVE 4.2 2018/04/04 16:57:57 643 79 REMOVECH 8.2 2018/04/04 16:58:00 79 79 CHGUNITS 3.1.1 2018/04/04 16:58:11 79 79 ADTIMCH 4.4 2018/04/05 09:42:30 79 79 REORDER 1.3.1 2018/04/05 09:42:35 ? ? HDREDIT2 3.1.1 2018/04/05 13:23:18 ? ? $END $REMARKS -CLEAN functions: 2018/04/03 16:22:37 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure:StrainGauge Set event to last 4 characters of file name Set header Start and End times from the data. *FAILED* -The following CLIP parameters were used. Clip by Record Number Limits First Record,Last Record = 950, 50000 Time Not Available in File -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 15.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 9 points) will be deleted. Drop rate applies in the range 10.00 to 69.96 dbars Sample interval (from FILE section of header) = 0.125 seconds. -CTDEDIT v5.2.3 2018/04/04 12:20:07 14 records were deleted in this editing session. 186 changes in channel Salinity:T0:C0 -The following FILTER parameters were used. Median filter was used. Filter width = 5 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -CALIB parameters: 2018/04/04 16:56:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-recal1.CCF Calibration limited to records where Fluorescence:URU:Wetlabs:ECO-AFL between: -5 and 0 0 records, in 0 block, were within the limits. 643 records were outside the limits. Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 6 Fluorescence:URU:Wetlabs:ECO- mg/m^3 10 0.0000000E+00 0.0000000E+00 -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2018/04/04 16:58:00 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -The following ADTIMCH parameters were used. Add 7.00 hours to times in header file section -HEADER EDITS: 2018/04/05 13:23:18 Applied edit header: P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-HDR.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 4: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 5: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Users\WaterProperties-16\Desktop\2017-53\000012.hex Software Version 1.59 Temperature SN = 2449 Conductivity SN = 1764 System UpLoad Time = Jul 25 2017 15:06:01 2017-53 SOG2017-06 ds SBE 25 CTD V 4.1c SN 0404 09/21/17 19:51:59.064 external pressure sensor, range = 10153 psia, tcval = 37 xtal = 9437232 clk = 32768.052 vmain = 13.6 iop = 195 vlith = 5.1 ncasts = 24 samples = 51630 free = 593343 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 12 09/17 18:43:53 smpls 41967 to 44199 nv = 3 avg = 1 stp = batfai S> # nquan = 12 # nvalues = 2233 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = depSM: Depth [salt water, m], lat = 49.00 # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = ph: pH # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = sal00: Salinity, Practical [PSU] # name 10 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 11 = flag: flag # span 0 = 1, 2233 # span 1 = 0.773, 79.957 # span 2 = 0.767, 79.264 # span 3 = 11.4853, 14.3258 # span 4 = 3.390522, 3.487822 # span 5 = -0.3120, 18.8785 # span 6 = 0.0000, 1.8779 # span 7 = 8.480, 8.812 # span 8 = -1.209, 1.265 # span 9 = 28.1192, 29.9066 # span 10 = -1.8927, 14.8145 # span 11 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Sep 17 2017 18:43:53 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2449 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35536976e-003 # 6.43861843e-004 # 2.35988525e-005 # 2.27425418e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 23-Feb-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15782044e+000 # 4.88269411e-001 # -7.82043110e-004 # 6.18774318e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0464 # 28-Feb-17 # 7.973872e+002 # -2.072374e-001 # 2.547327e-007 # 0.00000 # # # # # # 0852 # 08-Mar-17 # 4.5991 # 2.5690 # # # # # # 1176 # 02-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.1597e-001 # -0.5257 # -4.5701e-003 # 2.1508e-004 # -3.4602e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 07-Mar-2017 # 1.30000000e+001 # # 0.0240 # # # # datcnv_date = Apr 03 2018 09:08:18, 7.23.2 [datcnv_vars = 9] # datcnv_in = P:\Cruise_Data_Processing\2017-53\RAW\CTD\2017-53-0085.hex P:\Crui se_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Apr 03 2018 14:38:09, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2017-53\Processing\convert\2017-53-0085 .cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 5 # wfilter_action depSM = cosine, 5 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Apr 03 2018 14:38:25, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-53\Processing\wfilter\2017-53-008 5.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Apr 03 2018 14:38:48, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-53\Processing\align\2017-53-0085.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Apr 03 2018 14:39:06, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2017-53\Processing\celltm\2017-53-0085.c nv P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove a few records from near the bottom of the cast; salinity was cleaned. Data Processing Notes: ---------------------- Dissolved Oxygen and pH:SBE data are nominal and unedited, except that some records were removed in editing temperature and salinity. Channel Fluorescence:URU:Wetlabs was removed from casts #2-41 & #49-54 because the protective cap had not been removed. The data that remain are nominal. Some small negative values in fluorescence were set to 0 using program Calibrate. The raw files from events #93 to #141 contained only surface data and were not processed. The data from event #190 were lost. There was no calibration sampling available from this cruise. An inter-ship comparison of 2 casts from cruise 2017-52 with a cast from a cruise that did include calibration sampling, suggested that the salinity values from this CTD were accurate but that dissolved oxygen values were likely low by up to 4%. The length of the surface soaks varied greatly, with many being long enough for the pumps to come on and equilibration of pumped channels to be achieved. For some the soak was too short for equilibration to occur before the CTD had started the downcast. For details on the processing see processing report: 2017-53-Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------------------- -------- ---- ------ ------------ Fluorescence:URU:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0 0) $END !--1--- --2--- ---3---- ---4--- ---5--- ---6---- --7--- --8-- -9-- !Pressu Depth Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ ------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 1.2 1.2 14.2458 1.591 8.801 28.3127 3.24 141.8 8 2.0 2.0 14.2503 1.685 8.800 28.3138 3.83 167.5 16 2.9 2.9 14.2472 1.782 8.798 28.3181 4.13 180.6 12 4.0 4.0 14.2277 1.651 8.788 28.3276 4.33 189.5 10 5.0 4.9 14.1724 1.728 8.770 28.3533 4.40 192.2 8 6.0 5.9 13.9997 1.696 8.750 28.4255 4.39 191.9 8 7.0 6.9 13.9264 1.630 8.693 28.4420 4.33 189.4 8 8.0 7.9 13.4414 1.464 8.662 28.6921 4.23 184.8 8 9.0 8.9 13.1305 1.039 8.651 28.8249 4.05 177.0 8 10.0 9.9 13.0588 0.525 8.647 28.8738 3.85 168.2 7 11.0 10.9 13.0355 0.448 8.646 28.8834 3.70 161.8 8 12.0 11.9 13.0211 0.425 8.646 28.8888 3.60 157.3 7 13.0 12.9 12.9894 0.388 8.641 28.9028 3.52 153.9 8 14.0 13.9 12.9149 0.391 8.637 28.9503 3.48 152.1 7 15.0 14.8 12.8446 0.386 8.628 28.9983 3.44 150.5 8 16.0 15.9 12.7318 0.356 8.617 29.0950 3.41 149.1 8 17.0 16.9 12.6109 0.346 8.606 29.2038 3.39 147.9 7 18.0 17.9 12.4932 0.325 8.601 29.2875 3.34 146.0 8 19.0 18.9 12.4132 0.287 8.596 29.3364 3.29 143.9 7 20.0 19.9 12.3863 0.235 8.594 29.3438 3.25 142.2 7 21.0 20.8 12.3540 0.222 8.601 29.3620 3.21 140.4 8 22.0 21.8 12.3385 0.237 8.607 29.3709 3.19 139.1 7 23.0 22.8 12.3498 0.291 8.603 29.3886 3.17 138.4 7 24.0 23.8 12.3229 0.331 8.599 29.4225 3.17 138.6 8 25.0 24.8 12.2926 0.327 8.602 29.4316 3.17 138.7 8 26.0 25.8 12.2897 0.302 8.606 29.4276 3.18 138.9 7 27.0 26.8 12.2914 0.307 8.608 29.4363 3.18 139.1 8 28.0 27.8 12.2727 0.347 8.606 29.4577 3.18 139.1 9 29.1 28.8 12.2544 0.376 8.604 29.4785 3.18 139.0 8 30.1 29.8 12.2364 0.362 8.603 29.4808 3.18 139.0 8 31.0 30.8 12.2218 0.364 8.600 29.4867 3.18 139.0 7 32.0 31.7 12.2112 0.364 8.585 29.4882 3.17 138.6 9 33.0 32.7 12.1258 0.406 8.577 29.5096 3.16 138.1 8 34.0 33.7 12.0519 0.281 8.581 29.5040 3.15 137.6 8 35.0 34.7 12.0855 0.255 8.582 29.4896 3.11 135.8 8 36.0 35.7 12.0827 0.268 8.582 29.4924 3.09 134.9 7 36.9 36.6 12.0819 0.284 8.568 29.4990 3.09 135.0 7 38.0 37.7 12.0461 0.268 8.547 29.5192 3.08 134.7 8 39.0 38.7 11.8878 0.237 8.530 29.5429 3.06 133.5 7 40.0 39.6 11.7589 0.188 8.523 29.5329 3.00 131.0 8 41.0 40.7 11.7195 0.185 8.509 29.5155 2.94 128.2 7 42.0 41.6 11.6612 0.159 8.499 29.5207 2.88 125.8 7 43.0 42.6 11.5670 0.146 8.495 29.5170 2.83 123.7 8 44.0 43.7 11.5394 0.138 8.494 29.5067 2.77 121.1 8 45.0 44.7 11.5029 0.141 8.495 29.5079 2.72 118.9 7 46.0 45.6 11.5012 0.150 8.495 29.5024 2.69 117.4 7 46.9 46.5 11.5106 0.140 8.494 29.5172 2.67 116.5 8 48.0 47.6 11.4914 0.166 8.493 29.5289 2.66 116.1 8 49.0 48.6 11.4928 0.156 8.491 29.5249 2.65 115.9 8 50.0 49.6 11.4909 0.180 8.491 29.5242 2.64 115.4 8 51.0 50.5 11.4891 0.136 8.490 29.5239 2.63 115.0 8 52.0 51.5 11.4880 0.166 8.490 29.5231 2.63 114.8 7 53.0 52.5 11.4862 0.137 8.490 29.5285 2.63 114.7 8 54.0 53.5 11.4877 0.144 8.490 29.5369 2.63 115.0 7 54.9 54.5 11.4861 0.157 8.490 29.5406 2.63 114.9 7 55.9 55.5 11.4912 0.139 8.496 29.5403 2.63 114.8 7 57.0 56.5 11.5002 0.156 8.519 29.5442 2.63 115.0 8 58.0 57.5 11.5904 0.139 8.537 29.5518 2.64 115.2 7 59.0 58.5 11.7136 0.203 8.544 29.6012 2.65 115.6 7 60.0 59.5 11.7558 0.235 8.549 29.6437 2.68 117.1 7 61.0 60.5 11.7684 0.287 8.552 29.6623 2.72 118.7 8 62.0 61.5 11.7906 0.261 8.551 29.6715 2.74 119.6 10 63.0 62.5 11.7632 0.277 8.557 29.7083 2.76 120.3 8 64.0 63.4 11.7698 0.261 8.559 29.7094 2.79 121.7 10 65.0 64.4 11.7799 0.282 8.555 29.7392 2.80 122.2 9 66.0 65.4 11.7467 0.277 8.554 29.7719 2.84 123.9 8 67.0 66.4 11.7494 0.291 8.549 29.7638 2.85 124.4 9 68.0 67.4 11.7110 0.237 8.548 29.7852 2.85 124.4 9 68.9 68.3 11.7166 0.252 8.545 29.7667 2.85 124.5 9 70.0 69.4 11.7014 0.261 8.533 29.7761 2.85 124.3 9 71.0 70.4 11.6285 0.245 8.526 29.7824 2.85 124.6 9 72.0 71.3 11.5877 0.201 8.525 29.7848 2.86 124.9 9 73.0 72.4 11.5846 0.183 8.523 29.7825 2.83 123.4 10 74.0 73.3 11.5833 0.176 8.524 29.7807 2.79 121.8 8 75.0 74.3 11.5814 0.201 8.530 29.7860 2.77 121.1 9 76.0 75.3 11.5965 0.196 8.542 29.7920 2.75 120.1 8 77.0 76.3 11.6616 0.225 8.548 29.7980 2.74 119.4 10 78.0 77.4 11.6794 0.239 8.550 29.8118 2.73 119.2 9 79.0 78.4 11.6784 0.291 8.550 29.8268 2.70 117.9 10