*2018/04/05 13:23:18.62 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/09/17 02:29:20.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 49 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 108B9B5 NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 1.295 48.748 2 Depth metres 1.284 48.329 3 Temperature:Primary 'deg C (ITS90)' 10.2664 11.7582 4 Fluorescence:URU:Wetlabs mg/m^3 0.323 0.767 5 pH:SBE:Nominal n/a 8.515 8.598 6 Salinity:T0:C0 PSS-78 29.8444 31.2554 7 Oxygen:Dissolved:SBE mL/L 2.818 3.641 8 Oxygen:Dissolved:SBE umol/kg 122.9 158.9 9 Number_of_bin_records n/a 5 14 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-53\Processing\derive\2017-53-0067.cnv $END *ADMINISTRATION MISSION : 2017-53 AGENCY : PBS, Ecosystem Sciences Division, Nanaimo, B.C. COUNTRY : Canada PROJECT : Strait of Georgia Juvenile Salmon SCIENTIST : Neville C. PLATFORM : Sea Crest *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SET 41 EVENT NUMBER : 67 LATITUDE : 48 29.51100 N ! (deg min) LONGITUDE : 123 16.26900 W ! (deg min) WATER DEPTH : 56 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE25plus SERIAL NUMBER : 404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2449 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0464 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS Software Version 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 4.2.2 2018/04/03 14:40:57 2220 2220 CLEAN 5.2.2 2018/04/03 16:22:40 2220 2220 MERGEHDR 1.3 2018/04/03 16:22:49 2220 2220 CLIP 1.3 2018/04/03 16:55:59 2220 1121 SHIFTDAT 3.4 2018/04/04 10:00:24 1121 1121 DELETE 6.3 2018/04/04 10:01:34 1121 449 CTDEDIT 5.2.3 2018/04/04 11:36:08 449 434 FILTERS 4.3 2018/04/04 14:05:31 434 434 CALIB 11.9 2018/04/04 16:56:08 434 434 BINAVE 4.2 2018/04/04 16:57:57 434 49 REMOVECH 8.2 2018/04/04 16:58:00 49 49 CHGUNITS 3.1.1 2018/04/04 16:58:10 49 49 ADTIMCH 4.4 2018/04/05 09:42:30 49 49 REORDER 1.3.1 2018/04/05 09:42:34 ? ? HDREDIT2 3.1.1 2018/04/05 13:23:18 ? ? $END $REMARKS -CLEAN functions: 2018/04/03 16:22:37 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure:StrainGauge Set event to last 4 characters of file name Set header Start and End times from the data. *FAILED* -The following CLIP parameters were used. Clip by Record Number Limits First Record,Last Record = 1100, 50000 Time Not Available in File -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 15.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 9 points) will be deleted. Drop rate applies in the range 10.00 to 39.21 dbars Sample interval (from FILE section of header) = 0.125 seconds. -CTDEDIT v5.2.3 2018/04/04 11:36:08 15 records were deleted in this editing session. 18 changes in channel Salinity:T0:C0 -The following FILTER parameters were used. Median filter was used. Filter width = 5 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -CALIB parameters: 2018/04/04 16:56:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-recal1.CCF Calibration limited to records where Fluorescence:URU:Wetlabs:ECO-AFL between: -5 and 0 0 records, in 0 block, were within the limits. 434 records were outside the limits. Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 6 Fluorescence:URU:Wetlabs:ECO- mg/m^3 10 0.0000000E+00 0.0000000E+00 -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2018/04/04 16:58:00 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -The following ADTIMCH parameters were used. Add 7.00 hours to times in header file section -HEADER EDITS: 2018/04/05 13:23:18 Applied edit header: P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-HDR.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Channel 4: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 5: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Users\WaterProperties-16\Desktop\2017-53\000008.hex Software Version 1.59 Temperature SN = 2449 Conductivity SN = 1764 System UpLoad Time = Jul 25 2017 14:59:53 2017-53 SOG2017-06 ds SBE 25 CTD V 4.1c SN 0404 09/21/17 19:51:59.064 external pressure sensor, range = 10153 psia, tcval = 37 xtal = 9437232 clk = 32768.052 vmain = 13.6 iop = 195 vlith = 5.1 ncasts = 24 samples = 51630 free = 593343 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 8 09/16 19:29:20 smpls 31837 to 34056 nv = 3 avg = 1 stp = switch of S> # nquan = 12 # nvalues = 2220 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = depSM: Depth [salt water, m], lat = 49.00 # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = ph: pH # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = sal00: Salinity, Practical [PSU] # name 10 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 11 = flag: flag # span 0 = 1, 2220 # span 1 = 0.085, 49.206 # span 2 = 0.084, 48.782 # span 3 = 10.2618, 15.4009 # span 4 = 0.085944, 3.552104 # span 5 = -0.3120, 18.8467 # span 6 = 0.0000, 1.6288 # span 7 = 8.146, 8.644 # span 8 = -1.001, 1.227 # span 9 = 0.5344, 31.3710 # span 10 = -2.2672, 13.9412 # span 11 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Sep 16 2017 19:29:20 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2449 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35536976e-003 # 6.43861843e-004 # 2.35988525e-005 # 2.27425418e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 23-Feb-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15782044e+000 # 4.88269411e-001 # -7.82043110e-004 # 6.18774318e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0464 # 28-Feb-17 # 7.973872e+002 # -2.072374e-001 # 2.547327e-007 # 0.00000 # # # # # # 0852 # 08-Mar-17 # 4.5991 # 2.5690 # # # # # # 1176 # 02-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.1597e-001 # -0.5257 # -4.5701e-003 # 2.1508e-004 # -3.4602e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 07-Mar-2017 # 1.30000000e+001 # # 0.0240 # # # # datcnv_date = Apr 03 2018 09:08:15, 7.23.2 [datcnv_vars = 9] # datcnv_in = P:\Cruise_Data_Processing\2017-53\RAW\CTD\2017-53-0067.hex P:\Crui se_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Apr 03 2018 14:38:08, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2017-53\Processing\convert\2017-53-0067 .cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 5 # wfilter_action depSM = cosine, 5 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Apr 03 2018 14:38:24, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-53\Processing\wfilter\2017-53-006 7.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Apr 03 2018 14:38:47, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-53\Processing\align\2017-53-0067.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Apr 03 2018 14:39:05, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2017-53\Processing\celltm\2017-53-0067.c nv P:\Cruise_Data_Processing\2017-53\Processing\doc\2017-53-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove a few records from near the top and bottom of the cast; salinity was cleaned. Data Processing Notes: ---------------------- Dissolved Oxygen and pH:SBE data are nominal and unedited, except that some records were removed in editing temperature and salinity. Channel Fluorescence:URU:Wetlabs was removed from casts #2-41 & #49-54 because the protective cap had not been removed. The data that remain are nominal. Some small negative values in fluorescence were set to 0 using program Calibrate. The raw files from events #93 to #141 contained only surface data and were not processed. The data from event #190 were lost. There was no calibration sampling available from this cruise. An inter-ship comparison of 2 casts from cruise 2017-52 with a cast from a cruise that did include calibration sampling, suggested that the salinity values from this CTD were accurate but that dissolved oxygen values were likely low by up to 4%. The length of the surface soaks varied greatly, with many being long enough for the pumps to come on and equilibration of pumped channels to be achieved. For some the soak was too short for equilibration to occur before the CTD had started the downcast. For details on the processing see processing report: 2017-53-Processing_Report.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------------------- -------- ---- ------ ------------ Fluorescence:URU:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0 0) $END !--1--- --2--- ---3---- ---4--- ---5--- ---6---- --7--- --8-- -9-- !Pressu Depth Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ ------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 1.3 1.3 11.7582 0.671 8.598 29.8444 3.64 158.9 13 1.9 1.8 11.7126 0.711 8.596 29.8774 3.60 157.4 13 3.0 3.0 11.6752 0.691 8.593 29.9020 3.60 157.1 14 4.0 4.0 11.5719 0.767 8.591 29.9729 3.58 156.5 13 5.0 5.0 11.5010 0.711 8.589 30.0222 3.57 155.7 12 6.0 6.0 11.4867 0.681 8.589 30.0350 3.54 154.3 13 7.0 7.0 11.4793 0.645 8.588 30.0433 3.52 153.6 11 8.0 7.9 11.4831 0.638 8.587 30.0417 3.53 153.9 11 9.0 8.9 11.4889 0.625 8.587 30.0417 3.53 154.1 10 10.0 9.9 11.4832 0.613 8.585 30.0433 3.53 153.9 11 11.0 10.9 11.4743 0.642 8.584 30.0619 3.51 153.1 11 12.0 11.9 11.4587 0.655 8.584 30.0809 3.49 152.2 10 13.0 12.9 11.4511 0.717 8.581 30.0915 3.48 152.1 11 14.0 13.9 11.3766 0.629 8.575 30.1659 3.47 151.3 10 15.0 14.8 11.2186 0.672 8.572 30.2702 3.44 150.0 11 16.0 15.9 11.1707 0.655 8.570 30.2970 3.40 148.4 10 17.0 16.9 11.1159 0.631 8.568 30.3276 3.38 147.3 9 18.0 17.9 11.0770 0.627 8.568 30.3485 3.35 146.3 7 19.0 18.8 11.0559 0.628 8.567 30.3603 3.33 145.5 8 20.0 19.8 11.0312 0.613 8.567 30.3696 3.34 145.8 8 21.0 20.8 11.0247 0.646 8.565 30.3700 3.34 145.7 8 22.0 21.8 11.0245 0.659 8.564 30.3701 3.33 145.1 7 23.0 22.8 11.0176 0.645 8.564 30.3731 3.33 145.1 7 24.0 23.8 11.0103 0.607 8.564 30.3755 3.32 144.9 8 25.0 24.8 10.9969 0.584 8.564 30.3755 3.31 144.2 7 26.0 25.8 10.9919 0.593 8.563 30.3719 3.30 143.9 7 27.0 26.7 10.9628 0.651 8.556 30.4007 3.29 143.5 7 28.0 27.8 10.8621 0.628 8.553 30.5318 3.27 142.4 8 29.1 28.8 10.8071 0.616 8.547 30.6107 3.23 140.9 7 30.0 29.8 10.7325 0.552 8.543 30.6917 3.20 139.7 7 31.0 30.7 10.6762 0.498 8.542 30.7706 3.18 138.7 8 32.0 31.8 10.6360 0.499 8.539 30.8162 3.15 137.3 8 33.1 32.8 10.6125 0.420 8.538 30.8488 3.12 136.1 8 34.0 33.8 10.6046 0.418 8.537 30.8577 3.10 135.4 7 35.0 34.7 10.5993 0.402 8.537 30.8626 3.09 134.7 7 36.0 35.7 10.5931 0.470 8.537 30.8669 3.07 134.1 8 37.1 36.7 10.5792 0.468 8.538 30.8784 3.07 133.8 8 38.0 37.7 10.5562 0.439 8.537 30.9002 3.06 133.3 7 39.0 38.6 10.5388 0.438 8.537 30.9216 3.05 133.0 7 39.9 39.6 10.5258 0.454 8.534 30.9377 3.04 132.5 8 41.0 40.7 10.5057 0.466 8.530 30.9601 3.03 132.0 8 42.0 41.7 10.4291 0.416 8.526 31.0438 3.00 131.0 8 43.0 42.6 10.3728 0.388 8.524 31.1171 2.98 130.0 8 44.0 43.6 10.3467 0.374 8.520 31.1490 2.95 128.6 8 45.0 44.7 10.2903 0.408 8.520 31.2157 2.91 127.0 8 46.0 45.6 10.2872 0.363 8.518 31.2299 2.90 126.3 9 47.0 46.6 10.2738 0.323 8.517 31.2435 2.88 125.6 8 48.0 47.6 10.2664 0.332 8.516 31.2543 2.86 124.7 7 48.7 48.3 10.2665 0.329 8.515 31.2554 2.82 122.9 5