*2018/01/24 10:08:32.94 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/08/25 14:38:08.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 3 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : B0DE36E6 NUMBER OF CHANNELS : 19 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 3 2 Bottle:Firing_Sequence n/a 1 3 3 Pressure decibar 3.568 10.863 4 Depth metres 3.537 10.769 5 Temperature:Primary 'deg C (ITS90)' 13.2805 13.2807 6 Transmissivity %/metre 45.5 45.7 7 Fluorescence:URU:Seapoint mg/m^3 3.076 3.138 8 PAR uE/m^2/sec 1.969 7.074 9 Salinity:T0:C0 PSS-78 32.3538 32.3541 10 Oxygen:Dissolved:SBE mL/L 6.116 6.127 11 Oxygen:Dissolved:SBE umol/kg 266.6 267 12 Number_of_bin_records n/a 241 241 13 Sample_Number n/a 666 668 14 Temperature:Draw 'deg C (ITS90)' 13.4 13.5 15 Salinity:Bottle PSS-78 32.3609 32.3611 16 Flag:Salinity:Bottle ' ' 17 Oxygen:Dissolved mL/L 6.179 6.188 18 Oxygen:Dissolved umol/kg 269.3 269.7 19 Flag:Oxygen:Dissolved ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 ' ' ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 6 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 8 F R4 3 18 -99 ' ' 6 F ' ' 1 19 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2017-08 AGENCY : IOS, Ocean Sciences Division, Sidney, BC COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : PA-011 EVENT NUMBER : 91 LATITUDE : 50 8.11000 N ! (deg min) LONGITUDE : 144 49.86000 W ! (deg min) WATER DEPTH : 4251 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 PAR/Irradiance:Biospherical/Licor ' ' 70613 Altimeter ' ' 62355 'Transmissometer:WET Labs C-Star' ' ' 1396DR $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.7.107 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/12/12 09:47:04 723 723 CLEAN 5.2.2 2017/12/12 09:49:05 723 723 ADDSAMP 3.6 2017/12/12 09:58:44 723 723 BINAVE 4.2 2017/12/12 09:58:55 723 3 MERGE 3.5 2017/12/14 11:01:05 3 3 CLEAN 5.2.2 2017/12/14 11:01:09 3 3 ADTIMCH 4.4 2018/01/04 13:37:42 3 3 CALIB 11.9 2018/01/04 13:37:55 3 3 SORT 3.6 2018/01/04 16:14:10 3 3 REMOVECH 8.2 2018/01/23 09:07:59 3 3 CHGUNITS 3.1.1 2018/01/23 09:08:08 3 3 CHGUNITS 3.1.1 2018/01/23 09:08:11 3 3 REORDER 1.3.1 2018/01/23 09:08:18 ? ? ADTIMCH 4.4 2018/01/23 09:08:24 3 3 HDREDIT2 3.1.1 2018/01/24 10:08:32 ? ? $END $REMARKS -CLEAN functions: 2017/12/12 09:48:50 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2017-08\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number [n/a] -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2017/12/14 11:01:05 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2017-08\Processing\hydro\2017-08-0091.samavg Secondary file: P:\Cruise_Data_Processing\2017-08\Processing\hydro\2017-08-0091.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2017-08\Processing\hydro\2017-08-0091.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2017/12/14 10:52:10 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2017/12/14 11:01:07 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Delete Empty Channels: 0 deleted. -The following ADTIMCH parameters were used. Add Day-Of-Year Add 7.00 hours to times in header file section -CALIB parameters: 2018/01/04 13:37:55 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-08\Processing\doc\2017-08-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 12 Fluorescence:URU:Seapoint mg/m^3 11 0.1502000E+01 -0.6800000E-02 0.0000000E+00 0.0000000E+00 0.0000000E+00 0.0000000E+00 Time:Day_Of_Year 19 Salinity:T1:C1 PSS-78 10 -0.6000000E-03 0.1000000E+01 20 Oxygen:Dissolved:SBE mL/L 10 0.5330000E-01 0.1051400E+01 -SORT parameters: 2018/01/04 16:14:10 Sorted in ascending order of channel Pressure* -REMOVECH 2018/01/23 09:07:59 The following CHANNEL(S) were removed: Time:Day_Of_Year [DAY_OF_YEAR] Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Altimeter [metres] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -The following ADTIMCH parameters were used. Add -7.00 hours to times in header file section -HEADER EDITS: 2018/01/24 10:08:32 Applied edit header: P:\Cruise_Data_Processing\2017-08\Processing\doc\HYDRO\2017-08-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 8: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F11.3 ==> F7.2 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 15: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 17: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 4: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-08\2017-08-0091.hex Software Version Seasave V 7.26.7.107 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Aug 25 2017 14:42:07 NMEA Latitude = 50 08.11 N NMEA Longitude = 144 49.86 W NMEA UTC (Time) = Aug 25 2017 14:38:08 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Tully: 2017-08 Station: PA-011 Depth: 4251 System UTC = Aug 25 2017 14:42:07 # nquan = 20 # nvalues = 723 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = depSM: Depth [salt water, m] # name 5 = t090C: Temperature [ITS-90, deg C] # name 6 = t190C: Temperature, 2 [ITS-90, deg C] # name 7 = c0S/m: Conductivity [S/m] # name 8 = c1S/m: Conductivity, 2 [S/m] # name 9 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 10 = flSP: Fluorescence, Seapoint # name 11 = sbeox0V: Oxygen raw, SBE 43 [V] # name 12 = par: PAR/Irradiance, Biospherical/Licor # name 13 = dz/dtM: Descent Rate [m/s] # name 14 = altM: Altimeter [m] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 19 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Aug 25 2017 14:38:08 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.7500e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460000 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # datcnv_date = Dec 12 2017 09:44:06, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2017-08\RAW\CTD\2017-08-0091.hex P:\Crui se_Data_Processing\2017-08\Processing\doc\2017-08-ctd.xmlcon # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 up to ~6 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.02-12.28ug/l. Average %CV for this cruise was 3.36% with 3 out of 69 duplicate pairs having a CV>10% and 0 out of 69 duplicate pairs having a CV>30%. Our average dataset %CV is 2.84% for 2013 - 2016 so the overall quality of this dataset is very good. For details see worksheet “CV%” in file QF2017-08CHL*.xls. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2017-08OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 14 - 28 days after collection. For details including a duplicate analysis, see document QF2017-08SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2017-08nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100 deg C (with a dewar containing boiling water) onto a Choromasorb 330 column which eluted onto a Flame Photometric Detector (FPD). All samples were run as soon as possible after being collected. For more detail see file "2017-08DMS report.doc" and for data and duplicate analysis see "DMS summary (2017-08).xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.1nmol/L. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. The fluorometer values drifted during the cruise starting with slightly high dark values early in the cruise and rising to about 0.20 ug/L by the end. A time-dependent correction was applied based on values at 4000m with an adjustment to ensure no negative values were produced. This is an estimate and produces dark values at 2000m ranging from 0.02ug/L to 0.09ug/L. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2017-08_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! --------------------------- -------- ---- ------ ------------ Fluorescence:URU:Seapoint mg/m^3 11 -99 (Time:Day_Of_Year) (1.502 -0.68E-02 0 0 0 0) Salinity:T1:C1 PSS-78 10 -99 () (-0.6E-03 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.533E-01 1.0514) $END !1- 2- --3--- --4--- ---5---- --6-- ---7--- --8--- ---9---- --10-- --11- -12- -13- --14- ---15--- 16 ---17-- --18- 19 !Bo Bo Pressu Depth Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Oxygen: Oxyge Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ ratur :Bottle ag Dissolv n: ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb e: ~o ed Disso ~o !mb en Seapoin ved: lved: _rec er Draw tt lved lv !er ce t SBE SBE ords le ed !-- -- ------ ------ -------- ----- ------- ------ -------- ------ ----- ---- ---- ----- -------- -- ------- ----- -- *END OF HEADER 3 3 3.6 3.5 13.2806 45.7 3.076 7.1 32.3538 6.13 267.0 241 668 13.5 32.3609 0 6.187 269.7 6 2 2 6.5 6.4 13.2805 45.6 3.138 4.1 32.3541 6.12 266.6 241 667 13.5 32.3611 0 6.179 269.3 6 1 1 10.9 10.8 13.2807 45.5 3.116 2.0 32.3538 6.12 266.6 241 666 13.4 32.3611 0 6.188 269.7 6