*2017/08/28 10:54:37.53 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/05/30 17:58:25.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 53 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 77CC9A1E NUMBER OF CHANNELS : 10 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 3.442 54.544 2 Depth metres 3.411 54.069 3 Temperature:Secondary 'deg C (ITS90)' 8.0835 10.5931 4 Transmissivity %/metre 38.1 61.6 5 Fluorescence:URU:Seapoint mg/m^3 0.184 4.545 6 PAR uE/m^2/sec 0 161.807 7 Salinity:T1:C1 PSS-78 30.2263 32.4391 8 Oxygen:Dissolved:SBE mL/L 5.106 7.074 9 Oxygen:Dissolved:SBE umol/kg 222.3323 308.6551 10 Number_of_bin_records n/a 4 61 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-05\Pro $END *ADMINISTRATION MISSION : 2017-05 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse Zooplankton Oceanography SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : CS06 EVENT NUMBER : 118 LATITUDE : 51 0.09000 N ! (deg min) LONGITUDE : 128 51.98000 W ! (deg min) WATER DEPTH : 63 ALTIMETER (M) : 9.57 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1201DR PAR/Irradiance:Biospherical/Licor ' ' 70613 Altimeter ' ' 62355 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.1.8 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/08/15 14:03:26 12872 12872 CLEAN 5.2.2 2017/08/15 14:17:18 12872 12872 SHIFTDAT 3.4 2017/08/16 11:11:12 12872 12872 SHIFTDAT 3.4 2017/08/16 12:10:20 12872 12872 SHIFTDAT 3.4 2017/08/16 14:16:26 12872 12872 DELETE 6.3 2017/08/16 14:23:22 12872 1705 CTDEDIT 5.2.3 2017/08/24 15:59:10 1705 1444 CALIB 11.9 2017/08/25 16:10:40 1444 1444 FILTERS 4.3 2017/08/25 17:07:58 1444 1444 BINAVE 4.2 2017/08/25 17:12:23 1444 53 REMOVECH 8.2 2017/08/25 17:15:21 53 53 CHGUNITS 3.1.1 2017/08/28 09:21:47 53 53 REORDER 1.3.1 2017/08/28 09:22:04 ? ? HDREDIT2 3.1.1 2017/08/28 10:54:37 ? ? $END $REMARKS -CLEAN functions: 2017/08/15 14:09:35 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Insert Pad Values in Channel: Transmissivity [%/metre] where channel Pressure [decibar] is in the range 400.1 to 10000 1316382 data records in pad range. Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 44.70 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2017/08/24 15:59:10 261 records were deleted in this editing session. 1 change in channel Temperature:Secondary 6 changes in channel Salinity:T1:C1 -CALIB parameters: 2017/08/25 16:10:40 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Salinity:T1:C1 PSS-78 10 -0.5400000E-02 0.1000000E+01 17 Oxygen:Dissolved:SBE mL/L 10 0.5270000E-01 0.1044800E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/08/25 17:15:21 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temp* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2017/08/28 10:54:37 Applied edit header: P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F8.3 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-05\2017-05-0118.hex Software Version Seasave V 7.26.1.8 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = May 30 2017 18:01:18 NMEA Latitude = 51 00.09 N NMEA Longitude = 128 51.98 W NMEA UTC (Time) = May 30 2017 17:58:25 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2017-05 Ship: J.P. Tully Station: CS06 Depth: 63 System UTC = May 30 2017 18:01:18 # nquan = 18 # nvalues = 12872 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = depSM: Depth [salt water, m] # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = t190C: Temperature, 2 [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = c1S/m: Conductivity, 2 [S/m] # name 7 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 8 = flSP: Fluorescence, Seapoint # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = altM: Altimeter [m] # name 12 = dz/dtM: Descent Rate [m/s] # name 13 = pumps: Pump Status # name 14 = sal00: Salinity, Practical [PSU] # name 15 = sal11: Salinity, Practical, 2 [PSU] # name 16 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 17 = flag: flag # span 0 = 1, 12872 # span 1 = 1.402, 54.697 # span 2 = 1.390, 54.216 # span 3 = 8.0822, 10.9796 # span 4 = 8.0818, 11.0104 # span 5 = 3.345147, 3.399065 # span 6 = 3.345609, 3.400219 # span 7 = 78.0225, 88.6723 # span 8 = 1.5873e-01, 8.6935e+00 # span 9 = 1.7887, 2.4469 # span 10 = 1.0000e-12, 4.1102e+02 # span 11 = 8.82, 61.54 # span 12 = -0.989, 1.171 # span 13 = 0, 1 # span 14 = 30.0106, 32.4421 # span 15 = 30.0039, 32.4490 # span 16 = 4.8276, 6.9350 # span 17 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = May 30 2017 17:58:25 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 1201DR # 15 April 2016 # 19.2119 # -0.1153 # 0.250 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460000 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # datcnv_date = Aug 15 2017 09:34:37, 7.23.2 [datcnv_vars = 14] # datcnv_in = P:\Cruise_Data_Processing\2017-05\RAW\CTD\2017-05-0118.hex P:\Crui se_Data_Processing\2017-05\Processing\doc\2017-05-ctd2.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Aug 15 2017 09:45:07, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2017-05\Processing\convert\2017-05-011 8.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM depSM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Aug 15 2017 11:23:07, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-05\Processing\wildedit\2017-05-01 18.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Aug 15 2017 11:28:38, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-05\Processing\align\2017-05-0118.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Aug 15 2017 11:34:28, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2017-05\Processing\celltm\2017-05-0118.c nv P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-ctd2.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. Transmissivity data are nominal. All values below 400m were removed because the sensor malfunctioned at depth. Above 400m the data are of lower quality than usual due to undersampling. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.5 mL/L from 0 to 75db ±0.3 mL/L from 75db to 200db ±0.08 mL/L from 200db to 400db ±0.04 mL/L from 400db to 2000db For details on the processing see document: 2017-05_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.54E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.527E-01 1.0448) $END !--1--- --2--- ---3---- --4-- ---5--- --6--- ---7--- --8--- --9-- -10- !Pressu Depth Temperat Trans Fluores PAR Salinit Oxygen Oxyge Numb !re ure: missi cence: y:T1:C1 : n: er_o ! Secondar vity URU: Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ ------ -------- ----- ------- ------ ------- ------ ----- ---- *END OF HEADER 3.4 3.4 10.5895 46.3 1.648 161.8 30.227 7.07 308.6 4 4.0 4.0 10.5931 45.8 1.738 143.6 30.226 7.07 308.6 29 4.7 4.6 10.5440 45.6 1.880 120.7 30.254 7.07 308.7 9 6.1 6.1 10.4806 43.4 2.126 81.2 30.296 7.02 306.2 23 7.0 6.9 10.2865 45.1 2.158 65.6 30.397 6.94 302.6 30 8.0 7.9 10.1307 48.0 2.397 51.6 30.472 6.85 298.9 33 9.0 8.9 10.0428 49.0 2.138 41.1 30.517 6.78 295.6 31 10.0 9.9 9.9227 50.1 1.799 32.9 30.579 6.69 291.8 27 11.0 10.9 9.8265 51.1 1.830 26.3 30.628 6.59 287.6 26 12.0 11.9 9.5393 51.2 1.653 21.4 30.783 6.51 283.8 24 13.0 12.9 9.3846 52.9 1.676 17.9 30.882 6.42 280.1 22 14.0 13.9 9.2586 53.3 1.761 15.1 30.946 6.37 277.6 22 15.0 14.9 9.1394 51.5 1.776 12.7 31.039 6.32 275.4 22 16.0 15.9 9.0728 53.0 2.050 10.6 31.148 6.28 273.7 20 17.0 16.8 9.0701 51.1 2.518 9.0 31.226 6.25 272.2 21 18.0 17.8 9.0699 47.9 2.954 7.6 31.273 6.21 270.9 23 19.0 18.8 9.0780 44.3 3.922 6.3 31.333 6.18 269.2 22 20.0 19.8 9.0891 40.6 4.068 5.1 31.384 6.15 267.9 27 21.0 20.8 9.0602 40.0 4.158 4.2 31.398 6.13 267.0 25 22.0 21.8 9.0561 39.6 4.395 3.4 31.412 6.11 266.1 25 23.0 22.8 9.0631 39.5 4.545 2.7 31.439 6.08 264.8 24 24.0 23.8 9.0502 38.1 4.531 2.2 31.467 6.04 263.5 24 25.0 24.8 9.0221 38.1 4.467 1.7 31.503 6.01 261.8 24 26.0 25.8 9.0105 39.1 4.321 1.3 31.521 5.98 260.5 22 27.0 26.7 8.9931 40.7 3.932 1.1 31.542 5.94 259.0 22 28.0 27.8 8.9682 42.1 3.755 0.8 31.562 5.91 257.5 22 29.0 28.7 8.9406 41.1 3.800 0.7 31.584 5.88 256.3 21 30.0 29.7 8.9121 41.9 3.953 0.5 31.605 5.85 254.8 22 31.0 30.7 8.8835 41.3 3.765 0.4 31.628 5.81 253.3 21 32.0 31.7 8.8527 42.3 3.743 0.3 31.656 5.78 251.6 22 33.0 32.7 8.8246 43.6 3.329 0.3 31.681 5.74 250.0 23 34.0 33.7 8.8046 42.6 3.318 0.2 31.700 5.69 248.0 23 35.0 34.7 8.7678 43.5 3.251 0.2 31.731 5.64 245.7 24 36.0 35.7 8.6301 41.0 2.781 0.1 31.848 5.59 243.4 25 37.0 36.7 8.5243 47.4 2.379 0.1 31.947 5.54 241.2 25 38.0 37.7 8.4713 49.3 2.216 0.1 31.995 5.50 239.6 24 39.0 38.7 8.4128 50.7 1.965 0.1 32.048 5.48 238.5 22 40.0 39.7 8.3901 52.0 2.087 0.0 32.080 5.45 237.3 21 41.0 40.6 8.3776 52.3 1.893 0.0 32.107 5.41 235.7 20 42.0 41.6 8.3554 52.1 1.801 0.0 32.142 5.37 233.8 22 43.0 42.6 8.2854 53.0 1.328 0.0 32.224 5.31 231.1 22 44.0 43.6 8.1597 54.7 0.846 0.0 32.355 5.25 228.7 22 45.0 44.7 8.0941 59.3 0.515 0.0 32.420 5.21 226.7 29 46.0 45.6 8.0900 61.0 0.355 0.0 32.427 5.17 225.2 44 47.0 46.6 8.0859 61.5 0.250 0.0 32.432 5.14 224.0 56 48.0 47.6 8.0854 61.4 0.223 0.0 32.434 5.13 223.4 52 49.0 48.6 8.0838 61.6 0.209 0.0 32.435 5.12 223.1 45 50.0 49.6 8.0835 61.3 0.198 0.0 32.435 5.12 223.0 46 51.0 50.6 8.0843 61.5 0.301 0.0 32.436 5.12 223.1 49 52.0 51.6 8.0844 61.3 0.214 0.0 32.436 5.12 223.0 54 53.0 52.5 8.0840 61.3 0.200 0.0 32.437 5.12 222.9 61 53.9 53.4 8.0841 61.6 0.203 0.0 32.438 5.11 222.6 25 54.5 54.1 8.0845 61.6 0.184 0.0 32.439 5.11 222.3 12