*2017/08/28 10:54:33.24 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/05/27 01:49:19.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 55 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 8AB135CE NUMBER OF CHANNELS : 10 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 1.478 54.531 2 Depth metres 1.464 54.087 3 Temperature:Secondary 'deg C (ITS90)' 9.1003 12.6187 4 Transmissivity %/metre 24.9 63.1 5 Fluorescence:URU:Seapoint mg/m^3 0.109 16.911 6 PAR uE/m^2/sec 0.16E-01 158.595 7 Salinity:T1:C1 PSS-78 30.6802 32.8628 8 Oxygen:Dissolved:SBE mL/L 4.463 7.594 9 Oxygen:Dissolved:SBE umol/kg 194.3001 331.2971 10 Number_of_bin_records n/a 4 79 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2017-05\Pro $END *ADMINISTRATION MISSION : 2017-05 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse Zooplankton Oceanography SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : LC05/B5 EVENT NUMBER : 53 LATITUDE : 48 39.93000 N ! (deg min) LONGITUDE : 125 47.35000 W ! (deg min) WATER DEPTH : 63 ALTIMETER (M) : 9.77 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4484 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3685 'Transmissometer:WET Labs C-Star' ' ' 1201DR PAR/Irradiance:Biospherical/Licor ' ' 70613 Altimeter ' ' 62355 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.1.8 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/08/15 13:58:19 4340 4340 CLEAN 5.2.2 2017/08/15 14:12:35 4340 4340 SHIFTDAT 3.4 2017/08/16 11:06:40 4340 4340 SHIFTDAT 3.4 2017/08/16 12:05:50 4340 4340 SHIFTDAT 3.4 2017/08/16 14:12:00 4340 4340 DELETE 6.3 2017/08/16 14:20:07 4340 1649 CTDEDIT 5.2.3 2017/08/22 15:17:49 1649 1594 CALIB 11.9 2017/08/25 16:08:46 1594 1594 FILTERS 4.3 2017/08/25 17:06:04 1594 1594 BINAVE 4.2 2017/08/25 17:11:29 1594 55 REMOVECH 8.2 2017/08/25 17:15:16 55 55 CHGUNITS 3.1.1 2017/08/28 09:21:42 55 55 REORDER 1.3.1 2017/08/28 09:21:59 ? ? HDREDIT2 3.1.1 2017/08/28 10:54:33 ? ? $END $REMARKS -CLEAN functions: 2017/08/15 14:09:35 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Insert Pad Values in Channel: Transmissivity [%/metre] where channel Pressure [decibar] is in the range 400.1 to 10000 402931 data records in pad range. Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 44.67 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2017/08/22 15:17:49 55 records were deleted in this editing session. 54 changes in channel Salinity:T1:C1 -CALIB parameters: 2017/08/25 16:08:46 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Salinity:T1:C1 PSS-78 10 -0.5400000E-02 0.1000000E+01 17 Oxygen:Dissolved:SBE mL/L 10 0.5270000E-01 0.1044800E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/08/25 17:15:16 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temp* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2017/08/28 10:54:33 Applied edit header: P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 2: Depth [metres] Name: Depth:Salt_Water ==> Depth Format: F10.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Salinity:T1:C1 [PSS-78] Format: F11.4 ==> F8.3 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-05\2017-05-0053.hex Software Version Seasave V 7.26.1.8 Temperature SN = 4054 Conductivity SN = 1766 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = May 27 2017 01:52:14 NMEA Latitude = 48 39.93 N NMEA Longitude = 125 47.35 W NMEA UTC (Time) = May 27 2017 01:49:19 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2017-05 Ship: J.P. Tully Station: LC05/B5 Depth: 63 System UTC = May 27 2017 01:52:14 # nquan = 18 # nvalues = 4340 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = depSM: Depth [salt water, m] # name 3 = t090C: Temperature [ITS-90, deg C] # name 4 = t190C: Temperature, 2 [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = c1S/m: Conductivity, 2 [S/m] # name 7 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 8 = flSP: Fluorescence, Seapoint # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = altM: Altimeter [m] # name 12 = dz/dtM: Descent Rate [m/s] # name 13 = pumps: Pump Status # name 14 = sal00: Salinity, Practical [PSU] # name 15 = sal11: Salinity, Practical, 2 [PSU] # name 16 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 17 = flag: flag # span 0 = 1, 4340 # span 1 = 1.429, 54.671 # span 2 = 1.417, 54.202 # span 3 = 9.1038, 12.6278 # span 4 = 9.0874, 12.6408 # span 5 = 3.447248, 3.607767 # span 6 = 3.445325, 3.609436 # span 7 = 70.0938, 89.1649 # span 8 = 9.7680e-02, 2.5812e+01 # span 9 = 1.6348, 2.5885 # span 10 = 8.8306e-03, 1.7778e+02 # span 11 = 9.06, 61.68 # span 12 = -1.227, 1.447 # span 13 = 0, 1 # span 14 = 30.6372, 32.8630 # span 15 = 30.6589, 32.8786 # span 16 = 4.1223, 7.2307 # span 17 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = May 27 2017 01:49:19 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4054 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616406e-003 # 6.44028261e-004 # 2.29631886e-005 # 2.07487665e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12892961e+000 # 4.88377974e-001 # -6.29237468e-004 # 5.38259078e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 24-Feb-17 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99995690 # 0.08882 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4484 # 22-Feb-17 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39937667e-003 # 6.40472023e-004 # 2.15385278e-005 # 1.84322868e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 30-Mar-17 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02129539e+001 # 1.56309188e+000 # -2.40628351e-003 # 2.66312047e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 28-Mar-17 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7570e-001 # -0.5165 # -3.9454e-003 # 1.7154e-004 # -2.7543e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.0300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3685 # 13-Mar-17 # # 2 # 0.000 # # # # # # 1201DR # 15 April 2016 # 19.2119 # -0.1153 # 0.250 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460000 # # # # # # # # # 62355 # # 15.000 # 0.000 # # # # # # # datcnv_date = Aug 15 2017 09:32:23, 7.23.2 [datcnv_vars = 14] # datcnv_in = P:\Cruise_Data_Processing\2017-05\RAW\CTD\2017-05-0053.hex P:\Crui se_Data_Processing\2017-05\Processing\doc\2017-05-ctd2.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Aug 15 2017 09:43:12, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2017-05\Processing\convert\2017-05-005 3.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM depSM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Aug 15 2017 11:21:07, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2017-05\Processing\wildedit\2017-05-00 53.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Aug 15 2017 11:26:40, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2017-05\Processing\align\2017-05-0053.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Aug 15 2017 11:32:09, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2017-05\Processing\celltm\2017-05-0053.c nv P:\Cruise_Data_Processing\2017-05\Processing\doc\2017-05-ctd2.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. Transmissivity data are nominal. All values below 400m were removed because the sensor malfunctioned at depth. Above 400m the data are of lower quality than usual due to undersampling. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.5 mL/L from 0 to 75db ±0.3 mL/L from 75db to 200db ±0.08 mL/L from 200db to 400db ±0.04 mL/L from 400db to 2000db For details on the processing see document: 2017-05_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T1:C1 PSS-78 10 -99 () (-0.54E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.527E-01 1.0448) $END !--1--- --2--- ---3---- --4-- ---5--- --6--- ---7--- --8--- --9-- -10- !Pressu Depth Temperat Trans Fluores PAR Salinit Oxygen Oxyge Numb !re ure: missi cence: y:T1:C1 : n: er_o ! Secondar vity URU: Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ ------ -------- ----- ------- ------ ------- ------ ----- ---- *END OF HEADER 1.5 1.5 12.6187 30.1 3.048 158.6 30.680 7.46 325.3 6 1.9 1.9 12.6080 30.3 3.152 120.3 30.682 7.46 325.5 79 3.0 3.0 12.5273 30.0 4.030 81.4 30.685 7.50 327.0 44 4.0 3.9 12.4193 30.3 4.461 60.0 30.686 7.52 328.0 61 5.1 5.0 12.2026 29.6 5.776 45.8 30.691 7.53 328.5 47 6.0 6.0 11.9357 29.9 5.938 35.7 30.693 7.58 330.5 61 7.1 7.0 11.7050 29.9 6.222 25.1 30.699 7.59 331.3 51 8.0 7.9 11.4985 29.6 8.021 19.2 30.710 7.55 329.5 42 9.0 8.9 11.4456 28.9 15.385 15.4 30.715 7.47 326.1 33 10.0 9.9 11.3411 26.1 16.911 12.3 30.730 7.38 321.8 34 11.0 10.9 11.1526 24.9 12.698 8.9 30.769 7.21 314.4 32 12.0 11.9 11.0466 27.9 10.296 6.2 30.810 7.04 307.0 32 13.0 12.9 10.9363 32.4 10.122 4.3 30.843 6.89 300.4 33 14.0 13.9 10.7903 36.2 8.983 3.3 30.877 6.75 294.2 33 15.0 14.8 10.5933 35.9 7.221 2.7 30.931 6.61 288.4 27 16.0 15.8 10.4939 40.3 5.552 2.3 30.976 6.51 283.8 20 17.0 16.9 10.4643 43.9 5.746 1.9 31.033 6.42 280.0 19 18.0 17.9 10.4246 42.4 4.949 1.7 31.134 6.34 276.4 19 19.0 18.9 10.4005 46.4 3.940 1.4 31.226 6.27 273.2 22 20.0 19.8 10.3944 48.8 2.934 1.2 31.370 6.17 268.9 26 21.0 20.8 10.2339 52.2 2.064 1.0 31.574 6.05 263.5 30 22.0 21.8 10.0806 55.6 1.559 0.8 31.646 5.90 257.2 30 23.0 22.8 9.9357 57.2 1.152 0.8 31.679 5.75 250.5 30 24.0 23.8 9.8019 58.2 0.916 0.7 31.741 5.57 242.9 29 25.0 24.8 9.4989 59.4 0.575 0.6 31.794 5.41 235.6 25 26.0 25.8 9.4360 60.9 0.348 0.6 31.945 5.31 231.2 20 27.0 26.8 9.4693 61.9 0.289 0.5 31.998 5.26 229.4 19 28.0 27.8 9.4993 61.9 0.229 0.5 32.045 5.24 228.4 19 29.0 28.8 9.5259 60.9 0.189 0.4 32.106 5.22 227.6 20 30.0 29.8 9.5446 60.1 0.155 0.4 32.160 5.21 226.8 23 31.0 30.7 9.5685 61.6 0.130 0.4 32.215 5.19 226.0 28 32.0 31.7 9.5851 62.5 0.121 0.3 32.265 5.17 225.4 30 33.0 32.7 9.5905 62.7 0.121 0.3 32.281 5.17 225.0 31 34.0 33.7 9.5968 62.8 0.112 0.2 32.300 5.17 225.1 29 35.0 34.7 9.6074 62.8 0.116 0.2 32.321 5.19 225.9 24 36.0 35.7 9.6310 62.9 0.123 0.2 32.351 5.20 226.6 20 37.0 36.7 9.6218 63.1 0.109 0.2 32.362 5.22 227.3 19 38.0 37.7 9.6173 63.0 0.115 0.2 32.399 5.23 227.8 17 39.0 38.7 9.6170 63.1 0.118 0.2 32.425 5.24 228.2 20 40.0 39.7 9.6084 63.1 0.112 0.1 32.440 5.23 227.7 24 41.0 40.7 9.5984 63.0 0.128 0.1 32.444 5.20 226.3 33 42.0 41.6 9.5941 62.8 0.118 0.1 32.450 5.16 224.6 36 43.0 42.6 9.5874 62.9 0.117 0.1 32.455 5.13 223.3 24 44.0 43.6 9.5808 62.6 0.118 0.1 32.466 5.12 222.8 17 45.0 44.6 9.5705 62.2 0.133 0.1 32.484 5.12 223.0 15 46.0 45.6 9.5708 59.0 0.123 0.1 32.491 5.13 223.5 18 47.0 46.6 9.5703 59.9 0.133 0.1 32.496 5.14 223.9 22 48.0 47.6 9.5681 61.0 0.122 0.0 32.500 5.14 223.9 33 49.0 48.6 9.5663 60.9 0.123 0.0 32.502 5.11 222.7 36 50.0 49.6 9.5274 60.9 0.124 0.0 32.531 5.00 217.9 29 51.0 50.5 9.3625 60.7 0.130 0.0 32.657 4.81 209.6 30 52.0 51.5 9.2455 60.2 0.132 0.0 32.747 4.66 202.7 30 53.0 52.5 9.1711 59.6 0.149 0.0 32.808 4.54 197.7 24 54.0 53.6 9.1166 58.6 0.153 0.0 32.851 4.47 194.8 27 54.5 54.1 9.1003 58.1 0.192 0.0 32.863 4.46 194.3 4