*2021/12/06 13:23:13.30 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2017/02/19 11:30:59.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 12 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 881C3B2E NUMBER OF CHANNELS : 58 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 616 627 2 Bottle_Number n/a 1 12 3 Bottle:Firing_Sequence n/a 1 12 4 Pressure decibar 0.7 181.9 5 Temperature:Primary 'deg C (ITS90)' 7.6479 8.6082 6 Fluorescence:URU:Seapoint mg/m^3 0.162 0.991 7 PAR uE/m^2/sec 0 0.1 8 Salinity:T0:C0 PSS-78 29.6122 33.0825 9 Oxygen:Dissolved:SBE mL/L 3.92 6.56 10 Oxygen:Dissolved:SBE umol/kg 170.7 286.3 11 Number_of_bin_records n/a 241 241 12 Temperature:Draw 'deg C (ITS90)' 7.7 8.7 13 Salinity:Bottle PSS-78 30.7043 30.7043 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 3.942 6.479 16 Oxygen:Dissolved umol/kg 171.6 282.7 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 16.19 24.21 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 31.38 40.98 21 Flag:Silicate n/a 22 Phosphate umol/L 1.353 1.975 23 Flag:Phosphate n/a 24 Chlorophyll:Extracted mg/m^3 0.51 0.97 25 Flag:Chlorophyll:Extracted n/a 26 Phaeo-Pigment:Extracted mg/m^3 0.12 0.47 27 Depth metres 0.7 180.3 28 HPLC:Chl-c3 mg/m^3 0.21E-01 0.21E-01 29 HPLC:Chlide-a mg/m^3 0 0 30 HPLC:MgDVP mg/m^3 0.14E-01 0.14E-01 31 HPLC:Chl-c2 mg/m^3 0.78E-01 0.78E-01 32 HPLC:Chl-c1 mg/m^3 0 0 33 HPLC:Me-chlide mg/m^3 0 0 34 HPLC:Peri mg/m^3 0.42E-01 0.42E-01 35 HPLC:Pheide-a mg/m^3 0 0 36 HPLC:But-fuco mg/m^3 0.1E-01 0.1E-01 37 HPLC:Fuco mg/m^3 0.213 0.213 38 HPLC:Neo mg/m^3 0.15E-01 0.15E-01 39 HPLC:Pras mg/m^3 0.34E-01 0.34E-01 40 HPLC:Viola mg/m^3 0.2E-01 0.2E-01 41 HPLC:Hex-fuco mg/m^3 0.16E-01 0.16E-01 42 HPLC:Diadino mg/m^3 0.34E-01 0.34E-01 43 HPLC:Allo mg/m^3 0.82E-01 0.82E-01 44 HPLC:Diato mg/m^3 0 0 45 HPLC:Zea mg/m^3 0.2E-02 0.2E-02 46 HPLC:Lut mg/m^3 0.2E-02 0.2E-02 47 HPLC:Chl-b mg/m^3 0.144 0.144 48 HPLC:C2mgdg mg/m^3 0.4E-02 0.4E-02 49 HPLC:DVChl-a mg/m^3 0 0 50 HPLC:Chl-a mg/m^3 0.906 0.906 51 HPLC:Phe mg/m^3 0 0 52 HPLC:B-Car mg/m^3 0.19E-01 0.19E-01 53 HPLC:TChl-a mg/m^3 0.906 0.906 54 Flag:HPLC ' ' 55 Carbon:Dissolved:Inorganic umol/kg 1930.6 2134.6 56 Flag:Carbon:Dissolved:Inorganic n/a 57 Alkalinity:Total umol/kg 2048.1 2212.1 58 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 5 I I 0 3 -99 ' ' 5 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 -99 ' ' 5 I I 0 12 -99 ' ' 6 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 8 F R4 3 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 -99 ' ' 7 F ' ' 1 28 -99 ' ' 8 F R4 3 29 -99 ' ' 8 F R4 3 30 -99 ' ' 8 F R4 3 31 -99 ' ' 8 F R4 3 32 -99 ' ' 8 F R4 3 33 -99 ' ' 8 F R4 3 34 -99 ' ' 8 F R4 3 35 -99 ' ' 8 F R4 3 36 -99 ' ' 8 F R4 3 37 -99 ' ' 8 F R4 3 38 -99 ' ' 8 F R4 3 39 -99 ' ' 8 F R4 3 40 -99 ' ' 8 F R4 3 41 -99 ' ' 8 F R4 3 42 -99 ' ' 8 F R4 3 43 -99 ' ' 8 F R4 3 44 -99 ' ' 8 F R4 3 45 -99 ' ' 8 F R4 3 46 -99 ' ' 8 F R4 3 47 -99 ' ' 8 F R4 3 48 -99 ' ' 8 F R4 3 49 -99 ' ' 8 F R4 3 50 -99 ' ' 8 F R4 3 51 -99 ' ' 8 F R4 3 52 -99 ' ' 8 F R4 3 53 -99 ' ' 8 F R4 3 54 0 ' ' 3 NQ C ' ' 55 -99 ' ' ' ' F7.1 R4 ' ' 56 0 ' ' 3 NQ C ' ' 57 -99 ' ' ' ' F7.1 R4 ' ' 58 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2017-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : JF2 EVENT NUMBER : 111 LATITUDE : 48 17.91000 N ! (deg min) LONGITUDE : 124 0.05000 W ! (deg min) WATER DEPTH : 187 ALTIMETER (M) : 5.01 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 5013 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 3234 Fluorometer:Seapoint ' ' 3642 'Transmissometer:WET Labs C-Star' ' ' 1185DR Altimeter ' ' ' ' PAR/Irradiance:Biospherical/Licor ' ' 70613 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.1.8 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/04/13 14:43:04 2892 2892 CLEAN 5.2.2 2017/04/13 14:45:57 2892 2892 ADDSAMP 3.6 2017/04/13 15:21:11 2892 2892 BINAVE 4.2 2017/04/20 12:59:25 2892 12 MERGE 3.5 2017/05/04 11:10:47 12 12 CLEAN 5.2.2 2017/05/04 11:11:06 12 12 CALIB 11.9 2017/05/04 11:11:12 12 12 SORT 3.6 2017/05/05 09:35:42 12 12 REMOVECH 8.2 2017/05/05 09:35:47 12 12 CHGUNITS 3.1.1 2017/05/05 09:44:44 12 12 CHGUNITS 3.1.1 2017/05/05 09:44:59 12 12 REORDER 1.3.1 2017/05/05 09:45:25 ? ? HDREDIT2 3.1.1 2017/06/30 11:58:10 ? ? REMOVECH 8.2 2017/06/30 12:21:23 12 12 SORT 3.6 2020/09/02 18:42:09 12 12 REORDER 1.3.1 2021/12/06 11:51:49 ? ? MERGE 3.5.1 2021/12/06 11:54:24 12 12 SORT 3.6 2021/12/06 11:54:31 12 12 CLEAN 5.2.4 2021/12/06 11:54:38 12 12 HDREDIT2 3.2 2021/12/06 12:20:43 ? ? HDREDIT2 3.2 2021/12/06 12:21:08 ? ? SORT 3.6 2021/12/06 13:21:18 12 12 MERGE 3.6 2021/12/06 13:22:06 12 12 SORT 3.6 2021/12/06 13:22:26 12 12 CLEAN 5.2.4 2021/12/06 13:22:35 12 12 HDREDIT2 3.2 2021/12/06 13:23:13 ? ? $END $REMARKS -CLEAN functions: 2017/04/13 14:45:33 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2017-01\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2017/05/04 11:10:47 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.samavg Secondary file: P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2017/05/04 11:06:46 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2017/05/04 11:11:03 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Delete Empty Channels: 0 deleted. -CALIB parameters: 2017/05/04 11:11:12 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2017-01\Processing\doc\2017-01-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 19 Oxygen:Dissolved:SBE mL/L 10 0.4130000E-01 0.1048400E+01 -SORT parameters: 2017/05/05 09:35:42 Sorted in ascending order of channel Pressure* -REMOVECH 2017/05/05 09:35:47 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary [deg C (ITS90)] Salinity reference channel: Salinity:T0:C0 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 [PSS-78] 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2017/06/30 11:58:10 Applied edit header: P:\Cruise_Data_Processing\2017-01\Processing\doc\HYDRO\2017-01-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 8: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 15: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 16: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 17: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 18: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 19: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 20: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 23: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 24: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 25: Silicate [umol/L] Units: ==> umol/L Channel 26: Flag:Silicate [n/a] Units: ==> n/a Channel 27: Phosphate [umol/L] Units: ==> umol/L Channel 28: Flag:Phosphate [n/a] Units: ==> n/a -REMOVECH 2017/06/30 12:21:23 The following CHANNEL(S) were removed: Transmissivity [%/metre] -SORT parameters: 2020/09/02 18:42:09 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2021/12/06 11:54:24 Merge Channel: sample_number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: HPLC:Chl-c3 [ ], HPLC:Chlide-a [ ], HPLC:MgDVP [ ], HPLC:Chl-c2 [ ], HPLC:Chl-c1 [ ], HPLC:Me-chlide [ ], HPLC:Peri [ ], HPLC:Pheide-a [ ], HPLC:But-fuco [ ], HPLC:Fuco [ ], HPLC:Neo [ ], HPLC:Pras [ ], HPLC:Viola [ ], HPLC:Hex-fuco [ ], HPLC:Diadino [ ], HPLC:Allo [ ], HPLC:Diato [ ], HPLC:Zea [ ], HPLC:Lut [ ], HPLC:Chl-b [ ], HPLC:C2mgdg, HPLC:DVChl-a [ ], HPLC:Chl-a [ ], HPLC:Phe [ ], HPLC:B-Car [ ], HPLC:TChl-a [ ], Flag:HPLC [ ] Primary file : C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2017\2017-001_Nov2021\Processing\ IOS\2017-001-0111.che2 Secondary file: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2017\2017-001_Nov2021\Processing\ IOS\2017-001-0111.hplc -SORT parameters: 2021/12/06 11:54:31 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2021/12/06 11:54:37 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2021/12/06 12:20:43 Applied edit header: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2017\2017-001-bot-hdr1.txt Channel 2: Bottle_Number [n/a] Format: I3 ==> I5 Channel 3: Bottle:Firing_Sequence [n/a] Format: I3 ==> I5 Channel 28: HPLC:Chl-c3 [mg/m^3] Units: ==> mg/m^3 Channel 29: HPLC:Chlide-a [mg/m^3] Units: ==> mg/m^3 Channel 30: HPLC:MgDVP [mg/m^3] Units: ==> mg/m^3 Channel 31: HPLC:Chl-c2 [mg/m^3] Units: ==> mg/m^3 Channel 32: HPLC:Chl-c1 [mg/m^3] Units: ==> mg/m^3 Channel 33: HPLC:Me-chlide [mg/m^3] Units: ==> mg/m^3 Channel 34: HPLC:Peri [mg/m^3] Units: ==> mg/m^3 Channel 35: HPLC:Pheide-a [mg/m^3] Units: ==> mg/m^3 Channel 36: HPLC:But-fuco [mg/m^3] Units: ==> mg/m^3 Channel 37: HPLC:Fuco [mg/m^3] Units: ==> mg/m^3 Channel 38: HPLC:Neo [mg/m^3] Units: ==> mg/m^3 Channel 39: HPLC:Pras [mg/m^3] Units: ==> mg/m^3 Channel 40: HPLC:Viola [mg/m^3] Units: ==> mg/m^3 Channel 41: HPLC:Hex-fuco [mg/m^3] Units: ==> mg/m^3 Channel 42: HPLC:Diadino [mg/m^3] Units: ==> mg/m^3 Channel 43: HPLC:Allo [mg/m^3] Units: ==> mg/m^3 Channel 44: HPLC:Diato [mg/m^3] Units: ==> mg/m^3 Channel 45: HPLC:Zea [mg/m^3] Units: ==> mg/m^3 Channel 46: HPLC:Lut [mg/m^3] Units: ==> mg/m^3 Channel 47: HPLC:Chl-b [mg/m^3] Units: ==> mg/m^3 Channel 48: HPLC:C2mgdg [mg/m^3] Units: ==> mg/m^3 Channel 49: HPLC:DVChl-a [mg/m^3] Units: ==> mg/m^3 Channel 50: HPLC:Chl-a [mg/m^3] Units: ==> mg/m^3 Channel 51: HPLC:Phe [mg/m^3] Units: ==> mg/m^3 Channel 52: HPLC:B-Car [mg/m^3] Units: ==> mg/m^3 Channel 53: HPLC:TChl-a [mg/m^3] Units: ==> mg/m^3 -HEADER EDITS: 2021/12/06 12:21:08 Applied edit header: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2017\2017-001-bot-hdr2.txt -SORT parameters: 2021/12/06 13:21:18 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2021/12/06 13:22:06 Merge Channel: Sample_Number Merge Scheme Used: 2: Add Secondary to Closest Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic [ ], Flag:Carbon:Dissolved:Inorganic [ ], Alkalinity:Total [ ], Flag:Alkalinity:Total [ ], pH [ ], Flag:pH [ ] Primary file : C:\Users\huntingtons\Desktop\Carbon Additions\2017-001_Nov2021\2017-001-0111.srt1 Secondary file: C:\Users\huntingtons\Desktop\Carbon Additions\2017-001_Nov2021\2017-001-0111.dic 12 secondary records matched to primary records. -SORT parameters: 2021/12/06 13:22:26 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2021/12/06 13:22:35 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2021/12/06 13:23:13 Applied edit header: C:\Users\huntingtons\Desktop\Carbon Additions\2017-001\Processing\Doc\2017- 001_carbon_header.txt Channel 55: Carbon:Dissolved:Inorganic [umol/kg] Units: ==> umol/kg Channel 56: Flag:Carbon:Dissolved:Inorganic [n/a] Units: ==> n/a Channel 57: Alkalinity:Total [umol/kg] Units: ==> umol/kg Channel 58: Flag:Alkalinity:Total [n/a] Units: ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2017-01\2017-01-0111.hex Software Version Seasave V 7.26.1.8 Temperature SN = 2023 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Feb 19 2017 11:32:24 NMEA Latitude = 48 17.91 N NMEA Longitude = 124 00.05 W NMEA UTC (Time) = Feb 19 2017 11:30:59 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2017-01 Ship: J.P. Tully Station: JF2 Depth: 187 System UTC = Feb 19 2017 11:32:24 # nquan = 20 # nvalues = 2892 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = depSM: Depth [salt water, m] # name 5 = t090C: Temperature [ITS-90, deg C] # name 6 = t190C: Temperature, 2 [ITS-90, deg C] # name 7 = c0S/m: Conductivity [S/m] # name 8 = c1S/m: Conductivity, 2 [S/m] # name 9 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 10 = flSP: Fluorescence, Seapoint # name 11 = sbeox0V: Oxygen raw, SBE 43 [V] # name 12 = par: PAR/Irradiance, Biospherical/Licor # name 13 = altM: Altimeter [m] # name 14 = dz/dtM: Descent Rate [m/s] # name 15 = pumps: Pump Status # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 19 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Feb 19 2017 11:30:59 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2023 # 10-Sep-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.11048516e-003 # 6.24565490e-004 # 1.96666631e-005 # 1.85234178e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 10-Sep-15 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22512416e+000 # 5.08029948e-001 # -5.48074267e-004 # 5.23434750e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 14-Sep-15 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99995814 # -1.47352 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 5013 # 10-Sep-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36826360e-003 # 6.37587653e-004 # 2.07609960e-005 # 1.71319350e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 10-Sep-15 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62856993e+000 # 1.47749217e+000 # -2.04620739e-003 # 2.40845077e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 3234 # 03-Nov-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.3831e-001 # -0.5530 # -3.6948e-003 # 1.5409e-004 # -2.3179e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 2.1700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3642 # # # 0 # 0.000 # # # # # # 1185DR # APR 27. 2016 # 19.3479 # -1.1028 # 0.250 # # # # # # # # # # # 15.000 # 0.000 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460813 # # # # # # # datcnv_date = Apr 13 2017 14:41:49, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2017-01\raw\CTD\2017-01-0111.hex P:\Crui se_Data_Processing\2017-01\Processing\doc\2017-01-ctd3.XMLCON # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Comments from secondary file: P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.chl ------------------------------------------------------------------- Sample_Number 625: CHL: %CV>10 Sample_Number 627: CHL: %CV>10 Comments from secondary file: P:\Cruise_Data_Processing\2017-01\Processing\hydro\2017-01-0111.oxy ------------------------------------------------------------------- Sample_Number 616: OXY: Leaky Niskin spigot. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 within ~2 weeks of the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.01-1.69 ug/l. Average %CV for this cruise was 3.72% with 7 out of 104 duplicate pairs having a CV>10% and 1 out of 104 duplicate pairs having a CV>30%. Our average dataset %CV is 2.83 % for 2013 - 2015 so the overall quality of this dataset is within 1 standard deviation of this average and is very good. For details see worksheet “CV%” in file QF2017-01CHL*.xls. HPLC samples were filtered onto 47mm GF/F filters and stored at -80C prior to analysis. Samples were extracted in 95% methanol at -20C for 24 hours in the lab and analyzed on a WATERS 2695 HPLC separations system as detailed in Nemcek and Pena, 2014. Analysis was performed ~1 month after collection. The average of two samples is reported. Variability is assessed as the %CV (std dev/mean*100) for duplicate pairs. All pigments below the limit of detection (LOD) are assigned a zero value. TChl-a is the sum of Chl-a, DVchl-a, Chlide-a and Me-chlide For further information see file QF 2017-001_HPLC*.xlsx. Oxygen samples were analyzed at sea and on shore using an automated Winkler titration system (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2017-01OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 7 - 25 days after collection. For details including a duplicate analysis, see document QF2017-01SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2017-01nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100 deg C (with a dewar containing boiling water) onto a Choromasorb 330 column which eluted onto a Flame Photometric Detector (FPD). All samples were run as soon as possible after being collected. For more detail see file "2017-01 DMS report.doc" and for data and duplicate analysis see "DMS summary (2017-01).xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.1nmol/L. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Nemcek, N. and Peña, M.A. 2014. Institute of Ocean Sciences Protocols for Phytoplankton Pigment Analysis by HPLC. Can. Tech. Rep. Fish. Aquat. Sci. 3117: x + 80 p. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. The Transmissivity channel was removed because of frequent shifts in values during casts and large variations between values during repeat casts. The data are available, by request, from the chief scientist. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2017-01_Processing_Report.doc. --------------------------------------------------------------------------------- Comments from secondary file: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2017\2017-001_Nov2021\Processing\IOS\2017-001-0111. hplc --------------------------------------------------------------------------- Sample_Number 627: HPLC: T chl a>10%CV Dissolved inorganic carbon (DIC) was determined using coulometric analysis of unfiltered samples. Total alkalinity (Alk) was determined by potentiometric titration. pH on the total hydrogen ion concentration scale was determined photometrically and is reported at 25C and surface pressure. Complete documentation on DIC, ALK and pH sampling, analysis and precision estimates can be found in the Carbon Excel file from the cruise located in the cruise "DOC" directory. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.413E-01 1.0484) $END !-1-- -2-- -3-- --4--- ---5---- ---6--- --7--- ---8---- --9--- --10- -11- --12- ---13--- 14 ---15-- --16- 17 --18-- 19 --20-- 21 ---22-- 23 --24-- 25 --26-- --27-- ---28-- ---29-- ---30-- ---31-- ---32-- ---33-- ---34-- ---35-- ---36-- ---37-- ---38-- ---39-- ---40-- ---41-- ---42-- ---43-- ---44-- ---45-- ---46-- ---47-- ---48-- ---49-- ---50-- ---51-- ---52-- ---53-- 54 --55-- 56 --57-- 58 !Samp Bott Bott Pressu Temperat Fluores PAR Salinity Oxygen Oxyge Numb Tempe Salinity Fl Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl Chloro Fl Phaeo- Depth HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC:B- HPLC: Fl Carbon Fl Alkali Fl !le_ le_ le:F re ure: cence: :T0:C0 : n: er_o ratur :Bottle ag Dissolv n: ag e_ ag te ag te ag phyll: ag Pigmen Chl-c3 Chlide- MgDVP Chl-c2 Chl-c1 Me- Peri Pheide- But- Fuco Neo Pras Viola Hex- Diadino Allo Diato Zea Lut Chl-b C2mgdg DVChl-a Chl-a Phe Car TChl-a ag :Disso ag nity: ag !Numb Numb ~ng_ Primary URU: Dissol Disso ~bin e: ~o ed Disso ~o plus_ ~t ~i ~p Extrac ~a t: a chlide a fuco fuco : lved: ~g Total ~T !er er Sequ Seapoin ved: lved: _rec Draw tt lved lv Nitrit ri ca ha ted ct Extrac HP Inorga an ot ! ence t SBE SBE ords le ed e te te te ed ted LC nic ic al !---- ---- ---- ------ -------- ------- ------ -------- ------ ----- ---- ----- -------- -- ------- ----- -- ------ -- ------ -- ------- -- ------ -- ------ ------ ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- -- ------ -- ------ -- *END OF HEADER 627 12 12 0.7 7.8686 0.960 0.1 29.6122 6.56 286.3 241 7.9 -99.0000 0 6.479 282.7 0 16.19 0 33.16 0 1.353 0 0.97 36 0.47 0.7 0.021 0.000 0.014 0.078 0.000 0.000 0.042 0.000 0.010 0.213 0.015 0.034 0.020 0.016 0.034 0.082 0.000 0.002 0.002 0.144 0.004 0.000 0.906 0.000 0.019 0.906 36 1930.6 0 2048.1 0 626 11 11 5.2 7.7358 0.991 0.0 30.6151 6.18 269.5 241 7.9 30.7043 0 6.135 267.5 0 20.13 0 36.61 0 1.711 0 -99.00 0 -99.00 5.1 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2001.1 0 2099.0 0 625 10 10 10.4 7.6699 0.950 0.0 31.1248 5.96 259.6 241 7.8 -99.0000 0 5.954 259.5 6 21.69 0 37.32 0 1.824 0 0.51 36 0.12 10.3 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2026.8 0 2126.4 0 624 9 9 19.9 7.6479 0.916 0.0 31.1559 5.96 259.9 241 7.7 -99.0000 0 5.865 255.6 0 22.31 0 37.14 0 1.862 0 0.77 6 0.31 19.7 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2034.8 0 2114.3 0 623 8 8 30.5 7.6656 0.364 0.0 31.3535 5.52 240.5 241 7.8 -99.0000 0 5.496 239.5 0 23.83 0 39.42 0 1.933 0 -99.00 0 -99.00 30.3 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2052.4 0 2135.4 0 622 7 7 40.7 7.6940 0.312 0.0 31.4048 5.44 237.1 241 7.9 -99.0000 0 5.415 236.0 0 24.08 0 40.62 0 1.975 0 -99.00 0 -99.00 40.3 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2055.2 6 2127.2 6 621 6 6 49.9 7.7511 0.289 0.0 31.4477 5.36 233.8 241 7.9 -99.0000 0 5.345 232.9 0 24.21 6 40.98 6 1.959 6 -99.00 0 -99.00 49.5 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2059.8 0 2127.3 0 620 5 5 74.9 7.7989 0.215 0.0 31.5723 5.31 231.4 241 8.0 -99.0000 0 5.324 232.0 0 23.57 0 39.56 0 1.935 0 -99.00 0 -99.00 74.3 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2063.7 0 2133.8 0 619 4 4 100.8 7.9321 0.180 0.0 31.8183 5.16 224.9 241 8.1 -99.0000 0 5.110 222.6 6 22.95 0 37.40 0 1.869 0 -99.00 0 -99.00 99.9 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2074.9 0 2159.8 0 618 3 3 125.6 8.1136 0.207 0.0 32.1371 4.74 206.3 241 8.3 -99.0000 0 4.729 206.0 0 23.36 0 37.25 0 1.901 0 -99.00 0 -99.00 124.5 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2092.0 6 2167.0 6 617 2 2 150.7 8.2648 0.182 0.0 32.4055 4.52 197.0 241 8.5 -99.0000 0 4.516 196.7 0 22.80 0 35.18 0 1.845 0 -99.00 0 -99.00 149.4 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2104.0 0 2176.9 0 616 1 1 181.9 8.6082 0.162 0.0 33.0825 3.92 170.7 241 8.7 -99.0000 0 3.942 171.6 3 22.17 6 31.38 6 1.782 6 -99.00 0 -99.00 180.3 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2134.6 0 2212.1 0