*2016/12/23 08:53:21.40 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/09/07 19:00:40.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 54 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : BF0A58BA NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 2.815 55.847 2 Temperature:Secondary 'deg C (ITS90)' 8.347 13.4157 3 Transmissivity %/metre 44.1 57.9 4 Fluorescence:URU:Seapoint mg/m^3 0.195 1.747 5 PAR uE/m^2/sec 0.7 235.125 6 Salinity:T1:C1 PSS-78 31.9102 32.9337 7 Oxygen:Dissolved:SBE mL/L 3.837 6.037 8 Oxygen:Dissolved:SBE umol/kg 167.0189 263.2123 9 Number_of_bin_records n/a 12 37 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 6 F ' ' 1 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2016-62\Pro $END *ADMINISTRATION MISSION : 2016-62 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse Zooplankton Monitoring SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : CS07 EVENT NUMBER : 135 LATITUDE : 51 4.56000 N ! (deg min) LONGITUDE : 128 43.95000 W ! (deg min) WATER DEPTH : 64 ALTIMETER (M) : 9.08 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4752 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2710 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 0997 Fluorometer:Seapoint ' ' 3640 'Transmissometer:WET Labs C-Star' ' ' 1185DR Altimeter ' ' 62354 PAR/Irradiance:Biospherical/Licor ' ' 70613 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.1.8 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5 2016/12/12 15:47:13 4129 4129 CLEAN 5.2.1 2016/12/15 09:04:26 4129 4129 SHIFTDAT 3.4 2016/12/15 09:15:02 4129 4129 SHIFTDAT 3.4 2016/12/15 09:25:24 4129 4129 SHIFTDAT 3.4 2016/12/15 09:35:57 4129 4129 DELETE 6.3 2016/12/15 09:44:05 4129 1336 CTDEDIT 5.2.3 2016/12/21 09:17:25 1336 1123 CALIB 11.9 2016/12/22 15:51:55 1123 1123 FILTERS 4.3 2016/12/22 16:27:57 1123 1123 BINAVE 4.2 2016/12/22 16:31:48 1123 54 REMOVECH 8.2 2016/12/23 08:36:44 54 54 CHGUNITS 3.1.1 2016/12/23 08:37:10 54 54 REORDER 1.3.1 2016/12/23 08:37:34 ? ? HDREDIT2 3.0.2 2016/12/23 08:53:21 ? ? $END $REMARKS -CLEAN functions: 2016/12/15 08:55:24 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= 0.30 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 46.45 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2016/12/21 09:17:25 213 records were deleted in this editing session. 45 changes in channel Salinity:T1:C1 -CALIB parameters: 2016/12/22 15:51:55 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Oxygen:Dissolved:SBE mL/L 10 0.2330000E-01 0.1024800E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2016/12/23 08:36:44 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2016/12/23 08:53:21 Applied edit header: P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 5: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 9: Number_of_bin_records [n/a] Pad: ' ' ==> -99 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2016-62\2016-62-0135.hex Software Version Seasave V 7.26.1.8 Temperature SN = 4752 Conductivity SN = 2280 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Sep 07 2016 19:05:29 NMEA Latitude = 51 04.56 N NMEA Longitude = 128 43.95 W NMEA UTC (Time) = Sep 07 2016 19:00:40 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2016-62 Ship: J.P. Tully Station: CS07 Depth: 64 System UTC = Sep 07 2016 19:05:29 # nquan = 17 # nvalues = 4129 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = par: PAR/Irradiance, Biospherical/Licor # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = altM: Altimeter [m] # name 11 = dz/dtM: Descent Rate [m/s] # name 12 = pumps: Pump Status # name 13 = sal00: Salinity, Practical [PSU] # name 14 = sal11: Salinity, Practical, 2 [PSU] # name 15 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 16 = flag: flag # span 0 = 1, 4129 # span 1 = 1.669, 56.452 # span 2 = 8.3371, 13.4948 # span 3 = 8.3341, 13.4984 # span 4 = 3.461297, 3.813609 # span 5 = 3.460849, 3.813902 # span 6 = 75.5328, 87.2502 # span 7 = 1.7094e-01, 2.1123e+00 # span 8 = 6.6361e-01, 1.0632e+03 # span 9 = 2.0731, 3.1783 # span 10 = 0.00, 100.00 # span 11 = -1.493, 2.018 # span 12 = 0, 1 # span 13 = 31.4955, 32.9421 # span 14 = 31.6479, 32.9416 # span 15 = 3.6565, 5.9120 # span 16 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Sep 07 2016 19:00:40 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4752 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35917908e-003 # 6.36752535e-004 # 2.08584233e-005 # 1.76255754e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2280 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00904009e+001 # 1.35149315e+000 # -1.84720682e-003 # 1.90856808e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0443 # 17-Dec-14 # -4.435292e+004 # -1.635794e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993627e+001 # -3.271008e-004 # 3.759160e-006 # 1.565300e-009 # 0.99991613 # -1.00000 # 0.000000e+000 # 1.282462e-002 # -8.599824e+000 # # # # # # 2710 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717385e-003 # 6.46681437e-004 # 2.34978657e-005 # 2.22502310e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2754 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.05920237e+001 # 1.61356129e+000 # -1.94911294e-003 # 2.41671700e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0997 # 17-Jan-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.0785e-001 # -0.6967 # -3.5082e-003 # 1.2934e-004 # -1.8411e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6200 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3640 # # # 2 # 0.000 # # # # # # 1185DR # APR 27. 2016 # 19.3479 # -1.1028 # 0.250 # # # # # # # # # 62354 # # 15.000 # 0.000 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460813 # # # # # # # datcnv_date = Nov 16 2016 14:43:58, 7.23.2 [datcnv_vars = 13] # datcnv_in = P:\Cruise_Data_Processing\2016-62\RAW\CTD\2016-62-0135.hex P:\Crui se_Data_Processing\2016-62\Processing\doc\2016-62-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Nov 16 2016 14:53:24, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2016-62\Processing\convert\2016-62-013 5.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 12 2016 14:46:35, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2016-62\Processing\wildedit\2016-62-01 35.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Dec 12 2016 14:55:48, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2016-62\Processing\align\2016-62-0135.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 12 2016 15:03:51, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2016-62\Processing\celltm\2016-62-0135.c nv P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.5 mL/L from 0 to 200db ±0.25 mL/L from 200db to 400db ±0.08 mL/L from 400db to 800db ±0.02 mL/L below 800db For details on the processing see document: 2016-62_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.233E-01 1.0248) $END !--1--- ---2---- --3-- ---4--- --5--- ---6---- --7--- --8-- -9-- !Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb !re ure: missi cence: :T1:C1 : n: er_o ! Secondar vity URU: Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ -------- ----- ------- ------ -------- ------ ----- ---- *END OF HEADER 2.8 13.4157 44.1 1.608 235.1 31.9102 6.02 262.6 20 4.0 13.4081 44.4 1.575 177.2 31.9124 6.04 263.2 22 5.1 13.4078 44.4 1.593 128.8 31.9125 6.04 263.2 17 6.1 13.4116 44.4 1.682 100.2 31.9119 6.01 261.9 15 7.0 13.4112 44.3 1.704 85.0 31.9124 6.00 261.5 16 8.0 13.3426 45.2 1.709 70.4 31.9245 6.00 261.4 13 9.1 13.3174 46.3 1.744 57.1 31.9273 5.99 261.2 22 9.9 13.3007 46.2 1.747 47.0 31.9297 5.96 259.8 23 10.9 13.1506 46.7 1.661 42.5 31.9516 5.89 257.0 27 12.0 13.0844 47.5 1.658 35.4 31.9626 5.81 253.1 19 13.0 13.0057 48.0 1.588 29.0 31.9743 5.72 249.2 18 14.0 12.6965 49.3 1.451 24.1 32.0158 5.66 246.6 20 15.0 12.2584 51.6 1.186 20.8 32.0881 5.60 243.9 26 16.0 12.2242 52.3 1.067 18.1 32.0922 5.46 238.1 25 17.0 11.9738 52.3 0.982 15.2 32.1365 5.33 232.1 26 18.0 11.6136 53.7 0.708 12.9 32.1946 5.21 227.2 30 19.0 11.5031 54.8 0.617 11.8 32.1996 5.11 222.6 31 20.0 11.3246 55.6 0.563 11.1 32.2033 5.03 219.2 21 21.0 11.1043 56.0 0.517 10.1 32.2261 4.99 217.6 18 22.0 10.9022 55.8 0.494 9.0 32.2383 4.97 216.7 18 23.0 10.7987 55.8 0.514 8.0 32.2450 4.94 215.1 19 24.0 10.7440 55.8 0.539 7.1 32.2486 4.88 212.5 22 25.0 10.6151 55.8 0.490 6.3 32.2535 4.84 211.0 24 26.0 10.4843 55.8 0.504 5.7 32.2601 4.82 209.9 31 27.0 10.4812 55.9 0.467 5.2 32.2601 4.76 207.3 37 28.0 10.3936 56.0 0.441 4.9 32.2600 4.70 204.5 23 29.0 10.2129 56.1 0.434 4.5 32.2745 4.67 203.3 18 30.0 10.0598 56.2 0.472 4.1 32.2876 4.65 202.6 16 31.0 10.0023 56.4 0.422 3.7 32.2940 4.64 202.2 18 32.0 9.9495 56.6 0.412 3.4 32.3099 4.63 201.8 24 33.0 9.9218 56.8 0.385 3.2 32.3212 4.64 202.3 30 34.0 9.7940 57.3 0.341 3.0 32.3617 4.64 202.0 27 35.0 9.7497 57.7 0.334 2.8 32.3863 4.61 200.7 22 36.0 9.6687 57.9 0.302 2.6 32.4202 4.57 198.8 22 37.0 9.5705 57.7 0.291 2.5 32.4686 4.50 196.2 21 38.0 9.4896 57.8 0.277 2.4 32.5028 4.44 193.2 19 39.0 9.3601 57.7 0.287 2.2 32.5673 4.37 190.1 17 40.0 9.1595 57.5 0.268 2.1 32.6587 4.29 186.8 19 41.0 8.9303 57.5 0.252 1.9 32.7253 4.22 183.7 23 42.0 8.6666 57.3 0.240 1.8 32.8006 4.14 180.5 34 43.0 8.6038 57.1 0.245 1.7 32.8205 4.08 177.6 28 44.0 8.5891 57.1 0.230 1.6 32.8257 4.04 176.0 19 45.0 8.5846 57.1 0.216 1.6 32.8278 4.03 175.2 17 46.0 8.5786 57.1 0.268 1.5 32.8307 4.00 174.3 16 47.0 8.5700 57.0 0.235 1.4 32.8347 3.98 173.2 15 48.0 8.5586 57.0 0.234 1.3 32.8408 3.96 172.4 15 49.0 8.4859 56.8 0.248 1.2 32.8753 3.95 171.9 15 50.0 8.4323 56.7 0.211 1.1 32.8970 3.94 171.4 17 50.8 8.4222 56.7 0.200 1.0 32.9004 3.92 170.6 15 52.1 8.3973 56.6 0.195 1.0 32.9133 3.86 168.1 17 53.0 8.3717 56.6 0.210 0.9 32.9236 3.85 167.6 16 54.0 8.3645 56.5 0.236 0.8 32.9273 3.84 167.2 12 55.0 8.3538 56.5 0.213 0.8 32.9316 3.84 167.1 12 55.9 8.3470 56.3 0.197 0.7 32.9337 3.84 167.0 12