*2016/12/23 08:53:16.41 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/09/03 17:26:16.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 51 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : B3889ABA NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 3.151 52.856 2 Temperature:Secondary 'deg C (ITS90)' 8.3957 12.8241 3 Transmissivity %/metre 28.4 51.5 4 Fluorescence:URU:Seapoint mg/m^3 0.205 3.514 5 PAR uE/m^2/sec 0.176 713.265 6 Salinity:T1:C1 PSS-78 31.8835 33.0265 7 Oxygen:Dissolved:SBE mL/L 2.604 6.304 8 Oxygen:Dissolved:SBE umol/kg 113.3429 274.8276 9 Number_of_bin_records n/a 21 58 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 6 F ' ' 1 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2016-62\Pro $END *ADMINISTRATION MISSION : 2016-62 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse Zooplankton Monitoring SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : LD04 EVENT NUMBER : 60 LATITUDE : 48 53.18000 N ! (deg min) LONGITUDE : 125 57.05000 W ! (deg min) WATER DEPTH : 62 ALTIMETER (M) : 9.43 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4752 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2710 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 0997 Fluorometer:Seapoint ' ' 3640 'Transmissometer:WET Labs C-Star' ' ' 1185DR Altimeter ' ' 62354 PAR/Irradiance:Biospherical/Licor ' ' 70613 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.1.8 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5 2016/12/12 15:38:42 9876 9876 CLEAN 5.2.1 2016/12/15 08:58:35 9876 9876 SHIFTDAT 3.4 2016/12/15 09:09:30 9876 9876 SHIFTDAT 3.4 2016/12/15 09:19:58 9876 9876 SHIFTDAT 3.4 2016/12/15 09:30:21 9876 9876 DELETE 6.3 2016/12/15 09:40:02 9876 1600 CTDEDIT 5.2.3 2016/12/19 11:58:28 1600 1510 CALIB 11.9 2016/12/22 15:49:18 1510 1510 FILTERS 4.3 2016/12/22 16:25:26 1510 1510 BINAVE 4.2 2016/12/22 16:30:37 1510 51 REMOVECH 8.2 2016/12/23 08:36:37 51 51 CHGUNITS 3.1.1 2016/12/23 08:37:03 51 51 REORDER 1.3.1 2016/12/23 08:37:28 ? ? HDREDIT2 3.0.2 2016/12/23 08:53:16 ? ? $END $REMARKS -CLEAN functions: 2016/12/15 08:55:24 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= 0.30 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 43.72 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.2.3 2016/12/19 11:58:28 90 records were deleted in this editing session. 7 changes in channel Salinity:T1:C1 -CALIB parameters: 2016/12/22 15:49:18 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Oxygen:Dissolved:SBE mL/L 10 0.2330000E-01 0.1024800E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2016/12/23 08:36:37 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2016/12/23 08:53:16 Applied edit header: P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-HDR.TXT Channel 1: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 5: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 9: Number_of_bin_records [n/a] Pad: ' ' ==> -99 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2016-62\2016-62-0060.hex Software Version Seasave V 7.26.1.8 Temperature SN = 4752 Conductivity SN = 2280 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Sep 03 2016 17:30:53 NMEA Latitude = 48 53.18 N NMEA Longitude = 125 57.05 W NMEA UTC (Time) = Sep 03 2016 17:26:16 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2016-62 Ship: J.P. Tully Station: LD04 Depth: 62 System UTC = Sep 03 2016 17:30:53 # nquan = 17 # nvalues = 9876 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = par: PAR/Irradiance, Biospherical/Licor # name 9 = sbeox0V: Oxygen raw, SBE 43 [V] # name 10 = altM: Altimeter [m] # name 11 = dz/dtM: Descent Rate [m/s] # name 12 = pumps: Pump Status # name 13 = sal00: Salinity, Practical [PSU] # name 14 = sal11: Salinity, Practical, 2 [PSU] # name 15 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 16 = flag: flag # span 0 = 1, 9876 # span 1 = 2.374, 53.719 # span 2 = 8.3922, 12.8295 # span 3 = 8.3916, 12.8299 # span 4 = 3.474562, 3.756846 # span 5 = 3.473957, 3.756844 # span 6 = 66.6975, 84.7934 # span 7 = 1.9536e-01, 4.0171e+00 # span 8 = 1.3440e-01, 1.2066e+03 # span 9 = 1.6176, 3.2442 # span 10 = 8.91, 59.61 # span 11 = -1.143, 1.184 # span 12 = 0, 1 # span 13 = 31.8751, 33.0387 # span 14 = 31.8775, 33.0370 # span 15 = 2.4413, 6.1387 # span 16 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Sep 03 2016 17:26:16 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4752 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35917908e-003 # 6.36752535e-004 # 2.08584233e-005 # 1.76255754e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2280 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00904009e+001 # 1.35149315e+000 # -1.84720682e-003 # 1.90856808e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0443 # 17-Dec-14 # -4.435292e+004 # -1.635794e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993627e+001 # -3.271008e-004 # 3.759160e-006 # 1.565300e-009 # 0.99991613 # -1.00000 # 0.000000e+000 # 1.282462e-002 # -8.599824e+000 # # # # # # 2710 # 16-Dec-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717385e-003 # 6.46681437e-004 # 2.34978657e-005 # 2.22502310e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2754 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.05920237e+001 # 1.61356129e+000 # -1.94911294e-003 # 2.41671700e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0997 # 17-Jan-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.0785e-001 # -0.6967 # -3.5082e-003 # 1.2934e-004 # -1.8411e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6200 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3640 # # # 2 # 0.000 # # # # # # 1185DR # APR 27. 2016 # 19.3479 # -1.1028 # 0.250 # # # # # # # # # 62354 # # 15.000 # 0.000 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460813 # # # # # # # datcnv_date = Nov 16 2016 14:41:16, 7.23.2 [datcnv_vars = 13] # datcnv_in = P:\Cruise_Data_Processing\2016-62\RAW\CTD\2016-62-0060.hex P:\Crui se_Data_Processing\2016-62\Processing\doc\2016-62-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Nov 16 2016 14:51:06, 7.23.2 # wildedit_in = P:\Cruise_Data_Processing\2016-62\Processing\convert\2016-62-006 0.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 12 2016 14:44:12, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2016-62\Processing\wildedit\2016-62-00 60.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Dec 12 2016 14:53:02, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2016-62\Processing\align\2016-62-0060.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 12 2016 15:01:06, 7.23.2 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2016-62\Processing\celltm\2016-62-0060.c nv P:\Cruise_Data_Processing\2016-62\Processing\doc\2016-62-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. The SBE DO sensor has a fairly long response time so data accuracy is not as high when it is in motion as it is during stops for bottles. This will be especially true when vertical DO gradients are large. To get an estimate of the accuracy of the SBE DO data during downcasts (after recalibration) a rough comparison was made between downcast SBE DO and upcast titrated samples. Some of the difference will be due to problems with flushing of Niskin bottles and/or analysis errors, so the following statement likely underestimates SBE DO accuracy. Downcast (CTD files) Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.5 mL/L from 0 to 200db ±0.25 mL/L from 200db to 400db ±0.08 mL/L from 400db to 800db ±0.02 mL/L below 800db For details on the processing see document: 2016-62_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.233E-01 1.0248) $END !--1--- ---2---- --3-- ---4--- --5--- ---6---- --7--- --8-- -9-- !Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb !re ure: missi cence: :T1:C1 : n: er_o ! Secondar vity URU: Dissol Disso ~bin ! y Seapoin ved: lved: _rec ! t SBE SBE ords !------ -------- ----- ------- ------ -------- ------ ----- ---- *END OF HEADER 3.1 12.8241 28.4 2.521 713.3 31.8835 6.30 274.5 37 4.0 12.8240 28.6 2.591 538.2 31.8888 6.30 274.8 58 4.9 12.8207 29.3 2.785 447.3 31.9046 6.29 274.1 39 6.0 12.7989 31.2 3.099 337.4 31.9339 6.24 271.9 32 7.0 12.6519 34.2 3.007 249.8 32.0299 6.19 269.7 41 8.0 12.4448 35.1 3.132 204.0 32.0367 6.02 262.4 35 9.0 12.2075 34.6 3.514 151.8 32.0278 5.88 256.5 27 10.1 11.9016 35.7 3.152 109.5 32.0494 5.77 251.6 38 11.0 11.7953 36.5 2.774 88.6 32.1483 5.59 243.7 40 12.0 11.4612 38.6 2.537 73.1 32.2020 5.40 235.2 27 13.0 11.1575 39.9 2.449 56.5 32.2226 5.20 226.7 26 14.0 10.8781 40.9 2.238 44.1 32.2360 4.98 217.0 27 15.0 10.5725 39.4 1.795 35.4 32.2546 4.73 206.2 30 16.0 10.2430 44.1 1.501 30.1 32.2779 4.51 196.5 31 17.0 10.1357 45.3 1.326 25.7 32.2877 4.36 190.0 27 18.0 10.0683 45.9 1.206 21.9 32.2949 4.26 185.7 24 19.0 10.0057 45.8 1.157 18.7 32.3032 4.17 181.9 22 20.0 9.8593 46.6 1.054 16.1 32.3280 4.09 178.3 26 21.0 9.7869 47.0 0.992 13.9 32.3496 4.03 175.7 30 22.0 9.7695 47.5 0.934 12.1 32.3724 4.00 174.3 28 23.0 9.7379 48.2 0.886 10.6 32.3921 3.96 172.7 24 24.0 9.7134 48.7 0.837 9.3 32.4081 3.92 170.6 22 25.0 9.5544 49.1 0.764 8.1 32.4448 3.88 168.8 22 26.0 9.4750 49.7 0.661 7.1 32.4970 3.84 167.1 25 27.0 9.4578 49.9 0.570 6.2 32.5325 3.79 165.1 31 28.0 9.4694 50.3 0.512 5.5 32.5507 3.77 164.1 28 29.0 9.4723 50.5 0.516 4.9 32.5665 3.78 164.6 22 30.0 9.4886 50.7 0.494 4.3 32.5778 3.81 166.1 21 31.0 9.5371 50.9 0.493 3.7 32.5941 3.84 167.0 24 32.0 9.4913 51.1 0.464 3.3 32.6067 3.80 165.4 30 33.0 9.4254 51.5 0.438 2.9 32.6197 3.69 160.6 27 34.0 9.2582 51.2 0.400 2.5 32.6290 3.58 156.0 22 35.0 9.2391 51.1 0.370 2.2 32.6355 3.52 153.5 21 36.0 9.2519 51.1 0.354 2.0 32.6480 3.44 149.9 21 37.0 9.0441 50.5 0.343 1.7 32.6716 3.31 144.3 24 38.0 8.9429 49.7 0.317 1.5 32.7221 3.22 140.1 28 39.0 8.9279 49.4 0.308 1.3 32.7318 3.16 137.7 29 40.0 8.9132 49.3 0.297 1.1 32.7381 3.11 135.5 25 41.0 8.8686 49.1 0.293 1.0 32.7594 3.07 133.5 22 42.0 8.7630 49.1 0.269 0.8 32.8065 3.01 130.9 23 43.0 8.7224 48.6 0.256 0.7 32.8191 2.94 128.2 28 44.0 8.6983 48.6 0.249 0.6 32.8312 2.89 125.7 28 45.0 8.6507 47.9 0.244 0.5 32.8552 2.83 123.3 24 46.0 8.5874 47.1 0.231 0.5 32.8919 2.78 120.9 25 47.0 8.5264 46.3 0.222 0.4 32.9290 2.73 118.8 30 48.0 8.4821 45.4 0.216 0.3 32.9571 2.69 116.9 34 49.0 8.4690 44.8 0.205 0.3 32.9667 2.66 115.8 32 50.0 8.4578 44.4 0.210 0.3 32.9748 2.64 114.9 39 51.0 8.4420 44.0 0.214 0.2 32.9859 2.61 113.8 43 52.0 8.4128 43.7 0.220 0.2 33.0079 2.60 113.3 50 52.9 8.3957 43.6 0.232 0.2 33.0265 2.62 113.9 39