*2016/10/21 09:14:56.17 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/07/22 14:11:26.000 TIME INCREMENT : 0 0 0 0.25 0 ! (day hr min sec ms) NUMBER OF RECORDS : 4 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 5CC0A0A7 NUMBER OF CHANNELS : 22 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 5 2 Bottle:Firing_Sequence n/a 1 5 3 Pressure decibar 6.888 239.269 4 Temperature:Primary 'deg C (ITS90)' 9.6232 14.2536 5 Transmissivity %/metre 17.4 41 6 Fluorescence:URU:Wetlabs mg/m^3 0.656 4.644 7 Salinity:T0:C0 PSS-78 25.7011 31.0005 8 Oxygen:Dissolved:SBE mL/L 3.394 5.731 9 Oxygen:Dissolved:SBE umol/kg 147.9823 251.0862 10 Number_of_bin_records n/a 15 41 11 Sample_Number n/a 5 8 12 Salinity:Bottle PSS-78 28.0748 31.0076 13 Flag:Salinity:Bottle ' ' 14 Chlorophyll:Extracted mg/m^3 0.43 7.18 15 Flag:Chlorophyll:Extracted ' ' 16 Phaeo-Pigment:Extracted mg/m^3 0.62 1.53 17 Nitrate_plus_Nitrite umol/L 8.89 25.66 18 Flag:Nitrate_plus_Nitrite ' ' 19 Silicate umol/L 24.81 45.19 20 Flag:Silicate ' ' 21 Phosphate umol/L 1.107 2.213 22 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 8 F R4 3 22 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2016-56 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Strait of Georgia Pelagic Ecosystem Survey SCIENTIST : Gauthier S. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : 41 EVENT NUMBER : 8 LATITUDE : 49 3.30000 N ! (deg min) LONGITUDE : 123 22.35000 W ! (deg min) WATER DEPTH : 239 ALTIMETER (M) : 7.18 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-25 SERIAL NUMBER : 1091 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 4700 Conductivity ' ' 3321 'Pressure:Strain Gauge' ' ' 1091 'Oxygen:SBE 43' ' ' 1483 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2216 Altimeter ' ' ' ' 'Transmissometer:WET Labs C-Star' ' ' 983DR $END $REMARKS SOFTWARE VERSION SEASAVE V 7.23.2 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2016/10/19 12:04:03 179 179 CLEAN 5.2.1 2016/10/19 12:45:38 179 179 ADDSAMP 3.6 2016/10/19 12:53:54 179 179 BINAVE 4.2 2016/10/19 13:26:56 179 5 MERGE 3.5 2016/10/20 09:16:02 5 5 CLEAN 5.2.1 2016/10/21 09:06:29 4 4 CALIB 11.9 2016/10/21 09:06:51 4 4 SORT 3.6 2016/10/21 09:06:55 4 4 REMOVECH 8.2 2016/10/21 09:07:05 4 4 CHGUNITS 3.1.1 2016/10/21 09:07:12 4 4 REORDER 1.3.1 2016/10/21 09:07:20 ? ? HDREDIT2 3.0.2 2016/10/21 09:14:56 ? ? $END $REMARKS -CLEAN functions: 2016/10/19 12:45:38 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2016-56\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2016/10/20 09:16:02 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2016-56\Processing\hydro\2016-56-0008.samavg Secondary file: P:\Cruise_Data_Processing\2016-56\Processing\hydro\2016-56-0008.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2016-56\Processing\hydro\2016-56-0008.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2016/10/20 09:15:23 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2016/10/21 09:06:28 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name -CALIB parameters: 2016/10/21 09:06:51 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-56\Processing\doc\2016-56-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1040000E+01 -SORT parameters: 2016/10/21 09:06:55 Sorted in ascending order of channel Pressure* -REMOVECH 2016/10/21 09:07:05 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2016/10/21 09:14:56 Applied edit header: P:\Cruise_Data_Processing\2016-56\Processing\doc\HYDRO\2016-56-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F11.3 ==> F7.2 Channel 12: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 14: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 16: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 17: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 19: Silicate [umol/L] Units: ==> umol/L Channel 21: Phosphate [umol/L] Units: ==> umol/L Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 25plus Data File: FileName = C:\CTD Data\2016-56\2016-56-0008.hex Software Version Seasave V 7.23.2 Temperature SN = 4700 Conductivity SN = 3321 System UpLoad Time = Jul 22 2016 14:14:54 NMEA Latitude = 49 03.30 N NMEA Longitude = 123 22.35 W NMEA UTC (Time) = Jul 22 2016 14:11:26 Store Lat/Lon Data = Append to Every Scan Ship: W.E. Ricker 2016-56 Station: 41 Operator: mel Depth: 239 Real-Time Sample Interval = 0.2500 seconds Baud rate = 9600 Using SBE 33 or SBE 36 deck unit. CTD BaudConsole = 4800 Number of voltages exported = 4 Historic rate = 1 System UTC = Jul 22 2016 14:14:54 # nquan = 14 # nvalues = 179 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prdM: Pressure, Strain Gauge [db] # name 4 = t090C: Temperature [ITS-90, deg C] # name 5 = c0S/m: Conductivity [S/m] # name 6 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 7 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 8 = sbeox0V: Oxygen raw, SBE 43 [V] # name 9 = altM: Altimeter [m] # name 10 = dz/dtM: Descent Rate [m/s] # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 13 = flag: 0.000e+00 # interval = seconds: 0.25 # start_time = Jul 22 2016 14:11:26 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4700 # 20-Aug-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34740125e-003 # 6.38126201e-004 # 2.10201351e-005 # 1.77434915e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3321 # 20-Aug-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.95686996e+000 # 1.44763491e+000 # 9.44338138e-005 # 6.66701181e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1091 # 12-Feb-15 # 1.14033330e-001 # 1.92103558e-003 # 5.34017805e-012 # -9.16684969e+001 # 4.24482267e+001 # 1.35558195e+000 # 8.41923415e+006 # -7.48665510e+001 # 3.92791453e+000 # 1.00693415e+002 # 1.55017269e-002 # 0.00000000e+000 # 0.000000 # # # # # # 1483 # 17-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 5.7456e-001 # -0.5144 # -4.1278e-003 # 2.0586e-004 # -2.9344e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.2300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # # 1.30000000e+001 # # 0.0220 # # # # # # # # 15.000 # 0.000 # # # # # # 983DR # Feb 5 2014 # 20.8605 # -1.1890 # 0.250 # # # # datcnv_date = Oct 19 2016 11:50:17, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2016-56\RAW\CTD\2016-56-0008.hex P:\Crui se_Data_Processing\2016-56\Processing\doc\2016-56-ctd-1091.XMLCON # datcnv_ox_hysteresis_correction = no # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 41 END* Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 within 4 weeks of the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.16-10.04 ug/l. Average %CV for this cruise was 3.13% with 0 out of 26 duplicate pairs having a CV>15% and 0 out of 26 duplicate pairs having a CV>50%. Our average dataset %CV is 2.83 % for 2013 - 2015 so the overall quality of this dataset is very good. For details see worksheet “CV%” in file QF2016-56CHL*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 11 to 23 days after collection. There were no duplicates taken, so there is no precision analysis. For details see document QF2016-56SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. All analysis was performed on frozen samples. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2016-56nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity and Fluorescence data are nominal & unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated based on previous experience with this sensor because there was no DO calibration sampling. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. For details on the processing see the report: 2016-56_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.04) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- ---12--- 13 --14-- 15 --16-- --17-- 18 --19-- 20 ---21-- 22 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Salinity Fl Chloro Fl Phaeo- Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ :Bottle ag phyll: ag Pigmen e_ ag te ag te ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb ~o Extrac ~a t: plus_ ~t ~i ~p !mb en Wetlabs ved: lved: _rec er tt ted ct Extrac Nitrit ri ca ha !er ce SBE SBE ords le ed ted e te te te !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- -------- -- ------ -- ------ ------ -- ------ -- ------- -- *END OF HEADER 5 5 6.9 14.2536 22.2 4.644 25.7011 5.73 251.1 41 8 -99.0000 0 7.18 6 1.53 8.89 0 24.81 0 1.107 0 3 3 12.3 11.5506 41.0 1.201 28.1764 4.38 191.6 15 7 28.0748 0 1.39 6 0.75 19.80 0 37.05 0 1.835 0 2 2 22.3 10.4928 39.3 0.747 29.0575 4.00 174.5 41 6 -99.0000 0 0.43 6 0.62 24.33 0 43.84 0 2.131 0 1 1 239.3 9.6232 17.4 0.656 31.0005 3.39 148.0 41 5 31.0076 0 -99.00 0 -99.00 25.66 0 45.19 0 2.213 0