*2016/10/18 11:04:16.07 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/06/28 17:19:03.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 10 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 9D4A4DE4 NUMBER OF CHANNELS : 25 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 10 2 Bottle:Firing_Sequence n/a 1 10 3 Pressure decibar 1.659 160.091 4 Temperature:Secondary 'deg C (ITS90)' 9.3555 17.5458 5 Transmissivity %/metre 28.2 58.5 6 Fluorescence:URU:Seapoint mg/m^3 0.99E-01 3.606 7 PAR uE/m^2/sec 0 1581.214 8 PAR:Reference uE/m^2/sec 2249.693 2266.709 9 Salinity:T1:C1 PSS-78 25.289 30.7829 10 Oxygen:Dissolved:SBE mL/L 2.359 7.367 11 Oxygen:Dissolved:SBE umol/kg 102.9 322.5 12 Number_of_bin_records n/a 241 241 13 Sample_Number n/a 170 179 14 Temperature:Draw 'deg C (ITS90)' 9.6 17.8 15 Salinity:Bottle PSS-78 30.1315 30.1315 16 Flag:Salinity:Bottle ' ' 17 Oxygen:Dissolved mL/L 2.363 6.858 18 Oxygen:Dissolved umol/kg 103.054 300.2461 19 Flag:Oxygen:Dissolved ' ' 20 Nitrate_plus_Nitrite umol/L 0 29.42 21 Flag:Nitrate_plus_Nitrite ' ' 22 Silicate umol/L 9.61 77.96 23 Flag:Silicate ' ' 24 Phosphate umol/L 0.25 2.983 25 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 ' ' ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 6 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 8 F R4 3 18 -99 ' ' 6 F ' ' 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 8 F R4 3 25 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2016-46 AGENCY : 'WVL, Marine Environment and Habitat Science,' CONTINUED : ' Vancouver, B.C.' COUNTRY : Canada PROJECT : Baynes Sound Ecosystem Study SCIENTIST : Sutherland T. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Baynes Sound STATION : BS37 EVENT NUMBER : 101 LATITUDE : 49 35.94000 N ! (deg min) LONGITUDE : 124 39.32000 W ! (deg min) WATER DEPTH : 162 ALTIMETER (M) : 1.71 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4484 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4054 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3865 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 1252 pH ' ' 0692 PAR/Irradiance:Biospherical/Licor ' ' '4565 QSP200L4S' Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.23.1 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2016/10/12 15:57:48 2651 2651 CLEAN 5.2.1 2016/10/12 15:58:03 2651 2651 ADDSAMP 3.6 2016/10/12 16:02:24 2651 2651 BINAVE 4.2 2016/10/12 16:02:59 2651 11 MERGE 3.5 2016/10/18 10:39:14 11 11 CLEAN 5.2.1 2016/10/18 11:02:55 10 10 MERGEHDR 1.3 2016/10/18 11:03:15 10 10 CALIB 11.9 2016/10/18 11:03:32 10 10 SORT 3.6 2016/10/18 11:03:37 10 10 REMOVECH 8.2 2016/10/18 11:03:45 10 10 CHGUNITS 3.1.1 2016/10/18 11:03:52 10 10 CHGUNITS 3.1.1 2016/10/18 11:03:56 10 10 REORDER 1.3.1 2016/10/18 11:04:07 ? ? HDREDIT2 3.0.2 2016/10/18 11:04:16 ? ? $END $REMARKS -CLEAN functions: 2016/10/12 15:58:02 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2016-46\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2016/10/18 10:39:14 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2016-46\Processing\hydro\2016-46-0101.samavg Secondary file: P:\Cruise_Data_Processing\2016-46\Processing\hydro\2016-46-0101.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2016-46\Processing\hydro\2016-46-0101.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2016/10/18 10:38:49 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2016/10/18 11:02:55 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name -CALIB parameters: 2016/10/18 11:03:32 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-46\Processing\doc\2016-46-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 20 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1016800E+01 -SORT parameters: 2016/10/18 11:03:37 Sorted in ascending order of channel Pressure* -REMOVECH 2016/10/18 11:03:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2016/10/18 11:04:16 Applied edit header: P:\Cruise_Data_Processing\2016-46\Processing\doc\HYDRO\2016-46-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F11.3 ==> F7.2 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 15: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 17: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 20: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 22: Silicate [umol/L] Units: ==> umol/L Channel 24: Phosphate [umol/L] Units: ==> umol/L Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2016-47\2016-47-0101.hex Software Version Seasave V 7.23.1 Temperature SN = 4484 Conductivity SN = 1766 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jun 28 2016 10:21:18 NMEA Latitude = 49 35.94 N NMEA Longitude = 124 39.32 W NMEA UTC (Time) = Jun 28 2016 17:19:03 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 5 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Vector: 2016-47 Station: BS37 Depth: System UTC = Jun 28 2016 17:21:18 # nquan = 21 # nvalues = 2651 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = t090C: Temperature [ITS-90, deg C] # name 5 = t190C: Temperature, 2 [ITS-90, deg C] # name 6 = c0S/m: Conductivity [S/m] # name 7 = c1S/m: Conductivity, 2 [S/m] # name 8 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 9 = flSP: Fluorescence, Seapoint # name 10 = sbeox0V: Oxygen raw, SBE 43 [V] # name 11 = par: PAR/Irradiance, Biospherical/Licor # name 12 = spar: SPAR/Surface Irradiance # name 13 = ph: pH # name 14 = altM: Altimeter [m] # name 15 = dz/dtM: Descent Rate [m/s] # name 16 = pumps: Pump Status # name 17 = sal00: Salinity, Practical [PSU] # name 18 = sal11: Salinity, Practical, 2 [PSU] # name 19 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 20 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Jun 28 2016 17:19:03 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4484 # 18-Dec-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39931830e-003 # 6.40333195e-004 # 2.14332102e-005 # 1.81777421e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 20-Aug-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12823288e+000 # 4.88293788e-001 # -6.13168477e-004 # 5.30399930e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 17-Dec-14 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 1.00002764 # 0.67335 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4054 # 20-Aug-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38634996e-003 # 6.44413405e-004 # 2.32318430e-005 # 2.13707967e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 06-Feb-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02073624e+001 # 1.56180514e+000 # -2.18950789e-003 # 2.53511714e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 19-Dec-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.6004e-001 # -0.5129 # -3.1802e-003 # 1.7259e-004 # -3.0507e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.8700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3865 # # # 2 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 1252 # # 15.000 # 0.000 # # # # # # # # # 0692 # 12-Jan-16 # 4.6015 # 2.5353 # # # # # # 4565 QSP200L4S # 16-Mar-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # # # 20518 # 21-MAR-2016 # 1627.06600000 # 1.00000000 # # # # datcnv_date = Oct 12 2016 15:55:34, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2016-46\RAW\CTD\2016-46-0101.hex P:\Crui se_Data_Processing\2016-46\Processing\doc\2016-46-ctd.XMLCON # datcnv_ox_hysteresis_correction = no # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Comments from secondary file: P:\Cruise_Data_Processing\2016-46\Processing\hydro\2016-46-0101.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2016-46\Processing\hydro\2016-46-0101.oxy ------------------------------------------------------------------- Sample_Number 171: OXY-1: Copepod in sample. Sample_Number 173: OXY: Copepod in sample. Sample_Number 178: OXY and NUTS: Niskin bottle #9 failed to close so the bottle was reset, the CTD returned to the water and fired again at 5m. However, there was no wait for equilibration of CTD data and flushing of the Niskin bottle and the CTD DO value was way out of line in profile and compared to the DO sample. To see the sample data that were collected see documents QF2016-46NUTS.xlsx and QF2016-46OXY.xlsx. Analysis methods: ----------------- Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2016-46OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 13 to 18 days after collection. There were no duplicates taken, so there is no precision analysis. For details see document QF2017-46SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. All analysis was performed on frozen samples. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2016-46nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR, PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. Channel pH:SBE was removed from casts 95-104 due to sensor malfunction. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see the report: 2016-46_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0168) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- --8--- ---9---- --10-- --11- -12- -13- --14- ---15--- 16 ---17-- --18- 19 --20-- 21 --22-- 23 ---24-- 25 !Bo Bo Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: Refere :T1:C1 : n: er_o le_ ratur :Bottle ag Dissolv n: ag e_ ag te ag te ag !~u ~u Secondar vity URU: nce Dissol Disso ~bin Numb e: ~o ed Disso ~o plus_ ~t ~i ~p !mb en y Seapoin ved: lved: _rec er Draw tt lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed e te te te !-- -- ------ -------- ----- ------- ------ ------ -------- ------ ----- ---- ---- ----- -------- -- ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 10 10 1.7 17.5458 38.8 0.561 1581.2 2260.7 25.2890 6.55 287.5 241 179 17.8 -99.0000 0 6.537 286.7 0 0.00 0 9.61 0 0.250 0 9 9 5.1 16.4199 35.7 1.809 570.2 2266.7 26.2697 6.92 303.1 241 178 -99.0 -99.0000 0 -99.000 -99.0 9 -99.00 9 -99.00 9 -99.000 9 8 8 10.0 15.4439 28.2 3.606 145.0 2266.1 26.9026 7.37 322.5 241 177 15.2 -99.0000 0 6.858 300.2 0 0.22 0 13.62 0 0.356 0 7 7 25.2 11.2823 54.1 0.743 4.6 2249.7 28.7548 4.52 197.3 241 176 11.3 -99.0000 0 4.474 195.5 0 20.20 0 39.99 0 1.846 0 6 6 49.8 10.4597 58.5 0.149 0.1 2261.9 29.2085 4.17 182.3 241 175 10.5 -99.0000 0 4.109 179.4 0 25.28 0 47.11 0 2.231 0 5 5 74.8 9.3886 57.6 0.112 0.0 2261.8 29.6999 3.94 171.8 241 174 9.7 -99.0000 0 3.932 171.6 0 28.94 0 51.67 0 2.490 0 4 4 99.9 9.3555 57.8 0.101 0.0 2250.2 30.1157 3.92 171.1 241 173 9.6 30.1315 0 3.889 169.7 2 27.73 0 48.70 0 2.387 0 3 3 156.0 9.6875 41.1 0.104 0.0 2258.3 30.7460 2.36 102.9 241 172 9.9 -99.0000 0 2.363 103.1 0 29.22 0 77.96 0 2.983 0 2 2 157.9 9.7024 41.7 0.099 0.0 2257.0 30.7715 2.39 104.4 241 171 10.0 -99.0000 0 2.397 104.5 26 29.36 0 76.07 0 2.968 0 1 1 160.1 9.7091 39.0 0.105 0.0 2253.1 30.7829 2.38 103.7 241 170 9.9 -99.0000 0 2.504 109.2 0 29.42 0 75.73 0 2.936 0