*2017/02/17 17:09:56.53 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/10/31 16:42:16.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 91 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 44233AA3 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 8.0365 98.99963 2 Temperature:Primary 'deg C (ITS90)' 11.79536 12.10573 3 Fluorescence:URU:Wetlabs mg/m^3 0.4781111 0.8668 4 pH:SBE:Nominal n/a 8.259333 8.293 5 Salinity:T0:C0 PSS-78 31.87428 32.24763 6 Oxygen:Dissolved:SBE mL/L 5.586167 5.98425 7 Oxygen:Dissolved:SBE umol/kg 243.425 260.875 8 Number_of_bin_records n/a 4 13 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2016-40\Pro $END *ADMINISTRATION MISSION : 2016-40 AGENCY : PBS, Coastal & Oceanic Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : Basin & Coastal Scale Indicators SCIENTIST : Morris J. PLATFORM : Frosti *LOCATION GEOGRAPHIC AREA : WCVI STATION : VI09 EVENT NUMBER : 61 LATITUDE : 49 35.27500 N ! (deg min) LONGITUDE : 127 5.54400 W ! (deg min) WATER DEPTH : 108 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-25 SERIAL NUMBER : 0404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2095 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0482 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS SOFTWARE VERSION 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/02/15 11:56:39 3876 3876 CLEAN 5.2.2 2017/02/15 11:56:53 3876 3876 ADTIMCH 4.4 2017/02/15 11:59:35 3876 3876 MERGEHDR 1.3 2017/02/15 11:59:39 3876 3876 SHIFTDAT 3.4 2017/02/15 14:22:42 3876 3876 DELETE 6.3 2017/02/15 15:42:51 3876 766 CLIP 1.3 2017/02/15 15:42:59 766 760 CTDEDIT 5.2.3 2017/02/17 09:39:33 760 729 CALIB 11.9 2017/02/17 16:42:05 729 729 CLEAN 5.2.2 2017/02/17 16:48:07 729 729 CHGUNITS 3.1.1 2017/02/17 16:48:13 729 729 BINAVE 4.2 2017/02/17 17:09:45 729 91 REMOVECH 8.2 2017/02/17 17:09:50 91 91 HDREDIT2 3.1.1 2017/02/17 17:09:56 ? ? $END $REMARKS -CLEAN functions: 2017/02/15 11:56:53 Reset #RECS, MIN & MAX values in header. Delete Empty Channels: 0 deleted. Set event to last 4 characters of file name Set header Start and End times from the data. *FAILED* -The following ADTIMCH parameters were used. Add -17.00 hours to times in header file section -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 10.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 5 points) will be deleted. Drop rate applies in the range 10.00 to 89.27 dbars Sample interval (from FILE section of header) = 0.125 seconds. -The following CLIP parameters were used. Clip by Channel Range Clip Channel: Pressure:StrainGauge Min,Max = 7.700, 500.000 Time Not Available in File -CTDEDIT v5.2.3 2017/02/17 09:39:33 31 records were deleted in this editing session. 4 changes in channel Salinity:T0:C0 -CALIB parameters: 2017/02/17 16:42:05 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-40\Processing\doc\2016-40-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 5 Fluorescence:URU:Wetlabs:ECO- mg/m^3 10 0.2750000E+00 0.1000000E+01 -CLEAN functions: 2017/02/17 16:48:05 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Oxygen:Dissolved:SBE [mL/L] where channel Oxygen:Dissolved:SBE [mL/L] is in the range -1000 to -0.1E-03 8 data records in pad range. Set header Start and End times from the data. *FAILED* -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2017/02/17 17:09:50 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -HEADER EDITS: 2017/02/17 17:09:56 Applied edit header: P:\Cruise_Data_Processing\2016-40\Processing\doc\2016-40-hdr.txt Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = \\WATERPROPERTIES\Data\2016-40\2016-40-061.hex Software Version 1.59 Temperature SN = 2095 Conductivity SN = 1764 System UpLoad Time = Nov 01 2016 16:00:01 2016-40 CFV Frosti WCVI John Morris VI 09 ds SBE 25 CTD V 4.1c SN 0404 11/02/16 15:52:50.143 external pressure sensor, range = 10153 psia, tcval = 0 xtal = 9437232 clk = 32767.952 vmain = 10.7 iop = 196 vlith = 5.1 ncasts = 8 samples = 41531 free = 603442 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 1 11/01 09:42:16 smpls 4645 to 8520 nv = 3 avg = 1 stp = switch of S> # nquan = 11 # nvalues = 3876 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = c0S/m: Conductivity [S/m] # name 4 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 5 = ph: pH # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = dz/dtM: Descent Rate [m/s] # name 8 = sal00: Salinity, Practical [PSU] # name 9 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 10 = flag: flag # span 0 = 1, 3876 # span 1 = -1.075, 99.269 # span 2 = 11.7915, 12.1059 # span 3 = 0.349288, 3.704852 # span 4 = -0.2750, 124.0840 # span 5 = 7.944, 8.303 # span 6 = 0.0000, 2.0488 # span 7 = -2.808, 2.148 # span 8 = 2.4955, 32.2541 # span 9 = -2.0620, 19.6405 # span 10 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Nov 01 2016 09:42:16 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2095 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.13052507e-003 # 6.28715579e-004 # 2.08569538e-005 # 2.14210359e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15152248e+000 # 4.86957830e-001 # -5.49147277e-004 # 5.07581267e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0482 # 04-Jan-16 # 6.407317e+003 # -1.752122e+000 # -6.261155e-006 # 0.00000 # # # # # # 0852 # 18-Jan-16 # 4.6254 # 2.5297 # # # # # # 1176 # 19-Dec-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.5752e-001 # -0.5219 # -4.0682e-003 # 1.6157e-004 # -2.8213e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6900 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 02- Nov-2015 # 2.50000000e+001 # # 0.0110 # # # # datcnv_date = Feb 15 2017 11:45:38, 7.23.2 [datcnv_vars = 8] # datcnv_in = P:\Cruise_Data_Processing\2016-40\Processing\test\2016-40-061.hex P:\Cruise_Data_Processing\2016-40\Processing\doc\2016-40-ctd0404.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Feb 15 2017 11:53:47, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2016-40\Processing\convert\2016-40-0061 .cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 9 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Feb 15 2017 11:54:04, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2016-40\Processing\wfilter\2016-40-006 1.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Feb 15 2017 11:54:25, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2016-40\Processing\align\2016-40-0061.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Feb 15 2017 11:56:03, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2016-40\Processing\celltm\2016-40-0061.c nv P:\Cruise_Data_Processing\2016-40\Processing\doc\2016-40-ctd0404.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records that appear to be corrupted by shed wakes; salinity was cleaned. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Fluorescence, pH and Oxygen:Dissolved:SBE channels are nominal and unedited except that some records were removed in editing temperature and salinity. While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. There was no pH or dissolved oxygen calibration sampling. Salinity sampling was too limited to justify recalibration as samples all came from near the surface and at somewhat variable depth. However, the comparison of CTD salinity with bottle salinity suggests that the CTD is reading within 0.005psu. Comparison of fluorescence with extracted chlorophyll samples was used to help determine a suitable correction to the offset for the fluorometer as there were many negative fluorescence; that correction removed the many negative values found using the offset from the configuration file. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data are available. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see the report: 2016-40-proc.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------------------- -------- ---- ------ ------------ Fluorescence:URU:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0.275 1) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 8.0 12.0916 0.817 8.293 31.8743 5.98 260.9 4 9.1 12.0857 0.783 8.290 31.8745 5.98 260.8 11 9.9 12.0851 0.785 8.289 31.8751 5.97 260.5 10 11.1 12.0881 0.814 8.291 31.8773 5.96 259.8 6 12.0 12.0905 0.763 8.288 31.8787 5.97 260.4 10 12.9 12.0918 0.867 8.288 31.8797 5.98 260.5 10 14.0 12.0939 0.794 8.288 31.8801 5.98 260.7 4 15.0 12.0955 0.760 8.288 31.8806 5.98 260.5 8 16.1 12.0965 0.753 8.288 31.8815 5.96 259.7 6 17.1 12.0996 0.756 8.287 31.8871 5.93 258.6 9 18.0 12.0997 0.745 8.288 31.8887 5.92 258.2 5 19.0 12.1024 0.660 8.288 31.8917 5.92 258.3 13 19.9 12.1048 0.698 8.285 31.8947 5.91 257.7 7 21.0 12.1057 0.748 8.285 31.8988 5.90 257.1 6 22.0 12.1041 0.721 8.288 31.9006 5.91 257.7 5 23.1 12.1035 0.677 8.288 31.9006 5.91 257.8 6 23.9 12.1031 0.681 8.287 31.9004 5.91 257.5 7 25.0 12.1019 0.687 8.285 31.9004 5.91 257.6 8 26.0 12.1016 0.651 8.287 31.9007 5.91 257.8 6 27.0 12.1013 0.687 8.287 31.9010 5.91 257.8 6 28.0 12.1007 0.656 8.285 31.9011 5.92 258.0 6 29.0 12.1002 0.634 8.287 31.9017 5.92 258.3 12 30.0 12.1000 0.664 8.288 31.9024 5.92 258.1 8 31.1 12.0989 0.676 8.287 31.9052 5.91 257.7 7 32.0 12.0961 0.708 8.284 31.9120 5.90 257.0 5 33.0 12.0973 0.728 8.284 31.9147 5.89 256.7 6 33.9 12.0983 0.712 8.283 31.9157 5.88 256.3 6 35.0 12.0995 0.632 8.283 31.9164 5.87 255.9 10 36.1 12.0998 0.651 8.283 31.9165 5.86 255.4 6 37.0 12.0999 0.611 8.283 31.9176 5.85 255.1 5 38.0 12.0971 0.605 8.283 31.9237 5.84 254.7 6 39.0 12.0969 0.687 8.283 31.9251 5.84 254.6 8 39.7 12.0961 0.580 8.283 31.9264 5.85 255.1 7 42.0 12.0957 0.580 8.283 31.9276 5.85 254.9 9 43.1 12.0947 0.626 8.283 31.9295 5.83 254.3 6 44.1 12.0902 0.588 8.282 31.9386 5.83 254.1 11 45.0 12.0901 0.590 8.282 31.9402 5.83 254.3 6 46.0 12.0904 0.580 8.280 31.9411 5.84 254.5 8 47.1 12.0908 0.641 8.281 31.9423 5.84 254.7 8 48.1 12.0914 0.599 8.281 31.9440 5.84 254.5 10 49.0 12.0862 0.622 8.280 31.9551 5.82 253.6 8 49.9 12.0732 0.603 8.279 31.9626 5.82 253.7 12 50.9 12.0684 0.607 8.279 31.9655 5.80 252.8 9 51.9 12.0627 0.597 8.279 31.9699 5.80 252.9 11 53.1 12.0620 0.580 8.279 31.9701 5.81 253.2 9 54.0 12.0635 0.580 8.279 31.9722 5.81 253.1 5 54.9 12.0669 0.598 8.279 31.9798 5.80 252.9 7 56.0 12.0767 0.602 8.279 31.9903 5.79 252.4 11 57.1 12.0805 0.552 8.279 31.9968 5.79 252.2 11 58.1 12.0816 0.546 8.279 32.0060 5.79 252.3 9 59.0 12.0827 0.555 8.279 32.0221 5.78 251.9 6 60.0 12.0830 0.550 8.279 32.0255 5.78 251.9 9 60.9 12.0826 0.500 8.280 32.0314 5.77 251.5 8 62.0 12.0826 0.509 8.280 32.0342 5.76 251.2 6 63.0 12.0803 0.528 8.279 32.0376 5.76 251.2 7 64.1 12.0779 0.523 8.279 32.0420 5.76 251.2 8 65.0 12.0737 0.488 8.278 32.0449 5.77 251.5 9 65.9 12.0681 0.529 8.279 32.0460 5.76 251.3 9 67.0 12.0620 0.531 8.279 32.0469 5.75 250.8 5 68.0 12.0602 0.556 8.279 32.0482 5.75 250.8 5 69.1 12.0572 0.498 8.277 32.0503 5.75 250.8 6 70.0 12.0521 0.478 8.277 32.0513 5.75 250.7 9 71.0 12.0396 0.515 8.274 32.0532 5.75 250.5 7 72.1 12.0296 0.513 8.274 32.0549 5.74 250.3 5 72.9 12.0266 0.484 8.274 32.0558 5.73 249.9 8 74.0 12.0222 0.488 8.273 32.0557 5.73 249.8 5 74.9 12.0201 0.488 8.273 32.0557 5.73 249.8 8 75.9 12.0194 0.491 8.273 32.0558 5.73 249.7 9 77.0 12.0183 0.488 8.274 32.0557 5.73 249.9 5 78.1 12.0175 0.514 8.273 32.0555 5.73 249.9 6 79.1 12.0160 0.510 8.271 32.0551 5.74 250.0 7 79.9 12.0129 0.524 8.273 32.0552 5.73 249.9 6 81.0 12.0096 0.516 8.272 32.0554 5.73 249.7 11 81.9 12.0084 0.483 8.273 32.0554 5.73 249.7 13 83.0 12.0049 0.499 8.270 32.0562 5.74 250.0 11 84.0 12.0030 0.493 8.270 32.0572 5.72 249.4 12 85.0 11.9985 0.529 8.271 32.0584 5.72 249.2 6 86.0 11.9963 0.553 8.270 32.0605 5.71 248.8 9 87.0 11.9798 0.533 8.270 32.0738 5.70 248.6 9 88.0 11.9737 0.512 8.268 32.0823 5.70 248.2 9 89.1 11.9714 0.510 8.269 32.0840 5.70 248.3 7 89.9 11.9699 0.505 8.269 32.0860 5.70 248.6 11 90.9 11.9612 0.516 8.267 32.0906 5.70 248.3 12 92.0 11.9636 0.510 8.268 32.0990 5.67 247.2 10 93.0 11.9476 0.538 8.264 32.1088 5.63 245.3 10 94.0 11.8717 0.554 8.261 32.1312 5.60 244.2 7 95.0 11.8262 0.522 8.259 32.1535 5.59 243.4 12 96.0 11.7977 0.516 8.260 32.1831 5.59 243.4 9 96.9 11.7954 0.524 8.261 32.2095 5.59 243.7 12 98.0 11.8010 0.512 8.263 32.2320 5.60 244.1 9 99.0 11.8040 0.534 8.267 32.2476 5.60 244.1 8