*2016/09/27 15:09:23.05 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2016/08/19 18:30:32.000 TIME INCREMENT : 0 0 0 0.125 0 ! (day hr min sec ms) NUMBER OF RECORDS : 59 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 63C22C7E NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 1.92 59.882 2 Temperature:Primary 'deg C (ITS90)' 10.2919 14.4364 3 Fluorescence:URU:Wetlabs mg/m^3 0.366 2.136 4 pH:SBE:Nominal n/a 7.554 7.68 5 Salinity:T0:C0 PSS-78 28.6017 30.7413 6 Oxygen:Dissolved:SBE mL/L 2.725 5.082 7 Oxygen:Dissolved:SBE umol/kg 118.8492 222.1734 8 Number_of_bin_records n/a 3 8 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2016-31\Pro $END *ADMINISTRATION MISSION : 2016-31 AGENCY : 'PBS, Salmon and Freshwater Ecosystems Division,' CONTINUED : ' Nanaimo, B.C.' COUNTRY : Canada PROJECT : Cowichan Purse Seine SCIENTIST : Neville C. PLATFORM : Ocean Venture *LOCATION GEOGRAPHIC AREA : Cowichan Bay STATION : Set 60 EVENT NUMBER : 121 LATITUDE : 48 44.50000 N ! (deg min) LONGITUDE : 123 34.97700 W ! (deg min) WATER DEPTH : 63 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-25 SERIAL NUMBER : 0404 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2095 Conductivity ' ' 1764 'Pressure:Strain Gauge' ' ' 0482 pH ' ' 0852 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' FLRTD-4185 $END $REMARKS SOFTWARE VERSION 1.59 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2016/09/27 09:33:13 1900 1900 CLEAN 5.2.1 2016/09/27 09:34:43 1900 1900 ADTIMCH 4.4 2016/09/27 09:37:03 1900 1900 MERGEHDR 1.3 2016/09/27 09:37:25 1900 1900 SHIFTDAT 3.2a 2016/09/27 09:42:54 ? ? DELETE 6.1 2016/09/27 09:43:50 1900 308 CLIP 1.3 2016/09/27 10:03:02 308 307 CTDEDIT 5.2.1 2016/09/27 11:05:18 307 302 CLEAN 5.2.1 2016/09/27 11:33:52 302 302 CLEAN 5.2.1 2016/09/27 11:39:13 302 302 BINAVE 4.2 2016/09/27 14:30:28 302 59 REMOVECH 8.2 2016/09/27 14:32:33 59 59 CHGUNITS 3.1.1 2016/09/27 14:57:23 59 59 REORDER 1.3.1 2016/09/27 14:59:45 ? ? HDREDIT2 3.0.2 2016/09/27 15:09:23 ? ? $END $REMARKS -CLEAN functions: 2016/09/27 09:34:37 20 Reset #RECS, MIN & MAX values in header. Interpolation by Record Number, in All Channels Set event to last 4 characters of file name -The following ADTIMCH parameters were used. Add -17.00 hours to times in header file section -The following SHIFT parameters were used. Shift Channel: pH:SBE [pH Units] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 5.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure NOT filtered. Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 5 points) will be deleted. Drop rate applies in the range 10.00 to -20.33 dbars Sample interval (from FILE section of header) = 0.125 seconds. -The following CLIP parameters were used. Clip by Channel Range Clip Channel: Pressure:StrainGauge Min,Max = 1.500, 500000.000 Time Not Available in File -CTDEDIT v5.2.1 2016/09/27 11:05:18 5 records were deleted in this editing session. No data values were changed. -CLEAN functions: 2016/09/27 11:33:51 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Fluorescence:Wetlabs:ECO-AFL [mg/m^3] where channel Fluorescence:Wetlabs:ECO-AFL [mg/m^3] is in the range -5 to -0. 26 data records in pad range. -CLEAN functions: 2016/09/27 11:39:12 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Oxygen:Dissolved:SBE [mL/L] where channel Oxygen:Dissolved:SBE [mL/L] is in the range -50 to -0.1E-03 27 data records in pad range. -The following BINAVE parameters were used: Bin channel = Press* Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2016/09/27 14:32:33 The following CHANNEL(S) were removed: Scan_Number Conductivity:Primary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temp* Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2016/09/27 15:09:23 Applied edit header: P:\Cruise_Data_Processing\2016-31\Processing\doc\2016-31-HDR-0404.TXT Channel 1: Pressure [decibar] Name: Pressure:StrainGauge ==> Pressure Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS SBE HEADER Sea-Bird SBE25 Data File: FileName = C:\Data\2016-31\Aug19-21\2016-31-001.hex Software Version 1.59 Temperature SN = 2095 Conductivity SN = 1764 System UpLoad Time = Aug 23 2016 13:32:14 IOS 2016-31 SOG 2016-06 Cowichan Bay Purse Seine F/V Ocean Venture ds SBE 25 CTD V 4.1c SN 0404 08/24/16 13:28:22.042 external pressure sensor, range = 10153 psia, tcval = 0 xtal = 9437232 clk = 32768.217 vmain = 13.2 iop = 175 vlith = 5.4 ncasts = 8 samples = 17332 free = 627641 lwait = 0 msec CTD configuration: number of scans averaged = 1, data stored at 8 scans per second real time data transmitted at 8 scans per second minimum conductivity frequency for pump turn on = 3100 pump delay = 45 seconds battery type = ALKALINE 3 external voltages sampled stored voltage # 0 = external voltage 0 stored voltage # 1 = external voltage 4 stored voltage # 2 = external voltage 5 S> dh cast 1 08/20 11:30:32 smpls 1503 to 3402 nv = 3 avg = 1 stp = switch of S> # nquan = 11 # nvalues = 1900 # units = specified # name 0 = scan: Scan Count # name 1 = prSM: Pressure, Strain Gauge [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = c0S/m: Conductivity [S/m] # name 4 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 5 = sbeox0V: Oxygen raw, SBE 43 [V] # name 6 = ph: pH # name 7 = dz/dtM: Descent Rate [m/s] # name 8 = sal00: Salinity, Practical [PSU] # name 9 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 1 # name 10 = flag: flag # span 0 = 1, 1900 # span 1 = 0.165, 60.087 # span 2 = 10.2713, 22.2517 # span 3 = 0.094014, 3.731800 # span 4 = -0.2750, 124.1145 # span 5 = 0.0000, 1.8767 # span 6 = 5.568, 7.728 # span 7 = -2.313, 2.643 # span 8 = 0.4911, 30.7598 # span 9 = -2.1224, 23.4180 # span 10 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.125 # start_time = Aug 20 2016 11:30:32 [Instrument's time stamp, header] # bad_flag = -9.990e-29 # # # # # 2095 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.13052507e-003 # 6.28715579e-004 # 2.08569538e-005 # 2.14210359e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15152248e+000 # 4.86957830e-001 # -5.49147277e-004 # 5.07581267e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0482 # 04-Jan-16 # 6.407317e+003 # -1.752122e+000 # -6.261155e-006 # 0.00000 # # # # # # 0852 # 18-Jan-16 # 4.6254 # 2.5297 # # # # # # 1176 # 19-Dec-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.5752e-001 # -0.5219 # -4.0682e-003 # 1.6157e-004 # -2.8213e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6900 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # FLRTD-4185 # 02- Nov-2015 # 2.50000000e+001 # # 0.0110 # # # # datcnv_date = Sep 23 2016 16:34:47, 7.23.2 [datcnv_vars = 8] # datcnv_in = P:\Cruise_Data_Processing\2016-31\RAW\CTD\CTD_0404\2016-31-0121.he x P:\Cruise_Data_Processing\2016-31\Processing\doc\2016-31-ctd0404.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wfilter_date = Sep 27 2016 08:55:40, 7.23.2 # wfilter_in = P:\Cruise_Data_Processing\2016-31\Processing\convert\404\2016-31- 0121.cnv # wfilter_excl_bad_scans = yes # wfilter_action prSM = cosine, 5 # wfilter_action t090C = cosine, 5 # wfilter_action c0S/m = cosine, 5 # alignctd_date = Sep 27 2016 09:28:12, 7.23.2 # alignctd_in = P:\Cruise_Data_Processing\2016-31\Processing\wfilter\404\2016-31 -0121.cnv # alignctd_adv = sbeox0V 2.500 # celltm_date = Sep 27 2016 09:28:35, 7.23.2 # celltm_in = P:\Cruise_Data_Processing\2016-31\Processing\align\2016-31-0121.cn v # celltm_alpha = 0.0400, 0.0000 # celltm_tau = 8.0000, 0.0000 # celltm_temp_sensor_use_for_cond = primary, # Derive_date = Sep 27 2016 09:30:06, 7.23.2 [derive_vars = 2] # Derive_in = P:\Cruise_Data_Processing\2016-31\Processing\celltm\404\2016-31-01 21.cnv P:\Cruise_Data_Processing\2016-31\Processing\doc\2016-31-ctd0404.xmlcon # derive_time_window_docdt = seconds: 1 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records from near the top of the cast. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Fluorescence and Oxygen:Dissolved:SBE channels are nominal and unedited except that some records were removed in editing temperature and salinity. There was no salinity or dissolved oxygen calibration sampling and no other information available upon which to base a recalibration. Pumped channels were removed from casts #91 to 110 because the data were bad likely due to clogged plumbing. The quality of data from CTD #0404 is lower than usual for this cruise due to low resolution in the pressure. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see the report: 2016-31-proc.doc. --------------------------------------------------------------------------------- !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 1.9 14.4364 1.465 7.554 28.6017 5.08 222.2 6 3.0 14.4351 1.587 7.586 28.6025 4.87 212.7 3 4.0 14.1996 1.623 7.608 28.7024 4.64 202.9 6 5.0 13.8960 1.661 7.621 28.8224 4.54 198.6 5 6.0 13.6075 1.831 7.627 28.9358 4.54 198.2 4 6.9 13.6021 2.136 7.636 28.9363 4.50 196.5 6 8.0 13.4790 1.969 7.643 28.9862 4.45 194.2 4 8.9 13.4448 1.811 7.646 29.0001 4.40 192.4 3 9.9 13.3154 1.673 7.652 29.0531 4.36 190.5 5 11.1 13.2575 1.648 7.655 29.0764 4.35 190.2 5 11.9 13.2392 1.562 7.658 29.0848 4.34 189.4 6 13.0 13.2022 1.483 7.661 29.1000 4.32 188.7 5 13.8 13.1708 1.495 7.663 29.1129 4.30 187.9 5 15.0 13.1326 1.487 7.665 29.1274 4.30 187.8 4 16.2 13.1512 1.465 7.668 29.1212 4.29 187.6 4 17.0 13.1393 1.485 7.670 29.1275 4.30 188.1 3 18.1 13.1488 1.526 7.674 29.1253 4.31 188.3 7 19.0 13.1539 1.556 7.675 29.1247 4.30 187.8 6 20.0 13.1378 1.556 7.676 29.1314 4.29 187.2 5 21.1 13.1500 1.549 7.678 29.1273 4.23 184.9 4 22.0 13.0996 1.526 7.678 29.1473 4.15 181.4 3 22.9 13.0047 1.526 7.680 29.1840 4.14 180.9 3 24.0 12.9101 1.587 7.680 29.2202 4.12 179.9 5 25.1 12.8488 1.562 7.679 29.2453 4.08 178.1 6 26.1 12.7808 1.427 7.678 29.2772 4.00 174.8 4 27.1 12.6466 1.465 7.676 29.3389 3.97 173.4 6 28.0 12.6006 1.450 7.674 29.3603 3.95 172.4 4 29.0 12.5892 1.396 7.671 29.3662 3.91 170.8 4 30.1 12.5202 1.245 7.670 29.3996 3.88 169.5 5 31.0 12.4645 1.233 7.666 29.4266 3.87 168.8 5 32.0 12.4255 1.206 7.667 29.4451 3.82 166.8 4 33.0 12.3763 1.165 7.663 29.4682 3.76 164.1 6 34.0 12.2307 1.225 7.659 29.5298 3.74 163.1 7 34.9 12.1887 1.134 7.657 29.5461 3.71 162.2 6 35.9 12.1401 1.013 7.654 29.5645 3.72 162.3 5 37.0 12.1297 1.007 7.651 29.5685 3.72 162.4 4 38.0 12.1101 0.892 7.648 29.5759 3.69 161.1 4 38.9 12.0824 0.842 7.646 29.5859 3.67 160.1 5 39.9 12.0389 0.794 7.644 29.6057 3.62 157.9 6 40.9 11.9876 0.769 7.640 29.6270 3.55 155.0 5 42.0 11.9499 0.689 7.637 29.6384 3.50 152.8 5 43.0 11.9186 0.645 7.637 29.6490 3.47 151.6 7 44.0 11.8281 0.615 7.631 29.6997 3.42 149.5 6 44.9 11.7820 0.561 7.629 29.7277 3.34 145.6 5 45.8 11.5944 0.500 7.627 29.8498 3.24 141.3 8 47.0 11.4527 0.499 7.621 29.9466 3.25 141.8 6 48.1 11.4226 0.488 7.614 29.9718 3.26 142.3 4 49.1 11.3376 0.514 7.611 30.0276 3.19 139.4 6 49.8 11.2323 0.496 7.609 30.0951 3.15 137.3 4 50.9 11.1279 0.519 7.604 30.1490 3.12 136.2 8 52.1 11.0445 0.519 7.599 30.1898 3.06 133.7 6 53.1 10.9648 0.519 7.594 30.2456 2.99 130.4 5 54.0 10.7866 0.519 7.590 30.3280 2.92 127.2 5 55.0 10.6551 0.500 7.583 30.4455 2.85 124.2 8 56.1 10.5224 0.476 7.576 30.5478 2.82 123.0 5 57.0 10.4753 0.482 7.572 30.5713 2.81 122.4 5 58.0 10.4662 0.458 7.568 30.5768 2.78 121.3 4 58.9 10.3951 0.397 7.563 30.6470 2.75 119.8 7 59.9 10.2919 0.366 7.556 30.7413 2.73 118.8 5