*2016/11/03 16:58:13.52 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/07/11 11:58:01.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 25DF8714 NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 11 2 Bottle:Firing_Sequence n/a 1 11 3 Pressure decibar 2.407 61.8 4 Temperature:Secondary 'deg C (ITS90)' 8.5922 12.833 5 Transmissivity %/metre 23.2 56.2 6 Fluorescence:URU:Seapoint mg/m^3 0.279 5.123 7 Salinity:T1:C1 PSS-78 30.958 32.5555 8 Oxygen:Dissolved:SBE mL/L 4.322 6.871 9 Oxygen:Dissolved:SBE umol/kg 188.2 299.8 10 Number_of_bin_records n/a 41 241 11 Sample_Number n/a 430 440 12 Temperature:Draw 'deg C (ITS90)' 9 12.9 13 Salinity:Bottle PSS-78 30.977 32.5472 14 Flag:Salinity:Bottle ' ' 15 Oxygen:Dissolved mL/L 4.298 6.908 16 Oxygen:Dissolved umol/kg 187.158 301.3614 17 Flag:Oxygen:Dissolved ' ' 18 Nitrate_plus_Nitrite umol/L 0.43 19.66 19 Flag:Nitrate_plus_Nitrite ' ' 20 Silicate umol/L 1.77 30.65 21 Flag:Silicate ' ' 22 Phosphate umol/L 0.287 1.447 23 Flag:Phosphate ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 6 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 8 F R4 3 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2016-12 AGENCY : IOS, Ocean Sciences Division, Sidney COUNTRY : Canada PROJECT : WCVI Moorings & WCTSS SCIENTIST : Spear D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : B.C. Coast STATION : CS06 EVENT NUMBER : 83 LATITUDE : 51 0.14000 N ! (deg min) LONGITUDE : 128 49.92000 W ! (deg min) WATER DEPTH : 67 ALTIMETER (M) : 5.25 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2663 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 0997 Fluorometer:Seapoint ' ' 3640 'Transmissometer:WET Labs C-Star' ' ' 1185DR Altimeter ' ' 62354 PAR/Irradiance:Biospherical/Licor ' ' 70613 PAR/Irradiance:Biospherical/Licor:2 ' ' 4615 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.23.2 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5 2016/10/24 15:18:02 1665 1665 CLEAN 5.2.1 2016/10/24 15:25:11 1665 1665 ADDSAMP 3.6 2016/10/26 17:00:08 1665 1665 BINAVE 4.2 2016/10/26 17:01:04 1665 11 MERGE 3.5 2016/11/03 11:49:36 11 11 CLEAN 5.2.1 2016/11/03 16:55:58 11 11 CALIB 11.9 2016/11/03 16:56:02 11 11 SORT 3.6 2016/11/03 16:56:17 11 11 REMOVECH 8.2 2016/11/03 16:56:26 11 11 CHGUNITS 3.1.1 2016/11/03 16:57:21 11 11 CHGUNITS 3.1.1 2016/11/03 16:57:53 11 11 REORDER 1.3.1 2016/11/03 16:58:07 ? ? HDREDIT2 3.0.2 2016/11/03 16:58:13 ? ? $END $REMARKS -CLEAN functions: 2016/10/24 15:24:44 20 Reset #RECS, MIN & MAX values in header. Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2016-12\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2016/11/03 11:49:36 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2016-12\Processing\hydro\2016-12-0083.samavg Secondary file: P:\Cruise_Data_Processing\2016-12\Processing\hydro\2016-12-0083.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2016-12\Processing\hydro\2016-12-0083.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2016/11/03 11:49:12 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2016/11/03 16:55:56 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name -CALIB parameters: 2016/11/03 16:56:02 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-12\Processing\doc\2016-12-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Oxygen:Dissolved:SBE mL/L 10 0.3240000E-01 0.1025600E+01 -SORT parameters: 2016/11/03 16:56:17 Sorted in ascending order of channel Pressure* -REMOVECH 2016/11/03 16:56:26 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2016/11/03 16:58:13 Applied edit header: P:\Cruise_Data_Processing\2016-12\Processing\doc\hydro\2016-12-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F11.3 ==> F7.2 Channel 12: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 13: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 20: Silicate [umol/L] Units: ==> umol/L Channel 22: Phosphate [umol/L] Units: ==> umol/L $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2016-12\2016-12-0083.hex Software Version Seasave V 7.23.2 Temperature SN = 2106 Conductivity SN = 2280 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 11 2016 11:59:08 NMEA Latitude = 51 00.14 N NMEA Longitude = 128 49.92 W NMEA UTC (Time) = Jul 11 2016 11:58:01 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Mission: 2016-12 Ship: J.P. Tully Station: CS06 Depth: 67 System UTC = Jul 11 2016 11:59:08 # nquan = 19 # nvalues = 1665 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = t090C: Temperature [ITS-90, deg C] # name 5 = t190C: Temperature, 2 [ITS-90, deg C] # name 6 = c0S/m: Conductivity [S/m] # name 7 = c1S/m: Conductivity, 2 [S/m] # name 8 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 9 = flSP: Fluorescence, Seapoint # name 10 = sbeox0V: Oxygen raw, SBE 43 [V] # name 11 = par: PAR/Irradiance, Biospherical/Licor # name 12 = altM: Altimeter [m] # name 13 = dz/dtM: Descent Rate [m/s] # name 14 = pumps: Pump Status # name 15 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 16 = sal00: Salinity, Practical [PSU] # name 17 = sal11: Salinity, Practical, 2 [PSU] # name 18 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Jul 11 2016 11:58:01 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 17-Dec-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14703785e-003 # 6.31044927e-004 # 2.13121431e-005 # 2.18594910e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2280 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00904009e+001 # 1.35149315e+000 # -1.84720682e-003 # 1.90856808e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0443 # 17-Dec-14 # -4.435292e+004 # -1.635794e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993627e+001 # -3.271008e-004 # 3.759160e-006 # 1.565300e-009 # 0.99991613 # -1.00000 # 0.000000e+000 # 1.282462e-002 # -8.599824e+000 # # # # # # 2663 # 15-Jan-15 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36565531e-003 # 6.42337654e-004 # 2.40578991e-005 # 2.42263656e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2754 # 19-Dec-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.05920237e+001 # 1.61356129e+000 # -1.94911294e-003 # 2.41671700e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0997 # 17-Jan-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.0785e-001 # -0.6967 # -3.5082e-003 # 1.2934e-004 # -1.8411e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.6200 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3640 # # # 2 # 0.000 # # # # # # 1185DR # APR 27. 2016 # 19.3479 # -1.1028 # 0.250 # # # # # # # # # 62354 # # 15.000 # 0.000 # # # # # # # # # 70613 # 03/21/16 # 1.00000000 # 0.00000000 # 11876484560.57000000 # 1.00000000 # -0.08460000 # # # # # # 4615 # 16-Mar-2011 # 1.00000000 # 0.00000000 # 3367003367.00000000 # 1.00000000 # -0.40341896 # # # # datcnv_date = Oct 24 2016 14:20:21, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2016-12\RAW\CTD\2016-12-0083.hex P:\Crui se_Data_Processing\2016-12\Processing\doc\2016-12-ctd.xmlcon # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Comments from secondary file: P:\Cruise_Data_Processing\2016-12\Processing\hydro\2016-12-0083.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2016-12\Processing\hydro\2016-12-0083.sal ------------------------------------------------------------------- Sample_Number 431: SAL: Many salt crystals around insert. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 with 4 weeks of the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.20-10.73 ug/l. Average %CV for this cruise was 3.65% with 2 out of 79 duplicate pairs having a CV>15% and 0 out of 79 pairs having a CV>50%. Our average dataset %CV is 2.83 % for 2013 - 2015 so the overall quality of this dataset is excellent. For details see worksheet “CV%” in file QF2016-12CHL*.xls. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2016-12OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 13 to 23 days after collection. For details see document QF2016-12SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. All analysis was performed on frozen samples. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2016-12nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2016-12_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.324E-01 1.0256) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- --12- ---13--- 14 ---15-- --16- 17 --18-- 19 --20-- 21 ---22-- 23 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: :T1:C1 : n: er_o le_ ratur :Bottle ag Dissolv n: ag e_ ag te ag te ag !~u ~u Secondar vity URU: Dissol Disso ~bin Numb e: ~o ed Disso ~o plus_ ~t ~i ~p !mb en y Seapoin ved: lved: _rec er Draw tt lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed e te te te !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- ----- -------- -- ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 9 9 2.4 12.6614 23.8 5.123 31.0212 6.84 298.3 41 438 12.9 -99.0000 0 6.908 301.4 0 0.43 0 1.77 0 0.287 0 11 11 2.5 12.8330 23.2 5.088 30.9580 6.87 299.8 241 440 -99.0 -99.0000 0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 10 10 2.6 12.6618 23.7 4.905 31.0206 6.83 297.8 45 439 -99.0 30.9770 0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 8 8 9.6 11.9334 32.2 4.262 31.2799 6.48 282.5 241 437 12.1 -99.0000 0 6.526 284.6 6 3.05 6 6.30 6 0.441 6 7 7 19.2 10.7518 46.5 2.137 31.7051 5.66 246.6 241 436 10.9 -99.0000 0 5.694 248.2 0 8.66 0 14.89 0 0.899 0 5 5 29.4 10.3573 50.3 1.353 31.8282 5.39 234.9 42 434 10.5 -99.0000 0 5.416 236.0 0 10.71 0 17.91 0 0.931 0 6 6 29.5 10.3539 46.7 1.362 31.8270 5.37 234.2 241 435 -99.0 31.8488 0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 4 4 49.5 9.0852 51.8 0.583 32.3109 4.61 201.0 241 433 9.3 -99.0000 0 4.634 201.8 0 17.04 0 26.18 0 1.321 0 3 3 61.7 8.5948 56.1 0.338 32.5534 4.32 188.2 241 432 9.0 -99.0000 0 4.298 187.2 0 19.66 0 30.65 0 1.447 0 2 2 61.7 8.5948 56.2 0.330 32.5534 4.33 188.5 42 431 -99.0 32.5472 3 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 1 1 61.8 8.5922 55.3 0.279 32.5555 4.33 188.7 49 430 -99.0 -99.0000 0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0