*2021/11/25 15:54:53.41 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2016/09/24 11:05:06.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : C305144E NUMBER OF CHANNELS : 51 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 109 125 2 Bottle_Number n/a 1 17 3 Bottle:Firing_Sequence n/a 1 17 4 Pressure decibar 1.9 317.2 5 Temperature:Secondary 'deg C (ITS90)' 9.5767 14.5277 6 Transmissivity %/metre 29.1 57.7 7 Fluorescence:URU:Seapoint mg/m^3 0.78E-01 4.744 8 PAR uE/m^2/sec 0 5.9 9 PAR:Reference uE/m^2/sec 15.9 15.9 10 Salinity:T1:C1 PSS-78 27.8714 31.2919 11 Oxygen:Dissolved:SBE mL/L 2.82 6.26 12 Oxygen:Dissolved:SBE umol/kg 123 273.9 13 Number_of_bin_records n/a 41 241 14 Salinity:Bottle PSS-78 31.281 31.281 15 Flag:Salinity:Bottle ' ' 16 Nitrate_plus_Nitrite umol/L 3.55 29.05 17 Flag:Nitrate_plus_Nitrite ' ' 18 Silicate umol/L 33.73 57.58 19 Flag:Silicate ' ' 20 Phosphate umol/L 0.722 2.446 21 Flag:Phosphate ' ' 22 Chlorophyll:Extracted mg/m^3 0.4 4.71 23 Flag:Chlorophyll:Extracted ' ' 24 Phaeo-Pigment:Extracted mg/m^3 0.67 1.7 25 HPLC:Chl-c3 mg/m^3 0.172 0.172 26 HPLC:Chlide-a mg/m^3 0 0 27 HPLC:MgDVP mg/m^3 0.61E-01 0.61E-01 28 HPLC:Chl-c2 mg/m^3 0.351 0.351 29 HPLC:Chl-c1 mg/m^3 0.11E-01 0.11E-01 30 HPLC:Me-chlide mg/m^3 0 0 31 HPLC:Peri mg/m^3 0.76E-01 0.76E-01 32 HPLC:Pheide-a mg/m^3 0 0 33 HPLC:But-fuco mg/m^3 0.8E-01 0.8E-01 34 HPLC:Fuco mg/m^3 1.23 1.23 35 HPLC:Neo mg/m^3 0.115 0.115 36 HPLC:Pras mg/m^3 0.197 0.197 37 HPLC:Viola mg/m^3 0.56E-01 0.56E-01 38 HPLC:Hex-fuco mg/m^3 0.76E-01 0.76E-01 39 HPLC:Diadino mg/m^3 0.96E-01 0.96E-01 40 HPLC:Allo mg/m^3 0.243 0.243 41 HPLC:Diato mg/m^3 0 0 42 HPLC:Zea mg/m^3 0.115 0.115 43 HPLC:Lut mg/m^3 0 0 44 HPLC:Chl-b mg/m^3 0.821 0.821 45 HPLC:C2mgdg mg/m^3 0.13E-01 0.13E-01 46 HPLC:DVChl-a mg/m^3 0 0 47 HPLC:Chl-a mg/m^3 3.955 3.955 48 HPLC:Phe mg/m^3 0 0 49 HPLC:B-Car mg/m^3 0 0 50 HPLC:TChl-a mg/m^3 3.955 3.955 51 Flag:HPLC ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 5 I I 0 3 -99 ' ' 5 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 -99 ' ' 5 I I 0 14 -99 ' ' 9 F R4 4 15 -99 ' ' 3 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 -99 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 -99 ' ' 3 NQ C ' ' 20 -99 ' ' 8 F R4 3 21 -99 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 -99 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 -99 ' ' 8 F R4 3 26 -99 ' ' 8 F R4 3 27 -99 ' ' 8 F R4 3 28 -99 ' ' 8 F R4 3 29 -99 ' ' 8 F R4 3 30 -99 ' ' 8 F R4 3 31 -99 ' ' 8 F R4 3 32 -99 ' ' 8 F R4 3 33 -99 ' ' 8 F R4 3 34 -99 ' ' 8 F R4 3 35 -99 ' ' 8 F R4 3 36 -99 ' ' 8 F R4 3 37 -99 ' ' 8 F R4 3 38 -99 ' ' 8 F R4 3 39 -99 ' ' 8 F R4 3 40 -99 ' ' 8 F R4 3 41 -99 ' ' 8 F R4 3 42 -99 ' ' 8 F R4 3 43 -99 ' ' 8 F R4 3 44 -99 ' ' 8 F R4 3 45 -99 ' ' 8 F R4 3 46 -99 ' ' 8 F R4 3 47 -99 ' ' 8 F R4 3 48 -99 ' ' 8 F R4 3 49 -99 ' ' 8 F R4 3 50 -99 ' ' 8 F R4 3 51 -99 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2016-10 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG/JdF Water Properties Survey SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 3 EVENT NUMBER : 31 LATITUDE : 49 26.60000 N ! (deg min) LONGITUDE : 124 20.15000 W ! (deg min) WATER DEPTH : 317 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4484 Conductivity ' ' 1766 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 4054 Conductivity:2 ' ' 3531 'Oxygen:SBE 43' ' ' 1119 Fluorometer:Seapoint ' ' 3865 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 1252 pH ' ' 0692 PAR/Irradiance:Biospherical/Licor ' ' '4565 QSP200L4S' Unavailable ' ' ' ' 'SPAR/Surface Irradiance' ' ' 20518 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.26.2.13 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.5.2 2017/01/04 08:41:37 3897 3897 CLEAN 5.2.1 2017/01/04 08:42:05 3897 3897 ADDSAMP 3.6 2017/01/04 10:00:14 3897 3897 BINAVE 4.2 2017/01/04 10:00:43 3897 17 MERGE 3.5 2017/01/09 16:46:03 17 17 CLEAN 5.2.1 2017/01/09 16:46:07 17 17 CALIB 11.9 2017/01/09 17:00:15 17 17 SORT 3.6 2017/01/10 12:45:04 17 17 REMOVECH 8.2 2017/01/10 12:45:20 17 17 CHGUNITS 3.1.1 2017/01/10 12:45:42 17 17 CHGUNITS 3.1.1 2017/01/10 12:45:58 17 17 REORDER 1.3.1 2017/01/10 12:46:06 ? ? HDREDIT2 3.0.2 2017/01/10 12:46:22 ? ? SORT 3.6 2020/08/09 15:30:29 17 17 REORDER 1.3.1 2021/11/25 15:53:20 ? ? MERGE 3.5.1 2021/11/25 15:53:31 17 17 SORT 3.6 2021/11/25 15:53:42 17 17 CLEAN 5.2.4 2021/11/25 15:53:49 17 17 HDREDIT2 3.2 2021/11/25 15:54:20 ? ? HDREDIT2 3.2 2021/11/25 15:54:53 ? ? $END $REMARKS -CLEAN functions: 2017/01/04 08:41:58 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2016-10\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2017/01/09 16:46:03 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.samavg Secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2017/01/09 16:45:48 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2017/01/09 16:46:06 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name -CALIB parameters: 2017/01/09 17:00:15 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2016-10\Processing\doc\2016-10-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 20 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1020000E+01 -SORT parameters: 2017/01/10 12:45:04 Sorted in ascending order of channel Pressure* -REMOVECH 2017/01/10 12:45:20 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] pH:SBE [pH Units] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary Salinity reference channel: Salinity:T1:C1 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T1:C1 - No units changed -HEADER EDITS: 2017/01/10 12:46:22 Applied edit header: P:\Cruise_Data_Processing\2016-10\Processing\doc\HYDRO\2016-10-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F11.3 ==> F7.2 Channel 14: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 16: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 18: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 19: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 21: Silicate [umol/L] Units: ==> umol/L Channel 23: Phosphate [umol/L] Units: ==> umol/L Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 -SORT parameters: 2020/08/09 15:30:29 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2021/11/25 15:53:31 Merge Channel: sample_number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: HPLC:Chl-c3 [ ], HPLC:Chlide-a [ ], HPLC:MgDVP [ ], HPLC:Chl-c2 [ ], HPLC:Chl-c1 [ ], HPLC:Me-chlide [ ], HPLC:Peri [ ], HPLC:Pheide-a [ ], HPLC:But-fuco [ ], HPLC:Fuco [ ], HPLC:Neo [ ], HPLC:Pras [ ], HPLC:Viola [ ], HPLC:Hex-fuco [ ], HPLC:Diadino [ ], HPLC:Allo [ ], HPLC:Diato [ ], HPLC:Zea [ ], HPLC:Lut [ ], HPLC:Chl-b [ ], HPLC:C2mgdg, HPLC:DVChl-a [ ], HPLC:Chl-a [ ], HPLC:Phe [ ], HPLC:B-Car [ ], HPLC:TChl-a [ ], Flag:HPLC [ ] Primary file : C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2016\2016-010_Nov2021\Processing\ IOS\2016-010-0031.che2 Secondary file: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2016\2016-010_Nov2021\Processing\ IOS\2016-010-0031.hplc -SORT parameters: 2021/11/25 15:53:42 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2021/11/25 15:53:49 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2021/11/25 15:54:20 Applied edit header: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2016\2016_010\Processing\IOS\ 2016-010-bot-hdr1.txt Channel 2: Bottle_Number [n/a] Format: I3 ==> I5 Channel 3: Bottle:Firing_Sequence [n/a] Format: I3 ==> I5 Channel 25: HPLC:Chl-c3 [mg/m^3] Units: ==> mg/m^3 Channel 26: HPLC:Chlide-a [mg/m^3] Units: ==> mg/m^3 Channel 27: HPLC:MgDVP [mg/m^3] Units: ==> mg/m^3 Channel 28: HPLC:Chl-c2 [mg/m^3] Units: ==> mg/m^3 Channel 29: HPLC:Chl-c1 [mg/m^3] Units: ==> mg/m^3 Channel 30: HPLC:Me-chlide [mg/m^3] Units: ==> mg/m^3 Channel 31: HPLC:Peri [mg/m^3] Units: ==> mg/m^3 Channel 32: HPLC:Pheide-a [mg/m^3] Units: ==> mg/m^3 Channel 33: HPLC:But-fuco [mg/m^3] Units: ==> mg/m^3 Channel 34: HPLC:Fuco [mg/m^3] Units: ==> mg/m^3 Channel 35: HPLC:Neo [mg/m^3] Units: ==> mg/m^3 Channel 36: HPLC:Pras [mg/m^3] Units: ==> mg/m^3 Channel 37: HPLC:Viola [mg/m^3] Units: ==> mg/m^3 Channel 38: HPLC:Hex-fuco [mg/m^3] Units: ==> mg/m^3 Channel 39: HPLC:Diadino [mg/m^3] Units: ==> mg/m^3 Channel 40: HPLC:Allo [mg/m^3] Units: ==> mg/m^3 Channel 41: HPLC:Diato [mg/m^3] Units: ==> mg/m^3 Channel 42: HPLC:Zea [mg/m^3] Units: ==> mg/m^3 Channel 43: HPLC:Lut [mg/m^3] Units: ==> mg/m^3 Channel 44: HPLC:Chl-b [mg/m^3] Units: ==> mg/m^3 Channel 45: HPLC:C2mgdg [mg/m^3] Units: ==> mg/m^3 Channel 46: HPLC:DVChl-a [mg/m^3] Units: ==> mg/m^3 Channel 47: HPLC:Chl-a [mg/m^3] Units: ==> mg/m^3 Channel 48: HPLC:Phe [mg/m^3] Units: ==> mg/m^3 Channel 49: HPLC:B-Car [mg/m^3] Units: ==> mg/m^3 Channel 50: HPLC:TChl-a [mg/m^3] Units: ==> mg/m^3 -HEADER EDITS: 2021/11/25 15:54:53 Applied edit header: C:\Users\Samantha\OneDrive\Documents\SH ios\HPLC\2016\2016_010\Processing\IOS\ 2016-010-bot-hdr2.txt $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\CTD Data\2016-10\2016-10-0031.hex Software Version Seasave V 7.26.2.13 Temperature SN = 4484 Conductivity SN = 1766 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Sep 24 2016 04:06:05 NMEA Latitude = 49 26.60 N NMEA Longitude = 124 20.15 W NMEA UTC (Time) = Sep 24 2016 11:05:06 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 5 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Vector: 2016-10 Station: 3 Depth: 317 System UTC = Sep 24 2016 11:06:05 # nquan = 21 # nvalues = 3897 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = t090C: Temperature [ITS-90, deg C] # name 5 = t190C: Temperature, 2 [ITS-90, deg C] # name 6 = c0S/m: Conductivity [S/m] # name 7 = c1S/m: Conductivity, 2 [S/m] # name 8 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 9 = flSP: Fluorescence, Seapoint # name 10 = par: PAR/Irradiance, Biospherical/Licor # name 11 = spar: SPAR/Surface Irradiance # name 12 = ph: pH # name 13 = sbeox0V: Oxygen raw, SBE 43 [V] # name 14 = altM: Altimeter [m] # name 15 = dz/dtM: Descent Rate [m/s] # name 16 = pumps: Pump Status # name 17 = sal00: Salinity, Practical [PSU] # name 18 = sal11: Salinity, Practical, 2 [PSU] # name 19 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 20 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Sep 24 2016 11:05:06 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4484 # 18-Dec-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.39931830e-003 # 6.40333195e-004 # 2.14332102e-005 # 1.81777421e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 20-Aug-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12823288e+000 # 4.88293788e-001 # -6.13168477e-004 # 5.30399930e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 17-Dec-14 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 1.00002764 # 0.67335 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 4054 # 20-Aug-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38634996e-003 # 6.44413405e-004 # 2.32318430e-005 # 2.13707967e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3531 # 06-Feb-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02073624e+001 # 1.56180514e+000 # -2.18950789e-003 # 2.53511714e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1119 # 19-Dec-15 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.6004e-001 # -0.5129 # -3.1802e-003 # 1.7259e-004 # -3.0507e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.8700 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3865 # # # 2 # 0.000 # # # # # # 1396DR # Feb 2nd 2016 # 19.3228 # -0.0193 # 0.250 # # # # # # # # # 1252 # # 15.000 # 0.000 # # # # # # # # # 0692 # 12-Jan-16 # 4.6015 # 2.5353 # # # # # # 4565 QSP200L4S # 16-Mar-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # # # 20518 # 21-MAR-2016 # 1627.06600000 # 1.00000000 # # # # datcnv_date = Jan 03 2017 15:28:10, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2016-10\RAW\CTD\2016-10-0031.hex P:\Crui se_Data_Processing\2016-10\Processing\doc\2016-10-ctd.XMLCON # datcnv_ox_hysteresis_correction = no # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Comments from secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.sal ------------------------------------------------------------------- Sample_Number 110: SAL: Much scatter in the data due to long delay between collection and analysis and poor Niskin flushing. Comments from secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.chl ------------------------------------------------------------------- Sample_Number 121: CHL: %CV>15 Comments from secondary file: P:\Cruise_Data_Processing\2016-10\Processing\hydro\2016-10-0031.nut ------------------------------------------------------------------- Sample_Number 120: NUTS: Bottle did not trip Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 within 5 weeks of the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Precision Statement: Chlorophyll values ranged from 0.18-9.15 ug/l. Average %CV for this cruise was 4.34% with 3 out of 79 duplicate pairs having a CV>15% and 0 out of 79 duplicate pairs having a CV>50%. Our average dataset %CV is 2.83% for 2013 - 2015 so the overall quality of this dataset is very good. For details see worksheet “CV%” in file QF2016-10CHL*.xls. HPLC samples were filtered onto 47mm GF/F filters and stored at -80C prior to analysis. Samples were extracted in 95% methanol at -20C for 24 hours in the lab and analyzed on a WATERS 2695 HPLC separations system as detailed in Nemcek and Pena, 2014. Analysis was performed ~2.5 months after collection. The average of two samples is reported. Variability is assessed as the %CV (std dev/mean*100) for duplicate pairs. All pigments below the limit of detection (LOD) are assigned a zero value. TChl-a is the sum of Chl-a, DVchl-a, Chlide-a and Me-chlide For further information see file QF 2016-010HPLC*.xlsx. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2016-10OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 57 to 62 days after collection. For details see document QF2016-10SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. All analysis was performed on frozen samples. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document NUTS_QF2016-10*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Nemcek, N. and Peña, M.A. 2014. Institute of Ocean Sciences Protocols for Phytoplankton Pigment Analysis by HPLC. Can. Tech. Rep. Fish. Aquat. Sci. 3117: x + 80 p. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence, PAR and PAR:Reference data are nominal & unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. Channel pH:SBE was removed because the sensor malfunctioned throughout the cruise. For details on the processing see the report: 2016-10_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.02) $END !-1-- -2-- -3-- --4--- ---5---- --6-- ---7--- --8--- --9--- ---10--- --11-- --12- -13- ---14--- 15 --16-- 17 --18-- 19 ---20-- 21 --22-- 23 --24-- ---25-- ---26-- ---27-- ---28-- ---29-- ---30-- ---31-- ---32-- ---33-- ---34-- ---35-- ---36-- ---37-- ---38-- ---39-- ---40-- ---41-- ---42-- ---43-- ---44-- ---45-- ---46-- ---47-- ---48-- ---49-- ---50-- 51 !Samp Bott Bott Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb Salinity Fl Nitrat Fl Silica Fl Phospha Fl Chloro Fl Phaeo- HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC:B- HPLC: Fl !le_ le_ le:F re ure: missi cence: Refere :T1:C1 : n: er_o :Bottle ag e_ ag te ag te ag phyll: ag Pigmen Chl-c3 Chlide- MgDVP Chl-c2 Chl-c1 Me- Peri Pheide- But- Fuco Neo Pras Viola Hex- Diadino Allo Diato Zea Lut Chl-b C2mgdg DVChl-a Chl-a Phe Car TChl-a ag !Numb Numb ~ng_ Secondar vity URU: nce Dissol Disso ~bin ~o plus_ ~t ~i ~p Extrac ~a t: a chlide a fuco fuco : !er er Sequ y Seapoin ved: lved: _rec tt Nitrit ri ca ha ted ct Extrac HP ! ence t SBE SBE ords le e te te te ed ted LC !---- ---- ---- ------ -------- ----- ------- ------ ------ -------- ------ ----- ---- -------- -- ------ -- ------ -- ------- -- ------ -- ------ ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- -- *END OF HEADER 124 16 16 1.9 14.5277 29.3 4.738 5.9 15.9 27.8714 6.26 273.9 41 -99.0000 0 3.55 0 33.73 0 0.722 0 4.71 6 1.70 0.172 0.000 0.061 0.351 0.011 0.000 0.076 0.000 0.080 1.230 0.115 0.197 0.056 0.076 0.096 0.243 0.000 0.115 0.000 0.821 0.013 0.000 3.955 0.000 0.000 3.955 6 125 17 17 1.9 14.5250 29.1 4.744 5.9 15.9 27.8759 6.26 273.9 241 -99.0000 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 123 15 15 4.9 14.4759 32.3 4.227 1.4 15.9 28.1360 6.20 271.3 241 -99.0000 0 3.70 0 33.78 0 0.819 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 122 14 14 10.0 14.4877 32.6 4.259 0.2 15.9 28.1804 6.21 271.8 241 -99.0000 0 7.55 0 36.00 0 1.017 0 3.49 6 1.54 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 121 13 13 20.0 11.4098 56.2 0.513 0.0 15.9 29.3153 3.76 164.1 241 -99.0000 0 23.44 6 47.97 6 1.987 6 0.40 36 0.67 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 120 12 12 30.0 10.7905 57.7 0.198 0.0 15.9 29.5872 3.44 150.0 241 -99.0000 0 -99.00 9 -99.00 9 -99.000 9 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 119 11 11 40.0 10.4696 57.6 0.122 0.0 15.9 29.7579 3.23 141.0 241 -99.0000 0 27.35 0 51.66 0 2.252 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 118 10 10 50.0 10.2810 57.5 0.101 0.0 15.9 29.8171 3.03 132.4 241 -99.0000 0 28.79 0 52.48 0 2.446 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 117 9 9 75.0 9.8112 55.9 0.094 0.0 15.9 30.3570 2.82 123.1 241 -99.0000 0 29.05 0 50.93 0 2.391 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 116 8 8 100.0 10.0267 54.7 0.097 0.0 15.9 30.6162 3.00 130.7 241 -99.0000 0 27.72 0 48.67 0 2.349 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 115 7 7 125.0 10.0027 54.1 0.094 0.0 15.9 30.7323 2.98 130.0 241 -99.0000 0 27.44 0 49.54 0 2.346 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 114 6 6 150.0 9.9729 53.0 0.093 0.0 15.9 30.8862 3.00 130.6 241 -99.0000 0 27.22 6 50.79 6 2.314 6 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 113 5 5 175.0 9.8449 53.0 0.086 0.0 15.9 30.9664 2.92 127.3 241 -99.0000 0 27.41 0 53.71 0 2.249 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 112 4 4 200.1 9.6712 53.9 0.084 0.0 15.9 31.0198 2.82 123.0 241 -99.0000 0 27.75 0 57.04 0 2.328 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 111 3 3 250.0 9.5767 52.4 0.078 0.0 15.9 31.1461 2.83 123.3 241 -99.0000 0 27.74 0 57.58 0 2.437 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 110 2 2 300.1 9.6049 47.9 0.085 0.0 15.9 31.2776 2.87 125.1 241 31.2810 3 27.75 0 53.94 0 2.268 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 109 1 1 317.2 9.6089 46.5 0.085 0.0 15.9 31.2919 2.86 124.5 241 -99.0000 0 27.76 0 54.41 0 2.315 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0