*2015/08/28 13:50:41.49 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2015/06/16 06:48:52.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 589E1748 NUMBER OF CHANNELS : 11 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 24 2 Bottle:Firing_Sequence n/a 1 24 3 Pressure decibar 2.657 200.872 4 Temperature:Primary 'deg C (ITS90)' 4.3336 10.4942 5 Transmissivity %/metre 49.3 65.4 6 Fluorescence:URU:Seapoint mg/m^3 0.1 4.35 7 Salinity:T0:C0 PSS-78 32.5441 33.7675 8 Oxygen:Dissolved:SBE mL/L 2.906 7.11 9 Oxygen:Dissolved:SBE umol/kg 126.3 309.5 10 Number_of_bin_records n/a 84 241 11 Sample_Number n/a 447 470 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2015-09 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P26 EVENT NUMBER : 79 LATITUDE : 50 0.01000 N ! (deg min) LONGITUDE : 144 59.89000 W ! (deg min) WATER DEPTH : 4250 ALTIMETER (M) : 9.94 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 5013 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 1438 Fluorometer:Seapoint ' ' 3640 'Transmissometer:WET Labs C-Star' ' ' 1396DR Altimeter ' ' 62354 PAR/Irradiance:Biospherical/Licor ' ' 4565 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2015/07/31 14:44:57 5509 5509 CLEAN 5.2.1 2015/07/31 14:46:50 5509 5509 ADDSAMP 3.6 2015/08/11 11:40:38 5509 5509 BINAVE 4.2 2015/08/11 11:41:06 5509 24 MERGE 3.5 2015/08/28 11:55:24 24 24 CLEAN 5.2.1 2015/08/28 13:40:53 24 24 CALIB 11.8.1 2015/08/28 13:41:30 24 24 SORT 3.6 2015/08/28 13:41:44 24 24 REMOVECH 8.2 2015/08/28 13:42:31 24 24 CHGUNITS 3.1 2015/08/28 13:49:43 24 24 CHGUNITS 3.1 2015/08/28 13:50:03 24 24 REORDER 1.3.1 2015/08/28 13:50:09 ? ? HDREDIT2 3.0.2 2015/08/28 13:50:41 ? ? $END $REMARKS -CLEAN functions: 2015/07/31 14:46:19 20 Reset #RECS, MIN & MAX values in header. Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2015-09\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2015/08/28 11:55:24 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2015-09\Processing\hydro\2015-09-0079.samavg Secondary file: P:\Cruise_Data_Processing\2015-09\Processing\hydro\2015-09-0079.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2015-09\Processing\hydro\2015-09-0079.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2015/08/28 11:51:21 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2015/08/28 13:40:50 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -CALIB parameters: 2015/08/28 13:41:29 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2015-09\Processing\doc\2015-09-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Oxygen:Dissolved:SBE mL/L 10 0.4520000E-01 0.1024600E+01 -SORT parameters: 2015/08/28 13:41:44 Sorted in ascending order of channel Pressure* -REMOVECH 2015/08/28 13:42:31 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 - No units changed -HEADER EDITS: 2015/08/28 13:50:41 Applied edit header: P:\Cruise_Data_Processing\2015-09\Processing\doc\HYDRO\2015-09-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F9.4 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = E:\Data\2015-09\2015-09-0079.hex Software Version Seasave V 7.22.4 Temperature SN = 2023 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jun 16 2015 06:51:53 NMEA Latitude = 50 00.01 N NMEA Longitude = 144 59.89 W NMEA UTC (Time) = Jun 16 2015 06:48:52 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds advance voltage 6 0.000 seconds advance voltage 7 0.000 seconds S> Ship: J P Tully Cruise: 2015-09 Depth: 4250 Station: P26 Niko's cast System UTC = Jun 16 2015 06:51:53 # nquan = 19 # nvalues = 5509 # units = specified # name 0 = scan: Scan Count # name 1 = bpos: Bottle Position in Carousel # name 2 = nbf: Bottles Fired # name 3 = prDM: Pressure, Digiquartz [db] # name 4 = t090C: Temperature [ITS-90, deg C] # name 5 = t190C: Temperature, 2 [ITS-90, deg C] # name 6 = c0S/m: Conductivity [S/m] # name 7 = c1S/m: Conductivity, 2 [S/m] # name 8 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 9 = flSP: Fluorescence, Seapoint # name 10 = sbeox0V: Oxygen raw, SBE 43 [V] # name 11 = par: PAR/Irradiance, Biospherical/Licor # name 12 = altM: Altimeter [m] # name 13 = dz/dtM: Descent Rate [m/s] # name 14 = pumps: Pump Status # name 15 = sal00: Salinity, Practical [PSU] # name 16 = sal11: Salinity, Practical, 2 [PSU] # name 17 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 18 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Jun 16 2015 06:48:52 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2023 # 31-Jan-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.11056177e-003 # 6.24714349e-004 # 1.97891287e-005 # 1.88702998e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 01-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22314873e+000 # 5.07768024e-001 # -5.15940128e-004 # 5.09668877e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 30-Dec-13 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99997945 # -0.25000 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 5013 # 27-Feb-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36833110e-003 # 6.37693324e-004 # 2.08227492e-005 # 1.72454648e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62060268e+000 # 1.47483016e+000 # -1.36190582e-003 # 1.93968125e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 1438 # 03-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7181e-001 # -0.5187 # -2.2511e-003 # 1.3917e-004 # -2.6436e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 3640 # # # 2 # 0.000 # # # # # # 1396DR # Feb 5tht 2014 # 19.0844 # -0.0191 # 0.250 # # # # # # # # # 62354 # # 15.000 # 0.000 # # # # # # # # # 4565 # Mar-16-2011 # 1.00000000 # 0.00000000 # 4115226337.44999980 # 1.00000000 # -0.36780000 # # # # # # # datcnv_date = Jul 31 2015 12:24:02, 7.23.2 # datcnv_in = P:\Cruise_Data_Processing\2015-09\RAW\CTD\2015-09-0079.hex P:\Crui se_Data_Processing\2015-09\Processing\doc\2015-09-ctd.XMLCON # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes # datcnv_bottle_scan_range_source = BL file # datcnv_scans_per_bottle = 241 END* Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 ~3 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2015-09CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2015-09OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable plastic inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 13 to 37 days after collection. For details including a duplicate analysis, see document QF2015-09SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2015-09nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100C (with a deware containing boiling water) onto a Choromasorb 330 column which eluted onto a Flame Photometric Detector (PFD). All samples were run as soon as possible after being collected. For more detail see file 2015-09 DMS report.doc and for data and duplicate analysis see "DMS summary (2015-09 data).xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.10nmol/L. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2015-09_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.452E-01 1.0246) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ !~u ~u Primary vity URU: Dissol Disso ~bin Numb !mb en Seapoin ved: lved: _rec er !er ce t SBE SBE ords !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- *END OF HEADER 24 24 2.7 10.4927 51.6 2.109 32.5442 6.66 289.9 241 470 23 23 2.7 10.4929 51.7 2.116 32.5441 6.65 289.6 84 469 22 22 5.2 10.4942 51.6 2.115 32.5442 6.66 290.1 241 468 21 21 10.7 10.4878 51.4 2.209 32.5446 6.66 290.3 241 467 20 20 15.4 10.4515 51.0 2.397 32.5455 6.67 290.4 241 466 19 19 20.8 10.3615 50.3 2.792 32.5453 6.70 291.6 241 465 18 18 25.5 9.1238 49.3 4.350 32.5614 6.99 304.3 241 464 16 16 30.1 8.8091 51.6 4.162 32.5625 7.01 305.1 123 462 17 17 30.3 8.7871 51.7 4.158 32.5669 7.01 305.2 241 463 15 15 35.4 7.5188 59.3 1.755 32.5943 7.11 309.5 241 461 14 14 40.5 7.2445 61.2 1.222 32.6021 7.11 309.5 241 460 13 13 45.3 7.2499 62.4 0.988 32.6142 6.99 304.2 241 459 12 12 50.6 7.1350 62.6 0.915 32.6056 7.02 305.7 241 458 11 11 55.9 6.9905 63.4 0.740 32.5992 6.99 304.3 241 457 10 10 60.7 6.9470 63.5 0.706 32.6019 6.97 303.5 241 456 9 9 65.4 6.8367 63.8 0.634 32.6063 6.93 301.5 241 455 8 8 70.8 6.7773 64.1 0.570 32.6187 6.89 299.9 241 454 7 7 80.5 6.6214 64.7 0.451 32.6397 6.83 297.1 241 453 6 6 95.5 5.7119 65.1 0.263 33.3726 5.02 218.3 241 452 5 5 110.6 5.4599 65.3 0.171 33.6419 4.33 188.5 241 451 4 4 124.9 5.2884 65.3 0.142 33.7120 3.95 171.9 241 450 3 3 150.5 4.8720 65.4 0.115 33.7507 3.46 150.5 241 449 2 2 176.1 4.5545 65.2 0.108 33.7612 3.14 136.7 241 448 1 1 200.9 4.3336 65.2 0.100 33.7675 2.91 126.3 241 447