*2015/07/22 12:00:41.19 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2015/02/14 04:44:07.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : EF918344 NUMBER OF CHANNELS : 11 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 24 2 Bottle:Firing_Sequence n/a 1 24 3 Pressure decibar 10.72 3274.77 4 Temperature:Secondary 'deg C (ITS90)' 1.6525 10.4328 5 Transmissivity %/metre 57 67.6 6 Fluorescence:URU:Seapoint mg/m^3 0.53E-01 1.547 7 Salinity:T1:C1 PSS-78 32.328 34.6481 8 Oxygen:Dissolved:SBE mL/L 0.255 6.415 9 Oxygen:Dissolved:SBE umol/kg 11.1 279.5 10 Sample_Number n/a 394 417 11 Number_of_bin_records n/a 48 241 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 -99 ' ' 5 I I 0 11 ' ' ' ' 5 I I 0 $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2015-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P12 EVENT NUMBER : 46 LATITUDE : 48 58.21000 N ! (deg min) LONGITUDE : 130 39.99000 W ! (deg min) WATER DEPTH : 3235 ALTIMETER (M) : 9.72 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 5013 Conductivity:2 ' ' 3394 PAR/Irradiance:Biospherical/Licor ' ' 4615 Altimeter ' ' 'new wet pluggable 1' Fluorometer:Seapoint ' ' 3642 'Oxygen:SBE 43' ' ' 1438 'Transmissometer:WET Labs C-Star' ' ' 1396DR $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2015/05/13 16:55:12 4331 4331 CLEAN 5.2.1 2015/05/13 16:58:13 4331 4331 ADDSAMP 3.6 2015/05/14 09:29:47 4331 4331 BINAVE 4.2 2015/05/14 09:30:50 4331 24 MERGE 3.5 2015/05/14 12:13:54 24 24 CLEAN 5.2.1 2015/05/14 12:13:59 24 24 CALIB 11.8.1 2015/05/20 11:44:37 24 24 CALIB 11.8.1 2015/05/25 15:53:29 24 24 SORT 3.6 2015/05/25 17:21:22 24 24 REMOVECH 8.2 2015/05/26 11:44:33 24 24 CHGUNITS 3.1 2015/05/26 11:45:08 24 24 CHGUNITS 3.1 2015/05/26 11:45:27 24 24 REORDER 1.3.1 2015/05/26 11:48:06 ? ? HDREDIT2 3.0.2 2015/07/22 12:00:41 ? ? $END $REMARKS -CLEAN functions: 2015/05/13 16:57:52 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag* Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2015-01\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2015/05/14 12:13:54 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0046.samavg Secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0046.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0046.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2015/05/14 12:05:01 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2015/05/14 12:13:57 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -CALIB parameters: 2015/05/20 11:44:37 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2015-01\Processing\doc\2015-01-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure decibar 10 0.1250000E+01 0.1000000E+01 -CALIB parameters: 2015/05/25 15:53:29 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2015-01\Processing\doc\2015-01-recal2.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T1:C1 PSS-78 10 -0.1500000E-02 0.1000000E+01 14 Oxygen:Dissolved:SBE mL/L 10 0.5690000E-01 0.1018700E+01 -SORT parameters: 2015/05/25 17:21:22 Sorted in ascending order of channel Pressure* -REMOVECH 2015/05/26 11:44:33 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Altimeter [metres] Status:Pump Voltage:4 [volts] Voltage:5 [volts] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw [ ] Salinity reference channel: Salinity:T1:C1 [PSS-78] - No units changed -HEADER EDITS: 2015/07/22 12:00:41 Applied edit header: P:\Cruise_Data_Processing\2015-01\Processing\doc\HYDRO\2015-01-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were at IOS in Room 2423 ~4 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2015-01CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2015-01OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable plastic inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 10 to 22 days after collection. For details including a duplicate analysis, see document QF2015-01SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2015-01nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100C (with a deware containing boiling water) onto a Choromasorb 330 column which eluted onto a Flame Photometric Detector (PFD). All samples were run as soon as possible after being collected. For more detail see file 2015-01 DMS report.doc and for data and duplicate analysis see "DMS summary (2015-01 data)*.xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.10nmol/L. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2015-01_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure decibar 10 -99 () (1.25 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.15E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.569E-01 1.0187) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Samp Numb !tt tt re ure: missi cence: :T1:C1 : n: le_ er_o !~u ~u Secondar vity URU: Dissol Disso Numb ~bin !mb en y Seapoin ved: lved: er _rec !er ce t SBE SBE ords !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- *END OF HEADER 23 23 10.7 10.4320 57.0 1.547 32.3280 6.41 279.2 416 81 22 22 10.8 10.4320 57.0 1.546 32.3281 6.41 279.3 415 58 24 24 11.1 10.4328 57.0 1.545 32.3281 6.42 279.5 417 241 12 21 250.4 6.5340 66.7 0.058 33.8588 3.99 173.3 405 241 11 20 301.9 5.5762 66.8 0.061 33.8609 3.00 130.6 404 241 10 19 402.1 4.7585 67.2 0.062 33.9360 1.72 74.7 403 241 20 17 499.8 4.3747 67.4 0.061 34.0169 1.15 50.1 413 49 19 16 500.6 4.3750 67.4 0.061 34.0167 1.15 49.9 412 50 21 18 501.3 4.3718 67.4 0.061 34.0187 1.15 49.9 414 241 9 15 601.6 4.1480 67.5 0.062 34.0976 0.75 32.5 402 241 8 14 801.8 3.7945 67.5 0.063 34.2548 0.29 12.8 401 241 16 11 1000.2 3.3522 67.5 0.063 34.3497 0.26 11.1 409 55 17 12 1000.5 3.3521 67.5 0.064 34.3498 0.26 11.2 410 48 7 10 1001.0 3.3516 67.5 0.063 34.3499 0.26 11.1 400 241 18 13 1001.3 3.3520 67.5 0.063 34.3498 0.26 11.1 411 241 6 9 1253.0 2.8372 67.5 0.062 34.4433 0.35 15.3 399 241 5 8 1503.6 2.4464 67.5 0.060 34.5024 0.63 27.4 398 241 14 6 2003.0 1.9853 67.6 0.057 34.5795 1.25 54.4 407 70 4 4 2003.3 1.9851 67.6 0.056 34.5795 1.25 54.5 397 241 15 7 2003.7 1.9846 67.4 0.057 34.5795 1.25 54.5 408 241 13 5 2005.4 1.9851 67.6 0.056 34.5794 1.25 54.4 406 64 3 3 2502.6 1.7616 67.5 0.054 34.6229 1.84 80.1 396 241 2 2 3001.1 1.6525 67.4 0.053 34.6461 2.25 97.9 395 241 1 1 3274.8 1.6660 67.1 0.053 34.6481 2.29 99.3 394 241