*2021/07/19 14:41:54.94 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2015/02/11 11:04:07.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 671D7171 NUMBER OF CHANNELS : 57 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 25 48 2 Bottle_Number n/a 1 24 3 Bottle:Firing_Sequence n/a 1 24 4 Pressure decibar 1.9 178.5 5 Temperature:Secondary 'deg C (ITS90)' 8.5849 9.7647 6 Transmissivity %/metre 40.9 53.9 7 Fluorescence:URU:Seapoint mg/m^3 0.105 1.174 8 PAR uE/m^2/sec 0 0.1 9 Salinity:T1:C1 PSS-78 29.087 33.2401 10 Oxygen:Dissolved:SBE mL/L 3.54 6.27 11 Oxygen:Dissolved:SBE umol/kg 154 273.6 12 Number_of_bin_records n/a 241 241 13 Temperature:Draw 'deg C (ITS90)' 9 9.9 14 Oxygen:Dissolved mL/L 1.708 6.279 15 Oxygen:Dissolved umol/kg 74.3 274.2 16 Flag:Oxygen:Dissolved n/a 17 Nitrate_plus_Nitrite umol/L 15.31 25.72 18 Flag:Nitrate_plus_Nitrite n/a 19 Silicate umol/L 32.14 42.87 20 Flag:Silicate n/a 21 Phosphate umol/L 1.272 2.063 22 Flag:Phosphate n/a 23 Chlorophyll:Extracted mg/m^3 0.42 2.57 24 Flag:Chlorophyll:Extracted n/a 25 Phaeo-Pigment:Extracted mg/m^3 0.33 0.35 26 HPLC:Chl-c3 mg/m^3 0.9E-02 0.29E-01 27 HPLC:Chlide-a mg/m^3 0 0.8E-02 28 HPLC:MgDVP mg/m^3 0.4E-02 0.15E-01 29 HPLC:Chl-c2 mg/m^3 0.26E-01 0.129 30 HPLC:Chl-c1 mg/m^3 0 0.32E-01 31 HPLC:Me-chlide mg/m^3 0 0.7E-02 32 HPLC:Peri mg/m^3 0 0.59E-01 33 HPLC:Pheide-a mg/m^3 0 0 34 HPLC:But-fuco mg/m^3 0 0.6E-02 35 HPLC:Fuco mg/m^3 0.128 0.564 36 HPLC:Neo mg/m^3 0.5E-02 0.5E-02 37 HPLC:Pras mg/m^3 0.9E-02 0.12E-01 38 HPLC:Viola mg/m^3 0 0.8E-02 39 HPLC:Hex-fuco mg/m^3 0 0.14E-01 40 HPLC:Diadino mg/m^3 0.5E-02 0.57E-01 41 HPLC:Allo mg/m^3 0.13E-01 0.24E-01 42 HPLC:Diato mg/m^3 0 0.5E-02 43 HPLC:Zea mg/m^3 0 0 44 HPLC:Lut mg/m^3 0 0 45 HPLC:Chl-b mg/m^3 0.57E-01 0.73E-01 46 HPLC:DVChl-a mg/m^3 0 0 47 HPLC:Chl-a mg/m^3 0.344 1.435 48 HPLC:Phe-a mg/m^3 0 0 49 HPLC:B-Car mg/m^3 0.6E-02 0.27E-01 50 HPLC:TChl-a mg/m^3 0.344 1.45 51 Flag:HPLC ' ' 52 Carbon:Dissolved:Inorganic umol/kg 1912.6 2155.8 53 Flag:Carbon:Dissolved:Inorganic n/a 54 Alkalinity:Total umol/kg 2020.7 2189.9 55 Flag:Alkalinity:Total n/a 56 pH ' ' 7.5324 7.7197 57 Flag:pH ' ' $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 -99 ' ' 5 I I 0 13 -99 ' ' 6 F R4 1 14 -99 ' ' 8 F R4 3 15 -99 ' ' 6 F ' ' 1 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 8 F R4 3 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 -99 ' ' 8 F R4 3 27 -99 ' ' 8 F R4 3 28 -99 ' ' 8 F R4 3 29 -99 ' ' 8 F R4 3 30 -99 ' ' 8 F R4 3 31 -99 ' ' 8 F R4 3 32 -99 ' ' 8 F R4 3 33 -99 ' ' 8 F R4 3 34 -99 ' ' 8 F R4 3 35 -99 ' ' 8 F R4 3 36 -99 ' ' 8 F R4 3 37 -99 ' ' 8 F R4 3 38 -99 ' ' 8 F R4 3 39 -99 ' ' 8 F R4 3 40 -99 ' ' 8 F R4 3 41 -99 ' ' 8 F R4 3 42 -99 ' ' 8 F R4 3 43 -99 ' ' 8 F R4 3 44 -99 ' ' 8 F R4 3 45 -99 ' ' 8 F R4 3 46 -99 ' ' 8 F R4 3 47 -99 ' ' 8 F R4 3 48 -99 ' ' 8 F R4 3 49 -99 ' ' 8 F R4 3 50 -99 ' ' 8 F R4 3 51 0 ' ' 3 NQ C ' ' 52 -99 ' ' ' ' F7.1 R4 ' ' 53 0 ' ' 3 NQ C ' ' 54 -99 ' ' ' ' F7.1 R4 ' ' 55 0 ' ' 3 NQ C ' ' 56 -99 ' ' ' ' F8.4 R4 ' ' 57 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2015-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : JF2 EVENT NUMBER : 5 LATITUDE : 48 18.05000 N ! (deg min) LONGITUDE : 124 0.02000 W ! (deg min) WATER DEPTH : 186 ALTIMETER (M) : 10.43 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 5013 Conductivity:2 ' ' 3394 PAR/Irradiance:Biospherical/Licor ' ' 4615 Altimeter ' ' 'new wet pluggable 1' Fluorometer:Seapoint ' ' 3642 'Oxygen:SBE 43' ' ' 1438 'Transmissometer:WET Labs C-Star' ' ' 1396DR $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2015/05/13 16:54:54 5784 5784 CLEAN 5.2.1 2015/05/13 16:57:54 5784 5784 ADDSAMP 3.6 2015/05/14 09:29:30 5784 5784 BINAVE 4.2 2015/05/14 09:30:40 5784 24 MERGE 3.5 2015/05/14 12:13:52 24 24 CLEAN 5.2.1 2015/05/14 12:13:57 24 24 CALIB 11.8.1 2015/05/20 11:44:35 24 24 CALIB 11.8.1 2015/05/25 15:53:27 24 24 SORT 3.6 2015/05/25 17:21:22 24 24 REMOVECH 8.2 2015/05/26 11:44:12 24 24 CHGUNITS 3.1 2015/05/26 11:45:07 24 24 CHGUNITS 3.1 2015/05/26 11:45:26 24 24 REORDER 1.3.1 2015/05/26 11:48:05 ? ? HDREDIT2 3.0.2 2015/07/22 12:00:38 ? ? SORT 3.6 2020/07/16 11:20:16 24 24 REORDER 1.3.1 2020/07/16 11:28:18 ? ? MERGE 3.5.1 2020/07/22 10:35:30 24 24 SORT 3.6 2020/07/22 10:36:41 24 24 HDREDIT2 3.2 2020/07/22 10:37:13 ? ? HDREDIT2 3.2 2020/07/22 10:37:42 ? ? SORT 3.6 2021/07/19 14:09:31 24 24 MERGE 3.6 2021/07/19 14:13:07 24 24 SORT 3.6 2021/07/19 14:14:02 24 24 CLEAN 5.2.4 2021/07/19 14:14:22 24 24 HDREDIT2 3.2 2021/07/19 14:41:54 ? ? $END $REMARKS -CLEAN functions: 2015/05/13 16:57:52 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag* Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2015-01\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2015/05/14 12:13:52 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0005.samavg Secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0005.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0005.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2015/05/14 12:05:01 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2015/05/14 12:13:57 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Remove Sea-Bird comments from the header. -CALIB parameters: 2015/05/20 11:44:35 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2015-01\Processing\doc\2015-01-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure decibar 10 0.1250000E+01 0.1000000E+01 -CALIB parameters: 2015/05/25 15:53:27 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2015-01\Processing\doc\2015-01-recal2.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T1:C1 PSS-78 10 -0.1500000E-02 0.1000000E+01 14 Oxygen:Dissolved:SBE mL/L 10 0.5690000E-01 0.1018700E+01 -SORT parameters: 2015/05/25 17:21:22 Sorted in ascending order of channel Pressure* -REMOVECH 2015/05/26 11:44:12 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Altimeter [metres] Status:Pump Voltage:4 [volts] Voltage:5 [volts] Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw [ ] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2015/07/22 12:00:38 Applied edit header: P:\Cruise_Data_Processing\2015-01\Processing\doc\HYDRO\2015-01-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F11.2 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 14: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 15: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 16: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 17: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 19: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 20: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 21: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 22: Silicate [umol/L] Units: ==> umol/L Channel 23: Flag:Silicate [n/a] Units: ==> n/a Channel 24: Phosphate [umol/L] Units: ==> umol/L Channel 25: Flag:Phosphate [n/a] Units: ==> n/a -SORT parameters: 2020/07/16 11:20:16 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2020/07/22 10:35:30 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: HPLC:Chl-c3, HPLC:Chlide-a, HPLC:MgDVP, HPLC:Chl-c2, HPLC:Chl-c1, HPLC:Me-chlide, HPLC:Peri, HPLC:Pheide-a, HPLC:But-fuco, HPLC:Fuco, HPLC:Neo, HPLC:Pras, HPLC:Viola, HPLC:Hex-fuco, HPLC:Diadino, HPLC:Allo, HPLC:Diato, HPLC:Zea, HPLC:Lut, HPLC:Chl-b, HPLC:DVChl-a, HPLC:Chl-a, HPLC:Phe-a, HPLC:B-Car, HPLC:TChl-a, Flag:HPLC Primary file : D:\Telework\HPLC\2015-001\processing\2015-001-0005.CHE2 Secondary file: D:\Telework\HPLC\2015-001\processing\2015-001-0005.hplc -SORT parameters: 2020/07/22 10:36:41 Sorted in ascending order of channel Pressure -HEADER EDITS: 2020/07/22 10:37:13 Applied edit header: D:\Telework\HPLC\2015-001\Processing\DOC\2015-001-bot-hdr1.txt Channel 12: Number_of_bin_records [n/a] Pad: ' ' ==> -99 -HEADER EDITS: 2020/07/22 10:37:42 Applied edit header: D:\Telework\HPLC\2015-001\Processing\DOC\2015-001-bot-hdr2.txt -SORT parameters: 2021/07/19 14:09:31 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2021/07/19 14:13:07 Merge Channel: Sample_Number Merge Scheme Used: 2: Add Secondary to Closest Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic [ ], Flag:Carbon:Dissolved:Inorganic [ ], Alkalinity:Total [ ], Flag:Alkalinity:Total [ ], pH [ ], Flag:pH [ ] Primary file : C:\Users\huntingtons\Desktop\Carbon Additions\2015-001\Processing\IOS\2015-001- 0005.srt1 Secondary file: C:\Users\huntingtons\Desktop\Carbon Additions\2015-001\Processing\IOS\2015-001- 0005.dic 13 secondary records matched to primary records. -SORT parameters: 2021/07/19 14:14:02 Sorted in ascending order of channel Pressure [decibar] -CLEAN functions: 2021/07/19 14:14:22 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* -HEADER EDITS: 2021/07/19 14:41:54 Applied edit header: C:\Users\huntingtons\Desktop\Carbon Additions\2015-001\Processing\IOS\2015- 001_carbon_header.txt Channel 52: Carbon:Dissolved:Inorganic [umol/kg] Units: ==> umol/kg Channel 53: Flag:Carbon:Dissolved:Inorganic [n/a] Units: ==> n/a Channel 54: Alkalinity:Total [umol/kg] Units: ==> umol/kg Channel 55: Flag:Alkalinity:Total [n/a] Units: ==> n/a $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0005.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2015-01\Processing\hydro\2015-01-0005.oxy ------------------------------------------------------------------- Sample_Number 25: OXY: Runaway titration due to serial port drop. Very likely that the endpoint is overshot. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were at IOS in Room 2423 ~4 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2015-01CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. HPLC samples were filtered onto 47mm GF/F filters and stored at -80C prior to analysis. Samples were extracted in 95% methanol at -20C for 24 hours in the lab and analyzed on a WATERS 2695 HPLC separations system as detailed in Nemcek and Pena, 2014. Analysis was performed ~1 month after collection. The average of two samples is reported. Variability is assessed as the %CV (std dev/mean*100) for duplicate pairs. All pigments below the limit of detection (LOD) are assigned a zero value. TChl-a is the sum of Chl-a, DVchl-a, Chlide-a and Me-chlide For further information see file QF2015-001HPLC*.xlsx. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2015-01OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable plastic inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 10 to 22 days after collection. For details including a duplicate analysis, see document QF2015-01SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2015-01nuts*.xls. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed on to a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100C (with a deware containing boiling water) onto a Choromasorb 330 column which eluted onto a Flame Photometric Detector (PFD). All samples were run as soon as possible after being collected. For more detail see file 2015-01 DMS report.doc and for data and duplicate analysis see "DMS summary (2015-01 data)*.xls." The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.10nmol/L. Dissolved inorganic carbon (DIC) was determined using coulometric analysis of unfiltered samples. Total alkalinity (Alk) was determined by potentiometric titration. pH on the total hydrogen ion concentration scale was determined photometrically and is reported at 25C and surface pressure. Complete documentation on DIC, ALK and pH sampling, analysis and precision estimates can be found in the Carbon Excel file from the cruise located in the cruise "DOC" directory. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 5. Nemcek, N. and Peña, M.A. 2014. Institute of Ocean Sciences Protocols for Phytoplankton Pigment Analysis by HPLC. Can. Tech. Rep. Fish. Aquat. Sci. 3117: x + 80 p. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. For details on the processing see the report: 2015-01_Processing_Report.doc. --------------------------------------------------------------------------------- Comments from secondary file: C:\Users\huntingtons\Desktop\Carbon Additions\2015-001\Processing\IOS\2015-001-0005.dic --------------------------------------------------------------------------- Sample_Number 25: DIC, ALK, pH: Inconsistent w/other CO2 system variables *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure decibar 10 -99 () (1.25 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.15E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.569E-01 1.0187) $END !-1-- 2- 3- --4--- ---5---- --6-- ---7--- --8--- ---9---- --10-- --11- -12- --13- ---14-- --15- 16 --17-- 18 --19-- 20 ---21-- 22 --23-- 24 --25-- ---26-- ---27-- ---28-- ---29-- ---30-- ---31-- ---32-- ---33-- ---34-- ---35-- ---36-- ---37-- ---38-- ---39-- ---40-- ---41-- ---42-- ---43-- ---44-- ---45-- ---46-- ---47-- ---48-- ---49-- ---50-- 51 --52-- 53 --54-- 55 ---56-- 57 !Samp Bo Bo Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb Tempe Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl Chloro Fl Phaeo- HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC: HPLC:B- HPLC: Fl Carbon Fl Alkali Fl pH Fl !le_ tt tt re ure: missi cence: :T1:C1 : n: er_o ratur Dissolv n: ag e_ ag te ag te ag phyll: ag Pigmen Chl-c3 Chlide- MgDVP Chl-c2 Chl-c1 Me- Peri Pheide- But- Fuco Neo Pras Viola Hex- Diadino Allo Diato Zea Lut Chl-b DVChl-a Chl-a Phe-a Car TChl-a ag :Disso ag nity: ag ag !Numb ~u ~u Secondar vity URU: Dissol Disso ~bin e: ed Disso ~o plus_ ~t ~i ~p Extrac ~a t: a chlide a fuco fuco : lved: ~g Total ~T : !er mb en y Seapoin ved: lved: _rec Draw lved lv Nitrit ri ca ha ted ct Extrac HP Inorga an ot pH ! er ce t SBE SBE ords ed e te te te ed ted LC nic ic al !---- -- -- ------ -------- ----- ------- ------ -------- ------ ----- ---- ----- ------- ----- -- ------ -- ------ -- ------- -- ------ -- ------ ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- ------- -- ------ -- ------ -- ------- -- *END OF HEADER 37 13 24 1.9 9.7647 49.6 1.087 0.1 29.0870 6.27 273.6 241 9.9 6.279 274.2 0 15.31 0 32.14 0 1.272 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 1912.6 0 2022.2 0 7.7197 0 36 12 22 6.6 9.6880 48.6 1.174 0.0 29.3428 6.07 265.2 241 9.5 6.044 263.9 0 17.13 0 33.90 0 1.399 0 2.57 6 0.35 0.029 0.008 0.015 0.129 0.032 0.007 0.059 0.000 0.006 0.564 0.005 0.012 0.008 0.014 0.057 0.024 0.005 0.000 0.000 0.073 0.000 1.435 0.000 0.027 1.450 6 1935.9 0 2020.7 0 7.6891 0 48 24 23 6.7 9.6828 48.9 1.138 0.0 29.3433 6.08 265.5 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 35 11 21 11.0 9.3586 48.8 1.012 0.0 30.0133 5.75 251.0 241 9.1 5.738 250.4 0 20.62 0 37.65 0 1.664 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 1976.0 0 2056.1 0 7.6341 6 47 23 20 11.0 9.3646 48.9 1.023 0.0 30.0000 5.76 251.2 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 34 10 18 21.6 8.8922 50.3 0.685 0.0 30.9196 5.17 225.6 241 9.0 5.138 224.0 0 25.24 0 42.60 0 2.020 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2042.3 6 2100.9 0 7.5544 0 46 22 19 21.6 8.8881 50.5 0.662 0.0 30.9302 5.17 225.4 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 33 9 17 30.7 8.8331 51.9 0.424 0.0 31.1265 4.94 215.4 241 9.0 4.916 214.3 0 25.69 0 42.87 0 2.063 0 0.42 6 0.33 0.009 0.000 0.004 0.026 0.000 0.000 0.000 0.000 0.000 0.128 0.005 0.009 0.000 0.000 0.005 0.013 0.000 0.000 0.000 0.057 0.000 0.344 0.000 0.006 0.344 6 2054.9 0 2113.4 0 7.5415 0 45 21 16 30.7 8.8314 51.9 0.424 0.0 31.1328 4.93 215.0 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 32 8 14 41.4 8.8131 52.5 0.313 0.0 31.2562 4.81 209.8 241 9.0 4.795 209.0 0 25.68 0 42.49 0 2.059 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2064.2 0 2136.0 0 7.5430 0 44 20 15 41.4 8.8131 52.5 0.310 0.0 31.2560 4.81 209.7 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 43 19 12 51.3 8.8128 52.6 0.293 0.0 31.2988 4.77 207.8 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 31 7 13 51.4 8.8128 52.6 0.295 0.0 31.2975 4.77 207.9 241 9.0 4.728 206.1 0 25.69 6 42.19 6 2.061 6 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2068.4 0 2137.7 0 7.5357 0 30 6 10 61.1 8.8068 52.9 0.249 0.0 31.3866 4.68 204.2 241 9.0 4.668 203.5 0 25.72 0 41.80 0 2.055 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2068.9 6 2138.1 0 7.5372 0 42 18 11 61.2 8.8068 52.9 0.248 0.0 31.3866 4.69 204.3 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 29 5 9 81.5 8.8107 50.5 0.247 0.0 31.6126 4.51 196.6 241 9.1 4.498 196.0 6 25.65 0 40.73 0 2.043 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2069.9 0 2151.2 3 7.5373 0 41 17 8 81.5 8.8108 50.5 0.250 0.0 31.6123 4.51 196.7 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 28 4 6 101.5 8.8173 48.6 0.214 0.0 31.7945 4.42 192.4 241 9.0 4.388 191.2 0 25.58 0 39.86 0 2.030 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2082.9 0 2155.8 0 7.5382 0 40 16 7 101.5 8.8173 49.0 0.215 0.0 31.7921 4.42 192.6 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 27 3 5 126.5 8.8735 53.3 0.160 0.0 32.1874 4.27 185.8 241 9.0 4.235 184.5 0 24.68 0 36.59 0 1.954 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2102.5 0 2172.8 0 7.5486 6 39 15 4 126.5 8.8675 53.2 0.157 0.0 32.2048 4.26 185.4 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 26 2 2 151.5 8.8728 53.9 0.135 0.0 32.6031 4.05 176.3 241 9.1 4.015 174.8 0 24.31 0 34.13 0 1.910 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2121.3 6 2189.9 6 7.5522 0 38 14 3 151.5 8.8729 53.7 0.136 0.0 32.6034 4.05 176.2 241 -99.0 -99.000 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 -99.0 0 -99.0 0 -99.0000 0 25 1 1 178.5 8.5849 40.9 0.105 0.0 33.2401 3.54 154.0 241 9.0 1.708 74.3 4 25.27 0 34.02 0 1.968 0 -99.00 0 -99.00 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 -99.000 0 2155.8 3 2185.5 3 7.5324 3