*2014/11/20 09:46:44.92 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2014/06/16 16:57:49.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 78711971 NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 11 2 Bottle_Number n/a 1 11 3 Pressure decibar 1.631 155.574 4 Temperature:Secondary 'deg C (ITS90)' 8.105 14.3559 5 Transmissivity %/metre 44.8 54.5 6 Fluorescence:URU:Seapoint mg/m^3 0.98E-01 0.903 7 PAR uE/m^2/sec 0.3E-02 1392.171 8 PAR:Reference uE/m^2/sec 542.435 721.984 9 pH:SBE:Nominal n/a 8.215 9.025 10 Salinity:T1:C1 PSS-78 27.5495 30.6481 11 Oxygen:Dissolved:SBE mL/L 3.728 6.8 12 Oxygen:Dissolved:SBE umol/kg 162.6 297.5 13 Number_of_bin_records n/a 241 241 14 Sample_Number n/a 22 32 15 Temperature:Draw 'deg C (ITS90)' 11.8 15.9 16 Salinity:Bottle PSS-78 30.5942 30.5942 17 Flag:Salinity:Bottle n/a 18 Chlorophyll:Extracted mg/m^3 0.83 2.46 19 Flag:Chlorophyll:Extracted n/a 20 Phaeo-Pigment:Extracted mg/m^3 0.25 1.18 21 Oxygen:Dissolved mL/L 3.72 6.835 22 Oxygen:Dissolved umol/kg 162.3383 299.1368 23 Flag:Oxygen:Dissolved n/a 24 Nitrate_plus_Nitrite umol/L 1 33.2 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 9.68 63.62 27 Flag:Silicate n/a 28 Phosphate umol/L 0.334 2.694 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 8 F ' ' 3 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 ' ' ' ' 5 I I 0 14 -99 ' ' 5 I I 0 15 -99 ' ' 6 F R4 1 16 -99 ' ' 9 F R4 4 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 6 F R4 1 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 8 F R4 3 29 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2014-23 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG/JdF Water Properties Survey SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia/Juan de Fuca Strait STATION : 16 EVENT NUMBER : 12 LATITUDE : 49 57.64000 N ! (deg min) LONGITUDE : 125 8.80000 W ! (deg min) WATER DEPTH : 156 ALTIMETER (M) : 2.22 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0724 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4397 Conductivity ' ' 2992 'Pressure:Digiquartz with TC' ' ' 90559 Temperature:2 ' ' 4402 Conductivity:2 ' ' 2984 'Oxygen:SBE 43' ' ' 1483 PAR/Irradiance:Biospherical/Licor ' ' 4656 Fluorometer:Seapoint ' ' 3640 pH ' ' 0691 Altimeter ' ' 43281 'Transmissometer:WET Labs C-Star' ' ' 983DR Unavailable ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.23.1 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/10/31 09:11:59 2651 2651 CLEAN 5.1 2014/10/31 09:13:00 ? ? ADDSAMP 3.6 2014/10/31 09:32:39 2651 2651 BINAVE 4.2 2014/10/31 09:33:17 2651 11 MERGE 3.5 2014/11/04 09:33:13 11 11 CLEAN 5.1 2014/11/04 09:33:26 11 11 CALIB 11.8 2014/11/06 14:51:22 11 11 SORT 3.6 2014/11/10 15:56:54 11 11 REMOVECH 8.2 2014/11/10 17:10:45 11 11 CHGUNITS 3.1 2014/11/10 17:11:20 11 11 CHGUNITS 3.1 2014/11/10 17:11:42 11 11 REORDER 1.3 2014/11/10 17:12:27 ? ? HDREDIT2 2.6 2014/11/12 13:29:45 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:46:44 11 11 $END $REMARKS -CLEAN functions: 2014/10/31 09:12:58 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2014-23\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2014/11/04 09:33:13 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2014-23\Processing\hydro\2014-23-0012.samavg Secondary file: P:\Cruise_Data_Processing\2014-23\Processing\hydro\2014-23-0012.mrgcln1s -SORT parameters: 2014/10/31 09:38:29 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2014/11/04 09:33:26 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2014/11/06 14:51:22 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2014-23\Processing\doc\2014-23-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Oxygen:Dissolved:SBE mL/L 10 0.3700000E-02 0.1040000E+01 -SORT parameters: 2014/11/10 15:56:54 Sorted in ascending order of channel Pressure* -REMOVECH 2014/11/10 17:10:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Altimeter [metres] Status:Pump Flag -CHANGE units: Temperature reference channel: Temperature:Secondary [deg C (ITS90)] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw [ ] Salinity reference channel: Salinity:T1:C1 [PSS-78] 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2014/11/12 13:29:45 Applied edit header: P:\Cruise_Data_Processing\2014-23\Processing\doc\HYDRO\2014-23-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 11: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 16: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 17: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 18: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 19: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 21: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 23: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 24: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 25: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 26: Silicate [umol/L] Units: ==> umol/L Channel 27: Flag:Silicate [n/a] Units: ==> n/a Channel 28: Phosphate [umol/L] Units: ==> umol/L Channel 29: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a $END *COMMENTS Sample_Number 29: OXY-2: Copepod in sample Sample_Number 32: OXY: Sample did not have a water seal. No expansion occurred in the time from sample collection to analysis so sample likely ok. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 about 6 weeks after the cruise. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2014-23CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2014-23OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 41 to 45 days after collection. For details see document QF2014-23SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. All analysis was performed on frozen samples. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For details see document QF2014-23nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence, pH, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see the report: 2014-23-proc.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.37E-02 1.04) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- --8--- ---9--- ---10--- --11-- --12- -13- -14- --15- ---16--- 17 --18-- 19 --20-- ---21-- --22- 23 --24- 25 --26-- 27 ---28-- 29 !Bo Bo Pressu Temperat Trans Fluores PAR PAR: pH:SBE: Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: Refere Nominal :T1:C1 : n: er_o le_ ratur :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag te ag te ag !~u ~u Secondar vity URU: nce Dissol Disso ~bin Numb e: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !en mb y Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------ ------ ------- -------- ------ ----- ---- ---- ----- -------- -- ------ -- ------ ------- ----- -- ----- -- ------ -- ------- -- *END OF HEADER 11 11 1.6 14.3559 44.8 0.658 1392.2 564.7 9.025 27.5495 6.80 297.5 241 32 15.9 -99.0000 0 2.46 6 0.25 6.835 299.1 3 1.0 0 9.68 0 0.334 0 10 10 5.0 12.2156 46.7 0.903 478.4 542.4 8.800 28.4914 5.96 260.3 241 31 13.8 -99.0000 0 -99.00 0 -99.00 5.876 256.9 0 12.7 0 28.65 0 1.185 0 9 9 10.2 9.8589 50.0 0.564 116.0 563.3 8.476 29.6547 4.83 210.6 241 30 12.2 -99.0000 0 1.02 6 1.18 4.826 210.7 0 23.6 6 45.74 6 2.038 6 8 8 20.2 9.5736 51.0 0.478 18.2 612.9 8.426 29.7962 4.62 201.8 241 29 12.1 -99.0000 0 0.83 6 1.18 4.643 202.7 26 25.4 0 48.00 0 2.151 0 7 7 30.0 9.3826 52.8 0.391 4.0 557.4 8.393 29.8841 4.48 195.5 241 28 11.8 -99.0000 0 -99.00 0 -99.00 4.507 196.7 0 26.2 0 49.36 0 2.230 0 6 6 40.0 9.3255 52.7 0.364 1.0 543.4 8.382 29.9172 4.46 194.5 241 27 11.9 -99.0000 0 -99.00 0 -99.00 4.469 195.1 0 26.8 0 49.85 0 2.241 0 5 5 50.5 9.2975 52.8 0.357 0.2 623.5 8.375 29.9280 4.44 193.6 241 26 12.2 -99.0000 0 -99.00 0 -99.00 4.447 194.1 0 26.9 6 50.18 6 2.270 6 4 4 75.7 8.3452 54.5 0.153 0.0 592.6 8.215 30.3458 3.73 162.6 241 25 11.9 -99.0000 0 -99.00 0 -99.00 3.720 162.3 6 32.6 0 59.00 0 2.670 0 3 3 100.9 8.1901 53.8 0.131 0.0 682.4 8.216 30.4793 3.79 165.4 241 24 11.9 -99.0000 0 -99.00 0 -99.00 3.778 164.9 0 32.9 0 60.75 0 2.675 0 2 2 125.0 8.1050 53.8 0.098 0.0 671.6 8.221 30.5928 3.82 166.5 241 23 11.8 30.5942 0 -99.00 0 -99.00 3.830 167.1 0 33.0 0 62.22 0 2.694 0 1 1 155.6 8.1051 53.1 0.113 0.0 722.0 8.221 30.6481 3.78 164.7 241 22 12.2 -99.0000 0 -99.00 0 -99.00 3.770 164.5 0 33.2 0 63.62 0 2.692 0