*2015/03/30 11:18:21.24 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2014/08/23 21:30:24.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 23 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : D0B1F440 NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 23 2 Bottle:Firing_Sequence n/a 1 23 3 Pressure decibar 4.944 3274.625 4 Temperature:Primary 'deg C (ITS90)' 1.6424 18.6431 5 Transmissivity %/metre 59.9 67.7 6 Fluorescence:URU:Seapoint mg/m^3 0.59E-01 1.904 7 Salinity:T0:C0 PSS-78 32.2026 34.647 8 Oxygen:Dissolved:SBE mL/L 0.226 6.281 9 Oxygen:Dissolved:SBE umol/kg 9.8 273.6 10 Number_of_bin_records n/a 69 241 11 Sample_Number n/a 285 307 12 Temperature:Draw 'deg C (ITS90)' 7.3 19.1 13 Salinity:Bottle PSS-78 32.2123 34.6488 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 0.23 6.3 16 Oxygen:Dissolved umol/kg 10.00034 274.5988 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 0 46.43 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 4.04 176.11 21 Flag:Silicate n/a 22 Phosphate umol/L 0.404 3.274 23 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 6 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 8 F R4 3 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels were initialized with zeros. Non-zero values have the following significance: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2014-19 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P12 EVENT NUMBER : 49 LATITUDE : 48 58.26000 N ! (deg min) LONGITUDE : 130 39.94000 W ! (deg min) WATER DEPTH : 3230 ALTIMETER (M) : 10.43 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2663 Conductivity:2 ' ' 2754 'Oxygen:SBE 43' ' ' 0997 Fluorometer:Seapoint ' ' 3642 'Transmissometer:WET Labs C-Star' ' ' 1396DR PAR/Irradiance:Biospherical/Licor ' ' 4615 Altimeter ' ' 1204 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/12/17 17:39:16 5371 5371 CLEAN 5.2.1 2014/12/17 17:40:08 ? ? ADDSAMP 3.6 2014/12/18 09:38:23 5371 5371 BINAVE 4.2 2014/12/18 11:16:03 5371 23 MERGE 3.5 2015/01/29 11:27:27 23 23 CLEAN 5.2.1 2015/01/29 11:27:32 23 23 CALIB 11.8.1 2015/01/29 13:40:44 23 23 CALIB 11.8.1 2015/01/29 13:40:54 23 23 SORT 3.6 2015/03/30 10:49:04 23 23 REMOVECH 8.2 2015/03/30 11:14:00 23 23 CHGUNITS 3.1 2015/03/30 11:17:41 23 23 CHGUNITS 3.1 2015/03/30 11:17:59 23 23 REORDER 1.3.1 2015/03/30 11:18:06 ? ? HDREDIT2 3.0.2 2015/03/30 11:18:21 ? ? $END $REMARKS -CLEAN functions: 2014/12/17 17:39:51 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2014-19\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2015/01/29 11:27:27 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2014-19\Processing\hydro\2014-19-0049.samavg Secondary file: P:\Cruise_Data_Processing\2014-19\Processing\hydro\2014-19-0049.mrgcln1s -SORT parameters: 2015/01/29 11:27:18 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2015/01/29 11:27:31 20 Reset #RECS, MIN & MAX values in header. Change character data from " " to "0" in channels Flag:* Set event to last 4 characters of file name Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2015/01/29 13:40:44 Calibration type = Correct Mode: HEAD - calibration specs from header only. Calibration file = P:\Cruise_Data_Processing\2014-19\Processing\doc\2014-19-recal1.CCF WARNING: No calibration done on file P:\Cruise_Data_Processing\2014-19\Processing\hydro\2014-19- 0049.mrgcor1 -CALIB parameters: 2015/01/29 13:40:54 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2014-19\Processing\doc\2014-19-recal2-che.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Oxygen:Dissolved:SBE mL/L 10 -0.1050000E+00 0.1032600E+01 -SORT parameters: 2015/03/30 10:49:04 Sorted in ascending order of channel Pressure* -REMOVECH 2015/03/30 11:14:00 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Altimeter [metres] Status:Pump Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2015/03/30 11:18:21 Applied edit header: P:\Cruise_Data_Processing\Temp\2014-19 temp\hydro\2014-19-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 13: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 14: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 17: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Format: F6.2 ==> F7.2 Channel 19: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 20: Silicate [umol/L] Units: ==> umol/L Channel 21: Flag:Silicate [n/a] Units: ==> n/a Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 23: Flag:Phosphate [n/a] Units: ==> n/a $END *COMMENTS Sample_Number 288: OXY-2: Titration was noisy. Sample_Number 290: OXY: Messy titration curve. Endpoint ambiguous. Sample_Number 289: Sil: Chauvenet outlier in duplicate study Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship during the cruise or at IOS in Room 1409 about 7 weeks later. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2014-19CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2014-19OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Ltd. and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 4 to 19 days after collection. For details including a duplicate analysis, see document QF2014-19SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For details see document QF2014-19nuts*.xls. DMS samples were analyzed at sea. For details on the collection and analysis of the DMS data see file 2014-19 DMS report.doc and for data see "DMS summary (2014-19 data)*.xls." The minimum detectable level for DMS is 0.10 nMol/L, so “0” values should be interpreted as <0.10nmol/L. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Post-cruise calibration reports indicate that the primary temperature and conductivity sensors had insignificant drifts. Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except offsets in the fit are allowed. For details on the processing see document: 2014-19_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.105 1.0326) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- --12- ---13--- 14 ---15-- --16- 17 --18-- 19 --20-- 21 ---22-- 23 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Oxygen: Oxyge Fl Nitrat Fl Silica Fl Phospha Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ ratur :Bottle ag Dissolv n: ag e_ ag te ag te ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb e: ~o ed Disso ~o plus_ ~t ~i ~p !mb en Seapoin ved: lved: _rec er Draw tt lved lv Nitrit ri ca ha !er ce t SBE SBE ords le ed e te te te !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- ----- -------- -- ------- ----- -- ------ -- ------ -- ------- -- *END OF HEADER 23 23 4.9 18.6431 63.2 0.306 32.2039 5.53 241.5 241 307 19.1 32.2123 0 5.536 241.6 0 0.00 0 4.05 0 0.404 0 22 22 10.3 18.6250 63.2 0.337 32.2026 5.53 241.4 241 306 18.9 -99.0000 0 5.539 241.7 0 0.00 0 4.04 0 0.407 0 21 21 24.4 16.0796 61.6 0.657 32.2155 6.11 266.6 241 305 16.9 -99.0000 0 6.112 266.6 0 0.00 0 4.95 0 0.443 0 20 20 49.7 10.6059 59.9 1.818 32.3231 6.28 273.6 241 304 13.5 -99.0000 0 6.300 274.6 0 6.74 0 9.61 0 0.878 0 19 19 75.6 7.7940 65.4 0.480 32.5693 5.93 258.2 241 303 11.9 -99.0000 0 5.949 259.2 6 14.81 0 17.08 0 1.309 0 18 18 100.1 7.1086 66.5 0.177 32.7946 5.60 243.7 241 302 11.1 -99.0000 0 5.635 245.4 0 18.47 6 22.02 6 1.510 6 17 17 125.1 6.9203 66.7 0.112 33.0133 5.18 225.4 241 301 11.0 -99.0000 0 5.212 227.0 0 21.27 0 25.80 0 1.652 0 16 16 150.7 6.9732 66.8 0.088 33.4045 4.34 188.7 241 300 10.9 -99.0000 0 4.382 190.8 0 25.04 0 31.72 0 1.834 0 15 15 175.5 6.9732 66.7 0.084 33.6347 4.05 176.2 241 299 10.9 -99.0000 0 4.086 177.8 0 25.54 0 34.58 0 1.875 0 14 14 200.8 6.8366 66.6 0.081 33.8043 3.56 154.8 241 298 10.6 -99.0000 0 3.603 156.8 0 28.29 0 39.84 0 2.005 0 13 13 249.8 6.3927 66.7 0.077 33.8914 2.81 122.1 241 297 10.4 -99.0000 0 2.853 124.1 6 32.37 0 49.60 0 2.283 0 12 12 300.6 5.6802 66.8 0.073 33.8989 2.46 106.7 241 296 9.8 -99.0000 0 2.516 109.5 0 35.03 0 58.91 0 2.452 0 11 11 401.1 5.0955 67.4 0.063 34.0012 1.23 53.6 241 295 9.5 -99.0000 0 1.255 54.6 0 40.90 0 75.75 0 2.860 0 10 10 600.4 4.3499 67.6 0.063 34.1194 0.59 25.7 241 294 9.0 -99.0000 0 0.562 24.4 0 44.23 0 97.64 0 3.103 0 9 9 800.1 3.9375 67.6 0.061 34.2898 0.23 9.8 241 293 8.8 -99.0000 0 0.231 10.0 0 45.50 0 116.25 0 3.267 0 8 8 1000.9 3.3728 67.6 1.904 34.3720 0.23 9.8 241 292 8.2 34.3740 6 0.230 10.0 6 46.05 0 133.00 0 3.274 0 7 7 1250.1 2.8223 67.6 0.061 34.4520 0.37 16.2 241 291 8.0 34.4550 0 0.405 17.6 0 46.43 0 149.45 0 3.245 0 6 6 1500.2 2.4161 67.7 0.061 34.5077 0.62 27.1 241 290 7.4 34.5108 0 0.649 28.2 3 45.84 0 160.67 0 3.181 0 5 5 2001.1 1.9999 67.7 0.061 34.5768 1.24 53.7 241 289 7.4 34.5781 6 1.272 55.3 0 44.21 6 170.59 36 3.042 6 4 4 2499.9 1.7588 67.7 0.060 34.6221 1.82 79.2 241 288 7.3 34.6192 0 1.836 79.8 36 42.63 0 174.46 0 2.903 0 3 3 2999.4 1.6424 67.7 0.059 34.6464 2.25 97.7 241 287 7.3 34.6488 0 2.317 100.7 0 41.32 0 175.61 0 2.816 0 2 2 2999.4 1.6424 67.7 0.059 34.6463 2.25 97.7 69 286 7.6 34.6477 6 2.284 99.3 0 41.46 0 175.75 0 2.824 0 1 1 3274.6 1.6659 67.5 0.059 34.6470 2.26 98.3 241 285 8.4 -99.0000 0 2.317 100.7 0 41.53 0 176.11 0 2.831 0