*2014/08/05 16:51:46.06 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2014/03/07 22:19:26.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 93 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : DEB4A3F5 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4 96 2 Temperature:Secondary 'deg C (ITS90)' 7.5033 7.7494 3 Fluorescence:URU:Wetlabs mg/m^3 0.595 0.994 4 pH:SBE:Nominal n/a 8.918 9.006 5 Salinity:T1:C1 PSS-78 30.8878 31.9752 6 Oxygen:Dissolved:SBE mL/L 5.112 5.723 7 Oxygen:Dissolved:SBE umol/kg 222.6557 249.4832 8 Number_of_bin_records n/a 12 62 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2014-16\Pro $END *ADMINISTRATION MISSION : 2014-16 AGENCY : PBS, Salmon and Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : 'Juan de Fuca Strait, Strait of Georgia, Johnstone' CONTINUED : ' Strait' STATION : JF 05 EVENT NUMBER : 13 LATITUDE : 48 27.97000 N ! (deg min) LONGITUDE : 124 20.57000 W ! (deg min) WATER DEPTH : 107 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2710 Conductivity ' ' 2128 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 2374 Conductivity:2 ' ' 3396 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/07/28 13:35:45 11669 11669 CLEAN 5.1 2014/07/28 15:13:12 11669 11669 SHIFTDAT 3.4 2014/07/28 16:28:37 11669 11669 SHIFTDAT 3.4 2014/07/28 16:52:39 11669 11669 SHIFTDAT 3.4 2014/07/28 17:36:48 11669 11669 DELETE 6.3 2014/07/28 17:46:41 11669 2996 CTDEDIT 5.0.4 2014/07/30 11:54:48 2996 2708 CALIB 11.8 2014/07/31 17:18:24 2708 2708 FILTERS 4.3 2014/07/31 17:21:36 2708 2708 BINAVE 4.1.1 2014/07/31 17:22:36 2708 93 REMOVECH 8.2 2014/07/31 17:31:15 93 93 CHGUNITS 3.1 2014/07/31 17:37:40 93 93 REORDER 1.3 2014/07/31 17:39:03 ? ? HDREDIT2 2.6 2014/08/05 16:51:46 ? ? $END $REMARKS -CLEAN functions: 2014/07/28 15:13:12 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.90 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 30.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 85.70 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/07/30 11:54:48 288 records were deleted in this editing session. No data values were changed. -CALIB parameters: 2014/07/31 17:18:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2014-16\Processing\doc\2014-16-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 12 Salinity:T0:C0 PSS-78 10 0.1200000E-02 0.1000000E+01 14 Oxygen:Dissolved:SBE mL/L 10 0.1420000E-01 0.1050200E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/07/31 17:31:15 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: Temperature reference channel: Tem* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/08/05 16:51:46 Applied edit header: P:\Cruise_Data_Processing\2014-16\Processing\doc\2014-16-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2014-16\2014-16-0013.hex Software Version Seasave V 7.22.4 Temperature SN = 2710 Conductivity SN = 2128 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 07 2014 22:17:27 NMEA Latitude = 48 27.97 N NMEA Longitude = 124 20.57 W NMEA UTC (Time) = Mar 07 2014 22:19:26 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2014-16 Station: JF 05 Depth(m): 107 System UTC = Mar 07 2014 22:17:27 # nquan = 15 # nvalues = 11669 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = dz/dtM: Descent Rate [m/s] # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 0.5 # name 14 = flag: flag # span 0 = 1, 11669 # span 1 = 0.696, 95.704 # span 2 = 7.5024, 8.6618 # span 3 = 7.5025, 8.8824 # span 4 = 0.038079, 3.301777 # span 5 = 0.026722, 3.301934 # span 6 = 0.0293, 1.1405 # span 7 = 1.6654, 2.1441 # span 8 = 7.794, 9.040 # span 9 = 0, 1 # span 10 = -1.859, 1.334 # span 11 = 0.2696, 31.9753 # span 12 = 0.1854, 31.9763 # span 13 = 4.81269, 8.17224 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 07 2014 22:19:26 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2710 # 31-Jan-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36715380e-003 # 6.46576903e-004 # 2.33953737e-005 # 2.19507139e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Jan-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.02028018e+001 # 1.46419864e+000 # -3.32636380e-003 # 3.25151678e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0550 # 25-Mar-13 # -4.232943e+004 # 1.065076e-001 # 1.464900e-002 # 3.694200e-002 # 0.000000e+000 # 3.041883e+001 # -3.536199e-004 # 4.388420e-006 # 2.583800e-009 # 0.99988778 # -0.12341 # 0.000000e+000 # 1.286170e-002 # -9.445820e+000 # # # # # # 2374 # 31-Jan-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34913123e-003 # 6.45506956e-004 # 2.32986392e-005 # 2.17320090e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3396 # 30-Jan-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.92108035e+000 # 1.31524483e+000 # -2.66264865e-004 # 8.33352189e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1176 # 05-Mar-13 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 6.2702e-001 # -0.5178 # -3.7667e-003 # 1.4548e-004 # -2.8367e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.7500e-002 # 2.2100 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # # 1.30000000e+001 # # 0.0185 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = Jul 28 2014 09:55:45, 7.22.5 [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2014-16\RAW\CTD\2014-16-0013.hex P:\Crui se_Data_Processing\2014-16\Processing\doc\2014-16-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Jul 28 2014 09:57:10, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2014-16\Processing\convert\2014-16-001 3.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Jul 28 2014 11:29:19, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2014-16\Processing\wildedit\2014-16-00 13.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Jul 28 2014 13:29:48, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2014-16\Processing\align\2014-16-0013.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Jul 28 2014 13:31:08, 7.22.5 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2014-16\Processing\celltm\2014-16-0013.c nv P:\Cruise_Data_Processing\2014-16\Processing\doc\2014-16-ctd.XMLCON # derive_time_window_docdt = seconds: 0.5 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records for which the pumps were not turned on and a few records corrupted by shed wakes. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Fluorescence and pH data are nominal and unedited except that some records were removed in editing temperature and salinity. Dissolved oxygen was calibrated using the results of cruise 2014-01 when the same sensor was used. There was no calibration sampling from this cruise. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. The primary CTD salinity channel was used for event #144, so it was recalibrated to match the secondary channel which was selected for all other casts. For details on the processing see the report: 2014-16_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.12E-02 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.142E-01 1.0502) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 4.0 7.7494 0.644 9.005 30.8878 5.72 249.5 22 5.0 7.7478 0.656 9.006 30.8919 5.71 248.8 60 6.0 7.7326 0.720 9.004 30.9238 5.69 248.0 28 7.0 7.7212 0.783 9.003 30.9509 5.68 247.8 29 8.0 7.7242 0.824 9.002 30.9483 5.68 247.7 28 9.0 7.7268 0.870 9.003 30.9450 5.67 247.3 31 10.0 7.7125 0.892 9.003 30.9590 5.67 246.9 25 11.0 7.7087 0.896 9.001 30.9667 5.67 247.0 27 12.0 7.7051 0.905 9.000 30.9723 5.67 247.0 32 13.0 7.7058 0.937 9.000 30.9714 5.67 246.9 34 14.0 7.6954 0.904 8.999 30.9920 5.66 246.7 28 15.0 7.6996 0.882 8.999 30.9835 5.66 246.7 24 16.0 7.6988 0.866 8.999 30.9847 5.65 246.2 22 17.0 7.6939 0.848 8.999 30.9964 5.62 244.8 21 18.0 7.6840 0.862 8.997 31.0177 5.64 245.8 22 19.0 7.6731 0.872 8.996 31.0326 5.65 246.1 22 20.0 7.6651 0.929 8.994 31.0393 5.66 246.5 28 21.0 7.6726 0.994 8.995 31.0322 5.64 246.0 30 22.0 7.6670 0.943 8.993 31.0474 5.63 245.4 31 23.0 7.6619 0.976 8.993 31.0581 5.61 244.4 29 24.0 7.6585 0.968 8.991 31.0864 5.61 244.3 26 25.0 7.6536 0.968 8.989 31.1166 5.60 244.1 29 26.0 7.6439 0.964 8.987 31.1479 5.61 244.3 27 27.0 7.6592 0.862 8.988 31.0976 5.60 244.0 21 28.0 7.6582 0.863 8.988 31.1071 5.57 242.6 19 29.0 7.6504 0.900 8.987 31.1368 5.56 242.2 19 30.0 7.6467 0.885 8.986 31.1437 5.52 240.6 21 31.0 7.6189 0.871 8.982 31.2339 5.51 240.1 26 32.0 7.6041 0.842 8.977 31.2827 5.49 239.4 41 33.0 7.5882 0.823 8.973 31.3133 5.48 238.7 45 34.0 7.5718 0.819 8.970 31.3586 5.42 236.3 29 35.0 7.5478 0.803 8.965 31.4529 5.39 235.0 18 36.0 7.5317 0.780 8.962 31.5207 5.38 234.4 19 37.0 7.5257 0.768 8.958 31.5491 5.37 233.9 20 38.0 7.5063 0.763 8.954 31.6489 5.36 233.5 22 39.0 7.5033 0.729 8.952 31.6702 5.36 233.6 27 40.0 7.5074 0.720 8.950 31.6865 5.37 233.8 32 41.0 7.5105 0.709 8.947 31.6938 5.36 233.4 34 42.0 7.5140 0.696 8.947 31.7148 5.36 233.5 32 43.0 7.5183 0.702 8.945 31.7268 5.36 233.5 30 44.0 7.5203 0.706 8.944 31.7328 5.34 232.8 29 45.0 7.5221 0.730 8.943 31.7427 5.34 232.5 28 46.0 7.5265 0.716 8.942 31.7727 5.32 231.6 26 47.0 7.5286 0.719 8.939 31.8046 5.31 231.4 23 48.0 7.5302 0.688 8.939 31.8088 5.31 231.4 23 49.0 7.5277 0.697 8.937 31.8142 5.29 230.2 23 50.0 7.5243 0.703 8.937 31.8251 5.27 229.4 27 51.0 7.5305 0.685 8.937 31.8508 5.24 228.2 33 52.0 7.5285 0.660 8.933 31.8633 5.23 228.0 33 53.0 7.5241 0.642 8.931 31.8752 5.24 228.3 28 54.0 7.5187 0.642 8.932 31.8869 5.24 228.1 27 55.0 7.5191 0.655 8.931 31.8936 5.19 226.0 27 56.0 7.5232 0.633 8.930 31.9085 5.18 225.6 26 57.0 7.5259 0.625 8.927 31.9262 5.16 224.9 21 58.0 7.5267 0.620 8.927 31.9383 5.16 224.9 25 59.0 7.5270 0.613 8.927 31.9388 5.17 225.1 24 60.0 7.5271 0.609 8.924 31.9422 5.16 224.5 26 61.0 7.5272 0.616 8.925 31.9489 5.17 225.1 33 62.0 7.5272 0.610 8.923 31.9485 5.13 223.4 40 63.0 7.5272 0.612 8.923 31.9526 5.13 223.3 25 64.0 7.5272 0.608 8.922 31.9573 5.15 224.2 25 65.0 7.5273 0.622 8.922 31.9624 5.14 223.8 22 66.0 7.5274 0.607 8.922 31.9656 5.12 222.9 23 67.0 7.5275 0.595 8.922 31.9664 5.12 222.9 23 68.0 7.5276 0.600 8.922 31.9664 5.12 223.0 26 69.0 7.5278 0.610 8.922 31.9668 5.14 223.7 34 70.0 7.5279 0.618 8.922 31.9678 5.14 223.9 39 71.0 7.5280 0.617 8.922 31.9685 5.14 224.1 30 72.0 7.5280 0.611 8.921 31.9685 5.13 223.6 25 73.0 7.5281 0.609 8.921 31.9683 5.13 223.6 22 74.0 7.5279 0.605 8.921 31.9714 5.14 223.7 25 75.0 7.5283 0.622 8.921 31.9695 5.14 223.7 27 76.0 7.5286 0.640 8.922 31.9685 5.13 223.7 30 77.0 7.5288 0.615 8.921 31.9679 5.13 223.4 32 78.0 7.5288 0.610 8.922 31.9676 5.14 223.7 29 79.0 7.5289 0.608 8.921 31.9680 5.13 223.7 26 80.0 7.5288 0.602 8.921 31.9689 5.13 223.4 24 81.0 7.5288 0.616 8.919 31.9695 5.13 223.4 25 82.0 7.5290 0.603 8.920 31.9692 5.13 223.3 26 83.0 7.5288 0.624 8.920 31.9707 5.12 222.9 27 84.0 7.5292 0.610 8.920 31.9702 5.13 223.4 28 85.0 7.5289 0.610 8.920 31.9716 5.12 223.1 30 86.0 7.5287 0.617 8.918 31.9730 5.12 222.9 27 87.0 7.5287 0.617 8.920 31.9734 5.12 223.2 28 88.0 7.5286 0.610 8.919 31.9739 5.13 223.4 23 89.0 7.5286 0.617 8.918 31.9740 5.11 222.7 24 90.0 7.5287 0.622 8.919 31.9737 5.12 222.9 35 91.0 7.5287 0.617 8.919 31.9740 5.12 223.0 61 92.0 7.5289 0.619 8.919 31.9735 5.12 223.1 52 93.0 7.5289 0.620 8.919 31.9735 5.12 222.9 61 94.0 7.5288 0.621 8.918 31.9747 5.12 223.0 62 95.0 7.5289 0.617 8.919 31.9752 5.11 222.7 45 96.0 7.5290 0.601 8.919 31.9746 5.12 222.9 12