*2014/07/16 09:39:55.37 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2014/02/22 14:40:11.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 16 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 61E64445 NUMBER OF CHANNELS : 11 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 16 2 Bottle_Number n/a 1 16 3 Pressure decibar 9.942 2001.081 4 Temperature:Secondary 'deg C (ITS90)' 1.9441 8.129 5 Transmissivity %/metre 63.2 68.6 6 Fluorescence:URU:Wetlabs mg/m^3 0.106 1.092 7 Salinity:T1:C1 PSS-78 32.4228 34.5907 8 Oxygen:Dissolved:SBE mL/L 0.243 6.66 9 Oxygen:Dissolved:SBE umol/kg 10.6 290 10 Number_of_bin_records n/a 36 241 11 Sample_Number n/a 595 610 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 $END $REMARKS Data quality is expressed with the following flags: ---------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2014-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P12 EVENT NUMBER : 72 LATITUDE : 48 58.11000 N ! (deg min) LONGITUDE : 130 39.96000 W ! (deg min) WATER DEPTH : 3232 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2710 Conductivity ' ' 2128 'Pressure:Digiquartz with TC' ' ' 0550 Temperature:2 ' ' 2374 Conductivity:2 ' ' 3396 Fluorometer:Seapoint ' ' 2356 'Oxygen:SBE 43' ' ' 1176 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 PAR/Irradiance:Biospherical/Licor ' ' 4615 Altimeter ' ' 1204 'Transmissometer:WET Labs C-Star' ' ' 1396DR $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/05/29 16:30:24 1431 1431 CLEAN 5.1 2014/05/29 16:31:12 ? ? ADDSAMP 3.6 2014/05/30 09:02:03 1431 1431 BINAVE 4.1.1 2014/05/30 09:02:26 1431 16 MERGE 3.5 2014/06/13 10:42:56 16 16 CLEAN 5.1 2014/06/13 10:52:12 16 16 CALIB 11.8 2014/06/13 10:52:26 16 16 SORT 3.6 2014/06/13 10:52:47 16 16 REMOVECH 8.2 2014/06/13 10:53:08 16 16 CHGUNITS 3.1 2014/06/13 10:53:56 16 16 CHGUNITS 3.1 2014/06/13 10:54:14 16 16 REORDER 1.3 2014/06/13 10:54:33 ? ? HDREDIT2 2.6 2014/07/16 09:39:55 ? ? $END $REMARKS -CLEAN functions: 2014/05/29 16:30:41 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2014-01\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2014/06/13 10:42:56 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2014-01\Processing\hydro\2014-01-0072.samavg Secondary file: P:\Cruise_Data_Processing\2014-01\Processing\hydro\2014-01-0072.mrgcln1s -SORT parameters: 2014/06/03 15:29:08 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2014/06/13 10:52:11 20 Reset #RECS, MIN & MAX values in header. Insert Pad Values in Channel: Fluorescence:URU:Wetlabs:ECO-AFL [mg/m^3] where channel Fluorescence:URU:Wetlabs:ECO-AFL [mg/m^3] is in the range -100 0 data records in pad range. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2014/06/13 10:52:26 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2014-01\Processing\doc\2014-01-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Salinity:T0:C0 PSS-78 11 0.1500000E-02 0.6000000E-06 Pressure 15 Oxygen:Dissolved:SBE mL/L 10 0.1420000E-01 0.1050200E+01 -SORT parameters: 2014/06/13 10:52:47 Sorted in ascending order of channel Pressure* -REMOVECH 2014/06/13 10:53:08 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Fluorescence:URU:Seapoint [mg/m^3] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Altimeter [metres] Status:Pump Flag -CHANGE units: Temperature reference channel: Temperature:* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Sal* - No units changed -HEADER EDITS: 2014/07/16 09:39:55 Applied edit header: P:\Cruise_Data_Processing\2014-01\Processing\doc\HYDRO\2014-01-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer calibrated annually with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed in room 1310 at IOS. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2014-01CHL*.xls. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2014-01OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 33 to 45 days after collection. For details including a duplicate analysis, see document QF2014-01SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For details see document QF2014-01nuts*.xls. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2014-01 DMS report.doc and for data see "DMS summary (2014-01 data)*.xls." References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Dissolved oxygen was calibrated using the method described in SeaBird Application Note #64-2, June 2012 revision, except that a small offset in the fit was allowed. The Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.8mL/L from 0 to 100db ±0.6mL/L from 100db to 300db ±0.2mL/L from 300db to 800db ±0.05mL/L below 800db The primary CTD salinity channel was used for events #41 and 43, so it was recalibrated to bring it into line with the secondary channel which was selected for all other casts. For details on the processing see document: 2014-01_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 11 -99 (Pressure) (0.15E-02 0.6E-06) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.142E-01 1.0502) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp !tt tt re ure: missi cence: :T1:C1 : n: er_o le_ !~u ~u Secondar vity URU: Dissol Disso ~bin Numb !en mb y Wetlabs ved: lved: _rec er !ce er SBE SBE ords !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- *END OF HEADER 13 13 9.9 8.1286 63.2 1.092 32.4229 6.66 290.0 41 607 14 14 10.1 8.1290 63.3 1.078 32.4228 6.66 290.0 39 608 16 16 10.2 8.1283 63.3 1.067 32.4228 6.65 289.7 241 610 15 15 10.3 8.1288 63.3 1.018 32.4230 6.66 289.8 38 609 9 9 500.2 4.3230 68.5 0.109 34.0530 0.97 42.3 40 603 10 10 500.3 4.3227 68.4 0.109 34.0532 0.98 42.5 39 604 11 11 500.4 4.3225 68.4 0.119 34.0533 0.98 42.5 38 605 12 12 500.5 4.3227 68.4 0.114 34.0533 0.98 42.5 241 606 5 5 1000.3 3.3160 68.4 0.119 34.3689 0.24 10.6 42 599 7 7 1000.6 3.3158 68.4 0.113 34.3692 0.24 10.6 38 601 8 8 1000.6 3.3170 68.4 0.114 34.3691 0.24 10.6 241 602 6 6 1000.8 3.3163 68.4 0.115 34.3691 0.24 10.6 40 600 4 4 2000.0 1.9441 68.6 0.108 34.5906 1.35 58.9 241 598 1 1 2000.5 1.9444 68.6 0.106 34.5904 1.35 58.8 39 595 3 3 2000.6 1.9441 68.6 0.108 34.5906 1.36 59.0 36 597 2 2 2001.1 1.9443 68.6 0.108 34.5907 1.35 58.9 37 596