*2014/05/20 14:40:56.75 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/10/18 01:12:24.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 74 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : FBC781E7 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4 77 2 Temperature:Secondary 'deg C (ITS90)' 7.4939 12.4941 3 Fluorescence:URU:Wetlabs mg/m^3 0.16 6.156 4 pH:SBE:Nominal n/a 8.904 9.39 5 Salinity:T1:C1 PSS-78 31.8916 33.4346 6 Oxygen:Dissolved:SBE mL/L 2.528 6.607 7 Oxygen:Dissolved:SBE umol/kg 109.9847 288.0187 8 Number_of_bin_records n/a 7 37 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-65\Pro $END *ADMINISTRATION MISSION : 2013-65 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Coast of Vancouver Island STATION : VI 05 EVENT NUMBER : 37 LATITUDE : 48 31.58000 N ! (deg min) LONGITUDE : 125 51.67000 W ! (deg min) WATER DEPTH : 85 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2038 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 4883 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/05/08 17:05:31 5534 5534 CLEAN 5.1 2014/05/08 17:08:29 5534 5534 SHIFTDAT 3.4 2014/05/09 14:40:16 5534 5534 SHIFTDAT 3.4 2014/05/09 15:24:56 5534 5534 SHIFTDAT 3.4 2014/05/09 15:27:06 5534 5534 DELETE 6.3 2014/05/09 15:32:40 5534 1851 CTDEDIT 5.0.4 2014/05/12 13:50:31 1851 1759 CALIB 11.8 2014/05/14 16:13:00 1759 1759 FILTERS 4.3 2014/05/14 16:17:39 1759 1759 BINAVE 4.1.1 2014/05/14 16:19:33 1759 74 REMOVECH 8.2 2014/05/14 16:20:21 74 74 CHGUNITS 3.1 2014/05/14 16:24:13 74 74 REORDER 1.3 2014/05/14 17:02:37 ? ? HDREDIT2 2.6 2014/05/20 14:40:56 ? ? $END $REMARKS -CLEAN functions: 2014/05/08 17:08:11 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.20 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 75.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 67.17 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/05/12 13:50:31 92 records were deleted in this editing session. 51 changes in channel Salinity:T1:C1 -CALIB parameters: 2014/05/14 16:13:00 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/05/14 16:20:21 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperatur* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/05/20 14:40:56 Applied edit header: P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-65\2013-65-037.hex Software Version Seasave V 7.22.4 Temperature SN = 2038 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 18 2013 02:12:33 NMEA Latitude = 48 31.58 N NMEA Longitude = 125 51.67 W NMEA UTC (Time) = Oct 18 2013 01:12:24 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-65 Station: VI 05 Depth(m): 85 System UTC = Oct 18 2013 01:12:33 # nquan = 15 # nvalues = 5534 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 0.5 # name 13 = dz/dtM: Descent Rate [m/s], WS = 0.5 # name 14 = flag: flag # span 0 = 1, 5534 # span 1 = 2.316, 77.174 # span 2 = 7.4925, 12.4971 # span 3 = 7.4933, 12.4979 # span 4 = 3.433473, 3.724037 # span 5 = 3.433325, 3.723923 # span 6 = 0.0790, 18.2060 # span 7 = 1.3150, 2.8425 # span 8 = 8.898, 9.394 # span 9 = 0, 1 # span 10 = 31.8838, 33.4387 # span 11 = 31.8674, 33.4362 # span 12 = 2.50990, 6.64260 # span 13 = -1.815, 2.663 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 18 2013 01:12:24 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 31-Dec-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34114478e-003 # 6.27604357e-004 # 1.92175718e-005 # 1.36370000e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 01-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22314873e+000 # 5.07768024e-001 # -5.15940128e-004 # 5.09668877e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 30-Dec-13 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 01-Jan-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38017391e-003 # 6.40020208e-004 # 2.12586690e-005 # 1.76262755e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62060268e+000 # 1.47483016e+000 # -1.36190582e-003 # 1.93968125e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 03-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7181e-001 # -0.5187 # -2.2511e-003 # 1.3917e-004 # -2.6436e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = May 08 2014 16:34:50, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-65\RAW\CTD\2013-65-0037.hex P:\Crui se_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = May 08 2014 16:37:25, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-65\Processing\convert\2013-65-003 7.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 08 2014 16:38:40, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-65\Processing\wildedit\2013-65-00 37.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = May 08 2014 17:00:02, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-65\Processing\align\2013-65-0037.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 08 2014 17:03:12, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-65\Processing\celltm\2013-65-0037.c nv P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # derive_time_window_docdt = seconds: 0.5 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 0.5 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- The Fluorescence:URU:Wetlabs data are nominal and unedited except that some records were removed in editing temperature and salinity. The only calibration sampling was from about 10m, so recalibration could not be based on that information. Since there were post-cruise calibrations available, those parameters were used in processing the pressure, temperature, conductivity and dissolved oxygen sensor data. The factory calibrations of the temperature and conductivity sensors in January 2014 imply that there was no significant drift in secondary salinity since the previous factory service. No recalibration was applied to the secondary salinity. For events #7 and 16 the primary salinity was used: that channel was recalibrated based on how it compared with the secondary salinity. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. The data are unedited except that some records were removed in editing temperature and salinity. For details on the processing see processing report: 2013-65-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 4.0 12.4932 3.020 9.388 31.8916 6.61 288.0 19 5.0 12.4941 3.078 9.389 31.8916 6.57 286.3 34 6.0 12.4929 3.174 9.390 31.8927 6.40 279.1 26 7.0 12.4653 3.231 9.385 31.9056 6.22 271.0 22 8.0 12.3938 3.184 9.377 31.9220 6.04 263.1 21 9.0 12.1931 3.399 9.368 31.9197 5.86 255.5 22 10.0 11.9882 3.936 9.353 31.8967 5.87 256.0 23 11.0 11.9260 3.770 9.336 31.9236 6.00 261.4 28 12.0 11.5792 4.121 9.329 32.0056 5.78 252.0 29 13.0 11.8236 6.156 9.313 32.1286 5.37 234.2 25 14.0 11.7282 5.575 9.295 32.1560 5.06 220.4 23 15.0 11.5750 3.517 9.274 32.1982 4.85 211.3 22 16.0 11.3447 2.259 9.254 32.2576 4.75 207.0 25 17.0 10.9652 1.518 9.240 32.3555 4.73 206.2 30 18.0 10.8220 1.271 9.227 32.3924 4.68 204.1 33 19.0 10.7992 1.278 9.211 32.3990 4.65 202.7 31 20.0 10.7483 1.156 9.203 32.4154 4.64 202.3 22 21.0 10.7320 1.153 9.199 32.4226 4.61 200.9 19 22.0 10.7355 1.122 9.195 32.4217 4.57 199.0 18 23.0 10.7341 1.128 9.193 32.4234 4.52 196.9 19 24.0 10.7119 1.120 9.191 32.4323 4.46 194.2 22 25.0 10.6871 1.060 9.186 32.4418 4.41 192.2 25 26.0 10.6391 1.058 9.182 32.4572 4.38 191.0 24 27.0 10.5953 1.073 9.177 32.4703 4.35 189.4 25 28.0 10.5657 1.081 9.173 32.4795 4.27 185.8 25 29.0 10.5565 0.959 9.170 32.4828 4.11 178.9 26 30.0 10.5265 0.962 9.163 32.4918 3.98 173.2 23 31.0 10.3930 0.864 9.156 32.5288 3.87 168.6 21 32.0 10.2478 0.712 9.146 32.5710 3.79 165.1 23 33.0 10.1268 0.689 9.133 32.6027 3.70 161.0 24 34.0 9.9857 0.570 9.119 32.6414 3.61 157.0 23 35.0 9.9100 0.543 9.110 32.6668 3.52 153.2 20 36.0 9.8466 0.535 9.104 32.6869 3.42 149.1 20 37.0 9.7790 0.512 9.093 32.7113 3.39 147.5 22 38.0 9.7022 0.475 9.084 32.7360 3.40 148.3 24 39.0 9.4983 0.439 9.075 32.7892 3.40 147.9 24 40.0 9.1953 0.419 9.066 32.8432 3.38 147.1 22 41.0 8.9746 0.391 9.058 32.8707 3.35 145.7 24 42.0 8.7961 0.382 9.052 32.9229 3.25 141.7 30 43.0 8.6949 0.318 9.039 32.9498 3.03 132.1 28 44.0 8.5808 0.319 9.022 32.9777 2.89 125.7 21 45.0 8.3069 0.280 9.011 33.0805 2.80 121.7 18 46.0 8.2444 0.255 9.000 33.1089 2.76 120.3 20 47.0 8.1842 0.213 8.986 33.1344 2.74 119.3 22 48.0 8.0557 0.206 8.972 33.1867 2.73 119.0 24 49.0 8.0011 0.196 8.961 33.2077 2.73 119.0 22 50.0 7.9917 0.178 8.954 33.2122 2.74 119.2 20 51.0 7.9875 0.194 8.949 33.2154 2.72 118.5 23 52.0 7.9831 0.325 8.945 33.2194 2.70 117.5 29 53.0 7.9755 0.195 8.939 33.2255 2.70 117.5 36 54.0 7.9657 0.176 8.934 33.2337 2.72 118.5 25 55.0 7.9490 0.198 8.934 33.2404 2.74 119.4 14 56.0 7.9219 0.180 8.934 33.2476 2.75 119.6 17 57.0 7.8983 0.184 8.932 33.2562 2.75 119.8 19 58.0 7.8507 0.177 8.932 33.2724 2.76 120.1 21 59.0 7.8370 0.196 8.932 33.2761 2.77 120.4 25 60.0 7.8324 0.177 8.933 33.2780 2.77 120.8 24 61.0 7.8155 0.181 8.933 33.2819 2.77 120.5 23 62.0 7.7673 0.187 8.934 33.2978 2.76 120.3 24 63.0 7.7403 0.177 8.934 33.3101 2.76 120.0 32 64.0 7.7112 0.175 8.932 33.3212 2.73 119.0 32 65.0 7.7034 0.184 8.931 33.3242 2.71 117.7 21 66.0 7.6849 0.178 8.928 33.3320 2.68 116.6 18 67.0 7.6459 0.176 8.927 33.3476 2.66 115.7 15 68.0 7.6378 0.160 8.929 33.3513 2.63 114.6 16 69.0 7.6255 0.169 8.927 33.3574 2.63 114.3 18 70.0 7.5852 0.168 8.925 33.3782 2.61 113.7 26 71.0 7.5629 0.177 8.922 33.3910 2.61 113.4 37 72.0 7.5594 0.186 8.918 33.3934 2.59 112.6 32 73.0 7.5481 0.166 8.916 33.4005 2.56 111.4 26 74.0 7.5392 0.195 8.912 33.4063 2.54 110.4 27 75.0 7.5105 0.169 8.909 33.4248 2.53 110.1 28 76.0 7.4946 0.174 8.908 33.4340 2.53 110.0 22 77.0 7.4939 0.169 8.904 33.4346 2.53 110.2 7