*2014/05/20 14:40:56.39 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/10/16 23:16:50.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 89 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : F731DE71 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4 92 2 Temperature:Primary 'deg C (ITS90)' 7.2296 10.1105 3 Fluorescence:URU:Wetlabs mg/m^3 0.181 2.25 4 pH:SBE:Nominal n/a 8.896 9.035 5 Salinity:T0:C0 PSS-78 31.6293 33.673 6 Oxygen:Dissolved:SBE mL/L 1.954 4.273 7 Oxygen:Dissolved:SBE umol/kg 84.99324 186.2328 8 Number_of_bin_records n/a 2 55 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-65\Pro $END *ADMINISTRATION MISSION : 2013-65 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Coast of Vancouver Island STATION : JF 06 EVENT NUMBER : 16 LATITUDE : 48 31.21000 N ! (deg min) LONGITUDE : 124 30.62000 W ! (deg min) WATER DEPTH : 99 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2038 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 4883 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/05/08 17:05:21 6208 6208 CLEAN 5.1 2014/05/08 17:08:17 6208 6208 SHIFTDAT 3.4 2014/05/09 14:40:06 6208 6208 SHIFTDAT 3.4 2014/05/09 15:24:44 6208 6208 SHIFTDAT 3.4 2014/05/09 15:26:54 6208 6208 DELETE 6.3 2014/05/09 15:32:32 6208 2345 CTDEDIT 5.0.4 2014/05/12 12:03:58 2345 2153 CALIB 11.8 2014/05/14 16:12:56 2153 2153 FILTERS 4.3 2014/05/14 16:17:34 2153 2153 BINAVE 4.1.1 2014/05/14 16:19:30 2153 89 REMOVECH 8.2 2014/05/14 17:15:35 89 89 CHGUNITS 3.1 2014/05/14 17:16:11 89 89 REORDER 1.3 2014/05/14 17:16:18 ? ? HDREDIT2 2.6 2014/05/20 14:40:56 ? ? $END $REMARKS -CLEAN functions: 2014/05/08 17:08:11 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.20 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 75.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 82.49 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/05/12 12:03:58 192 records were deleted in this editing session. 40 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/05/14 16:12:56 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/05/14 17:15:35 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperatur* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/05/20 14:40:56 Applied edit header: P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-65\2013-65-016.hex Software Version Seasave V 7.22.4 Temperature SN = 2038 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 17 2013 00:16:15 NMEA Latitude = 48 31.21 N NMEA Longitude = 124 30.62 W NMEA UTC (Time) = Oct 16 2013 23:16:50 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-65 Station: JF 06 Depth(m): 99 System UTC = Oct 16 2013 23:16:15 # nquan = 15 # nvalues = 6208 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 0.5 # name 13 = dz/dtM: Descent Rate [m/s], WS = 0.5 # name 14 = flag: flag # span 0 = 1, 6208 # span 1 = 1.922, 92.486 # span 2 = 7.1994, 10.2091 # span 3 = 7.1994, 10.3610 # span 4 = 3.431761, 3.494825 # span 5 = 3.431562, 3.525213 # span 6 = 0.0949, 6.9679 # span 7 = 1.1453, 1.9756 # span 8 = 8.885, 9.044 # span 9 = 0, 1 # span 10 = 31.6089, 33.6961 # span 11 = 31.6067, 33.6933 # span 12 = 1.94467, 4.38853 # span 13 = -1.933, 2.400 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 16 2013 23:16:50 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 31-Dec-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34114478e-003 # 6.27604357e-004 # 1.92175718e-005 # 1.36370000e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 01-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22314873e+000 # 5.07768024e-001 # -5.15940128e-004 # 5.09668877e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 30-Dec-13 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 01-Jan-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38017391e-003 # 6.40020208e-004 # 2.12586690e-005 # 1.76262755e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62060268e+000 # 1.47483016e+000 # -1.36190582e-003 # 1.93968125e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 03-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7181e-001 # -0.5187 # -2.2511e-003 # 1.3917e-004 # -2.6436e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = May 08 2014 16:34:44, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-65\RAW\CTD\2013-65-0016.hex P:\Crui se_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = May 08 2014 16:37:23, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-65\Processing\convert\2013-65-001 6.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 08 2014 16:38:37, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-65\Processing\wildedit\2013-65-00 16.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = May 08 2014 16:59:59, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-65\Processing\align\2013-65-0016.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 08 2014 17:03:09, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-65\Processing\celltm\2013-65-0016.c nv P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # derive_time_window_docdt = seconds: 0.5 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 0.5 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- The Fluorescence:URU:Wetlabs data are nominal and unedited except that some records were removed in editing temperature and salinity. The only calibration sampling was from about 10m, so recalibration could not be based on that information. Since there were post-cruise calibrations available, those parameters were used in processing the pressure, temperature, conductivity and dissolved oxygen sensor data. The factory calibrations of the temperature and conductivity sensors in January 2014 imply that there was no significant drift in secondary salinity since the previous factory service. No recalibration was applied to the secondary salinity. For events #7 and 16 the primary salinity was used: that channel was recalibrated based on how it compared with the secondary salinity. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. The data are unedited except that some records were removed in editing temperature and salinity. For details on the processing see processing report: 2013-65-proc.doc. For this cast the primary temperature and salinity channels were used because the secondary channels were noisy with unstable sections near the surface. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 4.0 10.1105 1.634 9.035 31.6293 4.27 186.2 16 5.0 10.0815 1.896 9.035 31.6328 4.25 185.4 29 6.0 10.0690 1.929 9.034 31.6352 4.22 183.8 29 7.0 10.0041 2.123 9.033 31.6487 4.20 183.1 37 8.0 9.9839 2.188 9.029 31.6588 4.18 182.3 55 9.0 9.9789 2.112 9.026 31.6621 4.15 180.8 42 10.0 9.9749 2.250 9.026 31.6663 4.13 179.8 18 11.0 9.9718 1.969 9.025 31.6713 4.13 179.9 21 12.0 9.9713 1.901 9.024 31.6734 4.12 179.7 21 13.0 9.9694 1.913 9.023 31.6750 4.12 179.6 23 14.0 9.9688 1.890 9.021 31.6765 4.11 179.1 26 15.0 9.9676 1.851 9.022 31.6781 4.10 178.9 31 16.0 9.9666 1.841 9.021 31.6795 4.11 178.9 30 17.0 9.9658 1.858 9.020 31.6800 4.09 178.4 28 18.0 9.9651 1.839 9.020 31.6806 4.08 177.8 28 19.0 9.9637 1.884 9.020 31.6815 4.06 177.1 23 20.0 9.9621 1.874 9.018 31.6829 4.05 176.5 20 21.0 9.9607 1.884 9.017 31.6847 4.05 176.5 20 22.0 9.9570 1.853 9.016 31.6881 4.04 175.9 17 23.0 9.9543 1.917 9.015 31.6900 4.03 175.6 19 24.0 9.9532 1.850 9.016 31.6907 4.02 175.2 20 25.0 9.9499 1.822 9.014 31.6932 4.02 175.1 23 26.0 9.9453 1.753 9.013 31.6961 4.01 174.6 28 27.0 9.9418 1.765 9.012 31.6990 3.99 174.0 38 28.0 9.9386 1.730 9.011 31.7009 3.98 173.3 31 29.0 9.9330 1.688 9.011 31.7031 3.91 170.3 25 30.0 9.9333 1.659 9.008 31.7048 3.84 167.3 22 31.0 9.9327 1.642 9.005 31.7173 3.81 166.1 20 32.0 9.8907 1.469 9.003 31.7526 3.78 164.7 15 33.0 9.8738 1.588 9.001 31.7623 3.74 163.1 19 34.0 9.8745 1.359 8.998 31.7650 3.73 162.5 20 35.0 9.8476 1.425 8.997 31.7736 3.72 162.0 22 36.0 9.8200 1.310 8.994 31.7854 3.72 162.2 25 37.0 9.8166 1.220 8.992 31.7871 3.71 161.8 31 38.0 9.8123 1.254 8.991 31.7884 3.69 160.9 33 39.0 9.8065 1.202 8.990 31.7915 3.69 160.9 29 40.0 9.7953 1.053 8.989 31.8075 3.70 161.2 22 41.0 9.7902 1.101 8.989 31.8258 3.69 160.8 23 42.0 9.7887 0.994 8.988 31.8420 3.70 161.1 23 43.0 9.7823 0.995 8.988 31.8537 3.70 161.4 22 44.0 9.7720 0.931 8.988 31.8721 3.70 161.1 22 45.0 9.7563 0.945 8.988 31.9062 3.66 159.6 22 46.0 9.7484 0.954 8.989 31.9224 3.59 156.3 21 47.0 9.7463 0.967 8.988 31.9237 3.54 154.3 24 48.0 9.7269 0.914 8.985 31.9226 3.52 153.2 25 49.0 9.6993 0.729 8.982 31.9344 3.48 151.5 27 50.0 9.6608 0.705 8.981 31.9820 3.43 149.6 28 51.0 9.6125 0.676 8.979 32.0217 3.36 146.4 29 52.0 9.5721 0.629 8.974 32.0602 3.29 143.4 27 53.0 9.4830 0.598 8.970 32.1318 3.24 141.3 23 54.0 9.4286 0.574 8.967 32.1778 3.21 139.9 20 55.0 9.3637 0.531 8.965 32.2283 3.17 138.1 18 56.0 9.3358 0.507 8.964 32.2506 3.10 135.2 20 57.0 9.3088 0.574 8.961 32.2679 3.04 132.4 21 58.0 9.2592 0.498 8.958 32.3050 2.93 127.6 24 59.0 9.1996 0.399 8.952 32.3514 2.82 122.7 27 60.0 9.1067 0.360 8.945 32.4163 2.76 120.3 25 61.0 8.9493 0.320 8.940 32.5287 2.75 119.6 25 62.0 8.8997 0.282 8.934 32.5612 2.74 119.4 27 63.0 8.8835 0.250 8.931 32.5726 2.71 118.1 27 64.0 8.8481 0.262 8.930 32.5996 2.67 116.0 22 65.0 8.8154 0.262 8.928 32.6233 2.62 114.2 22 66.0 8.7562 0.251 8.927 32.6660 2.58 112.3 21 67.0 8.5778 0.273 8.928 32.7947 2.57 112.0 19 68.0 8.4373 0.262 8.927 32.8970 2.58 112.5 19 69.0 8.3650 0.233 8.928 32.9467 2.61 113.7 19 70.0 8.2614 0.273 8.929 33.0185 2.63 114.3 20 71.0 8.1325 0.269 8.931 33.1048 2.65 115.2 22 72.0 8.0187 0.246 8.933 33.1760 2.67 116.4 26 73.0 7.9525 0.236 8.936 33.2140 2.68 116.5 30 74.0 7.9075 0.233 8.940 33.2360 2.69 116.8 28 75.0 7.8351 0.229 8.944 33.2761 2.67 116.1 24 76.0 7.7564 0.241 8.946 33.3164 2.65 115.4 18 77.0 7.6881 0.208 8.946 33.3506 2.65 115.4 21 78.0 7.6696 0.212 8.947 33.3670 2.60 113.3 20 79.0 7.6575 0.217 8.946 33.3737 2.53 110.0 20 80.0 7.6439 0.192 8.946 33.3806 2.46 107.3 20 81.0 7.6295 0.194 8.942 33.3962 2.41 104.9 20 82.0 7.5919 0.195 8.939 33.4290 2.35 102.3 20 83.0 7.5495 0.207 8.937 33.4573 2.30 100.2 23 84.0 7.5101 0.193 8.933 33.4841 2.24 97.6 28 85.0 7.4516 0.187 8.928 33.5228 2.19 95.5 32 86.0 7.4001 0.224 8.921 33.5563 2.17 94.4 28 87.0 7.3599 0.205 8.916 33.5820 2.14 93.0 23 88.0 7.3522 0.196 8.912 33.5873 2.10 91.2 22 89.0 7.3431 0.209 8.909 33.5940 2.05 89.0 21 90.0 7.3151 0.181 8.904 33.6129 2.00 86.8 25 91.0 7.2698 0.184 8.901 33.6444 1.97 85.7 8 92.0 7.2296 0.190 8.896 33.6730 1.95 85.0 2