*2014/05/20 14:40:56.23 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/10/16 17:41:01.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 93 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : A6DB7981 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4 96 2 Temperature:Primary 'deg C (ITS90)' 7.5891 10.0672 3 Fluorescence:URU:Wetlabs mg/m^3 0.285 1.674 4 pH:SBE:Nominal n/a 8.789 8.972 5 Salinity:T0:C0 PSS-78 31.4737 33.4494 6 Oxygen:Dissolved:SBE mL/L 1.68 4.084 7 Oxygen:Dissolved:SBE umol/kg 73.09116 178.0154 8 Number_of_bin_records n/a 9 39 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-65\Pro $END *ADMINISTRATION MISSION : 2013-65 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Coast of Vancouver Island STATION : JF 03 EVENT NUMBER : 7 LATITUDE : 48 23.33000 N ! (deg min) LONGITUDE : 124 4.92000 W ! (deg min) WATER DEPTH : 108 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2038 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 4883 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/05/08 17:05:15 7268 7268 CLEAN 5.1 2014/05/08 17:08:13 7268 7268 SHIFTDAT 3.4 2014/05/09 14:40:02 7268 7268 SHIFTDAT 3.4 2014/05/09 15:24:37 7268 7268 SHIFTDAT 3.4 2014/05/09 15:26:49 7268 7268 DELETE 6.3 2014/05/09 15:32:29 7268 2478 CTDEDIT 5.0.4 2014/05/12 11:32:36 2478 2372 CALIB 11.8 2014/05/14 16:12:54 2372 2372 FILTERS 4.3 2014/05/14 16:17:33 2372 2372 BINAVE 4.1.1 2014/05/14 16:19:30 2372 93 REMOVECH 8.2 2014/05/14 17:15:40 93 93 CHGUNITS 3.1 2014/05/14 17:16:11 93 93 REORDER 1.3 2014/05/14 17:16:18 ? ? HDREDIT2 2.6 2014/05/20 14:40:56 ? ? $END $REMARKS -CLEAN functions: 2014/05/08 17:08:11 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.20 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 75.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 86.41 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/05/12 11:32:36 106 records were deleted in this editing session. 50 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/05/14 16:12:54 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/05/14 17:15:40 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperatur* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/05/20 14:40:56 Applied edit header: P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-65\2013-65-007.hex Software Version Seasave V 7.22.4 Temperature SN = 2038 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 16 2013 18:41:42 NMEA Latitude = 48 23.33 N NMEA Longitude = 124 04.92 W NMEA UTC (Time) = Oct 16 2013 17:41:01 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-65 Station: JF 03 Depth(m): 108 System UTC = Oct 16 2013 17:41:42 # nquan = 15 # nvalues = 7268 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 0.5 # name 13 = dz/dtM: Descent Rate [m/s], WS = 0.5 # name 14 = flag: flag # span 0 = 1, 7268 # span 1 = 2.124, 96.409 # span 2 = 7.5859, 10.1487 # span 3 = 7.5863, 10.1500 # span 4 = 3.444169, 3.471600 # span 5 = 3.444055, 3.480767 # span 6 = 0.1901, 8.7933 # span 7 = 1.0440, 1.9206 # span 8 = 8.777, 8.986 # span 9 = 0, 1 # span 10 = 31.4333, 33.4573 # span 11 = 31.4348, 33.4550 # span 12 = 1.64741, 4.24750 # span 13 = -1.509, 1.951 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 16 2013 17:41:01 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 31-Dec-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34114478e-003 # 6.27604357e-004 # 1.92175718e-005 # 1.36370000e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 01-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22314873e+000 # 5.07768024e-001 # -5.15940128e-004 # 5.09668877e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 30-Dec-13 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 01-Jan-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38017391e-003 # 6.40020208e-004 # 2.12586690e-005 # 1.76262755e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62060268e+000 # 1.47483016e+000 # -1.36190582e-003 # 1.93968125e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 03-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7181e-001 # -0.5187 # -2.2511e-003 # 1.3917e-004 # -2.6436e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = May 08 2014 16:34:41, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-65\RAW\CTD\2013-65-0007.hex P:\Crui se_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = May 08 2014 16:37:22, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-65\Processing\convert\2013-65-000 7.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 08 2014 16:38:36, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-65\Processing\wildedit\2013-65-00 07.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = May 08 2014 16:59:58, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-65\Processing\align\2013-65-0007.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 08 2014 17:03:08, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-65\Processing\celltm\2013-65-0007.c nv P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # derive_time_window_docdt = seconds: 0.5 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 0.5 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned lightly. Data Processing Notes: ---------------------- The Fluorescence:URU:Wetlabs data are nominal and unedited except that some records were removed in editing temperature and salinity. The only calibration sampling was from about 10m, so recalibration could not be based on that information. Since there were post-cruise calibrations available, those parameters were used in processing the pressure, temperature, conductivity and dissolved oxygen sensor data. The factory calibrations of the temperature and conductivity sensors in January 2014 imply that there was no significant drift in secondary salinity since the previous factory service. No recalibration was applied to the secondary salinity. For events #7 and 16 the primary salinity was used: that channel was recalibrated based on how it compared with the secondary salinity. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. The data are unedited except that some records were removed in editing temperature and salinity. For details on the processing see processing report: 2013-65-proc.doc. For this cast the primary temperature and salinity channels were used because the secondary channels were noisy with unstable sections near the surface. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 4.0 10.0672 1.434 8.972 31.4737 4.08 178.0 21 5.0 10.0467 1.496 8.972 31.4827 4.08 177.7 39 6.0 10.0469 1.520 8.971 31.4829 4.07 177.6 34 7.0 10.0440 1.503 8.971 31.4832 4.07 177.3 31 8.0 10.0394 1.450 8.970 31.4846 4.05 176.5 28 9.0 10.0356 1.447 8.969 31.4870 4.04 175.9 24 10.0 10.0212 1.515 8.968 31.4936 4.01 174.8 25 11.0 10.0123 1.513 8.966 31.4974 3.98 173.7 18 12.0 10.0029 1.493 8.964 31.5073 3.98 173.3 21 13.0 9.9901 1.653 8.964 31.5183 3.96 172.5 20 14.0 9.9776 1.559 8.962 31.5255 3.95 172.3 22 15.0 9.9736 1.491 8.960 31.5305 3.95 172.3 23 16.0 9.9638 1.547 8.960 31.5336 3.95 172.1 25 17.0 9.9638 1.649 8.960 31.5374 3.94 171.7 24 18.0 9.9652 1.638 8.959 31.5396 3.94 171.6 24 19.0 9.9593 1.674 8.959 31.5439 3.92 171.1 26 20.0 9.9531 1.433 8.958 31.5460 3.91 170.4 27 21.0 9.9479 1.417 8.957 31.5482 3.90 170.0 26 22.0 9.9339 1.320 8.954 31.5544 3.89 169.7 23 23.0 9.9247 1.224 8.954 31.5625 3.89 169.5 26 24.0 9.9219 1.333 8.954 31.5719 3.89 169.5 23 25.0 9.9224 1.201 8.954 31.5732 3.89 169.4 28 26.0 9.9236 1.233 8.954 31.5746 3.88 169.0 30 27.0 9.9228 1.127 8.953 31.5775 3.88 168.9 31 28.0 9.9204 1.154 8.951 31.5828 3.85 167.7 29 29.0 9.9166 1.207 8.950 31.5864 3.83 166.7 28 30.0 9.9060 1.108 8.949 31.5938 3.82 166.6 25 31.0 9.9056 1.119 8.949 31.6001 3.81 166.1 24 32.0 9.8984 1.087 8.948 31.6033 3.81 166.1 25 33.0 9.8946 1.016 8.947 31.6042 3.80 165.7 26 34.0 9.8944 1.062 8.947 31.6071 3.81 166.1 25 35.0 9.8887 1.061 8.945 31.6087 3.80 165.6 27 36.0 9.8863 1.075 8.946 31.6101 3.79 165.3 28 37.0 9.8871 0.948 8.945 31.6113 3.80 165.5 27 38.0 9.8866 0.988 8.945 31.6126 3.80 165.6 26 39.0 9.8771 1.093 8.945 31.6119 3.80 165.6 25 40.0 9.8671 0.907 8.945 31.6105 3.79 165.3 25 41.0 9.8657 0.965 8.945 31.6110 3.77 164.4 24 42.0 9.8568 0.952 8.942 31.6135 3.74 163.0 25 43.0 9.8430 0.953 8.942 31.6341 3.70 161.3 22 44.0 9.8278 1.003 8.940 31.6547 3.67 160.0 25 45.0 9.8096 0.951 8.936 31.6694 3.63 158.4 28 46.0 9.7714 0.920 8.934 31.6984 3.62 158.0 30 47.0 9.7324 0.914 8.933 31.7306 3.62 157.6 29 48.0 9.7248 0.771 8.932 31.7368 3.61 157.2 30 49.0 9.7203 0.897 8.931 31.7404 3.60 156.7 26 50.0 9.7155 0.904 8.931 31.7440 3.60 156.7 22 51.0 9.7108 0.787 8.930 31.7485 3.59 156.4 24 52.0 9.7070 0.744 8.927 31.7525 3.59 156.4 25 53.0 9.6981 0.793 8.929 31.7604 3.59 156.4 24 54.0 9.6926 0.782 8.927 31.7654 3.58 156.0 26 55.0 9.6835 0.789 8.928 31.7735 3.57 155.6 27 56.0 9.6680 0.812 8.927 31.7870 3.57 155.4 26 57.0 9.6529 0.896 8.925 31.8007 3.57 155.7 28 58.0 9.6474 0.790 8.926 31.8060 3.57 155.7 28 59.0 9.6469 0.823 8.926 31.8067 3.58 155.9 26 60.0 9.6462 0.778 8.925 31.8077 3.57 155.6 23 61.0 9.6422 0.793 8.925 31.8121 3.57 155.4 24 62.0 9.6410 0.780 8.925 31.8134 3.56 154.9 22 63.0 9.6389 0.915 8.923 31.8155 3.52 153.6 23 64.0 9.6258 0.779 8.923 31.8268 3.51 152.8 25 65.0 9.5953 0.828 8.922 31.8523 3.48 151.5 23 66.0 9.5693 0.838 8.920 31.8740 3.43 149.5 25 67.0 9.5568 0.797 8.918 31.8847 3.40 148.1 27 68.0 9.4970 0.794 8.914 31.9344 3.39 147.6 23 69.0 9.4549 0.860 8.913 31.9690 3.37 146.9 26 70.0 9.4355 0.756 8.912 31.9844 3.33 145.1 27 71.0 9.4255 0.751 8.910 31.9927 3.21 140.1 25 72.0 9.4074 0.811 8.902 32.0076 3.02 131.5 25 73.0 9.3487 0.754 8.890 32.0560 2.88 125.4 25 74.0 9.1051 0.746 8.883 32.2522 2.81 122.3 24 75.0 8.9137 0.645 8.876 32.4010 2.75 119.6 23 76.0 8.8364 0.593 8.871 32.4594 2.66 115.8 26 77.0 8.7679 0.611 8.863 32.5123 2.53 110.1 27 78.0 8.6691 0.558 8.856 32.5889 2.40 104.6 27 79.0 8.5114 0.493 8.849 32.7111 2.28 99.1 26 80.0 8.3946 0.448 8.840 32.7999 2.16 94.2 25 81.0 8.2409 0.410 8.834 32.9154 2.10 91.6 24 82.0 8.0845 0.359 8.828 33.0297 2.06 89.7 25 83.0 8.0001 0.364 8.825 33.0987 2.03 88.2 24 84.0 7.9764 0.376 8.819 33.1249 1.96 85.4 22 85.0 7.9662 0.328 8.814 33.1427 1.92 83.4 25 86.0 7.8801 0.349 8.811 33.2158 1.88 81.9 22 87.0 7.8252 0.355 8.808 33.2591 1.85 80.4 25 88.0 7.7969 0.389 8.804 33.2819 1.79 77.8 26 89.0 7.7535 0.340 8.801 33.3163 1.76 76.6 28 90.0 7.6891 0.328 8.797 33.3685 1.73 75.1 28 91.0 7.6629 0.313 8.795 33.3904 1.72 74.6 25 92.0 7.6216 0.345 8.793 33.4229 1.70 74.1 26 93.0 7.6186 0.321 8.791 33.4250 1.69 73.7 21 94.0 7.6105 0.285 8.791 33.4320 1.68 73.3 22 95.0 7.5967 0.320 8.792 33.4431 1.68 73.2 22 96.0 7.5891 0.304 8.789 33.4494 1.68 73.1 9