*2014/05/20 14:40:56.17 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/10/16 15:46:49.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 48 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 211E2D99 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 0 47 2 Temperature:Secondary 'deg C (ITS90)' 9.2769 10.201 3 Fluorescence:URU:Wetlabs mg/m^3 0.506 1.133 4 pH:SBE:Nominal n/a 8.853 8.932 5 Salinity:T1:C1 PSS-78 31.1362 31.9707 6 Oxygen:Dissolved:SBE mL/L 3.07 5.183 7 Oxygen:Dissolved:SBE umol/kg 133.7494 225.9821 8 Number_of_bin_records n/a 5 43 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-65\Pro $END *ADMINISTRATION MISSION : 2013-65 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Coast of Vancouver Island STATION : JF 02 EVENT NUMBER : 4 LATITUDE : 48 20.43000 N ! (deg min) LONGITUDE : 123 50.97000 W ! (deg min) WATER DEPTH : 129 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2038 Conductivity ' ' 1763 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 4883 Conductivity:2 ' ' 3394 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.4.1 2014/05/08 17:05:13 7029 7029 CLEAN 5.1 2014/05/08 17:08:11 7029 7029 SHIFTDAT 3.4 2014/05/09 14:40:00 7029 7029 SHIFTDAT 3.4 2014/05/09 15:24:36 7029 7029 SHIFTDAT 3.4 2014/05/09 15:26:48 7029 7029 REVERSE 2.0 2014/05/09 15:31:01 7029 7029 DELETE 6.3 2014/05/09 15:33:33 7029 3058 CTDEDIT 5.0.4 2014/05/12 11:20:43 3058 1104 CALIB 11.8 2014/05/14 16:12:54 1104 1104 FILTERS 4.3 2014/05/14 16:17:32 1104 1104 BINAVE 4.1.1 2014/05/14 16:19:29 1104 48 REMOVECH 8.2 2014/05/14 17:15:59 48 48 CHGUNITS 3.1 2014/05/14 17:16:11 48 48 REORDER 1.3 2014/05/14 17:16:18 ? ? HDREDIT2 2.6 2014/05/20 14:40:56 ? ? $END $REMARKS -CLEAN functions: 2014/05/08 17:08:11 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.20 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 75.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 111.93 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/05/12 11:20:43 1954 records were deleted in this editing session. 8 changes in channel Salinity:T1:C1 -CALIB parameters: 2014/05/14 16:12:54 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Salinity:T0:C0 PSS-78 10 -0.2000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/05/14 17:15:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperatur* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/05/20 14:40:56 Applied edit header: P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-65\2013-65-002.hex Software Version Seasave V 7.22.4 Temperature SN = 2038 Conductivity SN = 1763 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 16 2013 16:47:14 NMEA Latitude = 48 20.43 N NMEA Longitude = 123 50.97 W NMEA UTC (Time) = Oct 16 2013 15:46:49 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-65 Station: JF 02 Depth(m): 129 System UTC = Oct 16 2013 15:47:14 # nquan = 15 # nvalues = 7029 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 0.5 # name 13 = dz/dtM: Descent Rate [m/s], WS = 0.5 # name 14 = flag: flag # span 0 = 1, 7029 # span 1 = -0.683, 121.931 # span 2 = 7.1593, 10.5384 # span 3 = 7.1598, 10.2020 # span 4 = 0.163999, 3.455581 # span 5 = 0.102422, 3.455319 # span 6 = -0.2067, 64.7933 # span 7 = 0.9096, 2.3455 # span 8 = 8.736, 8.938 # span 9 = 0, 1 # span 10 = 1.1713, 33.8024 # span 11 = 0.7234, 33.7953 # span 12 = 1.22180, 6.66338 # span 13 = -2.639, 3.204 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 16 2013 15:46:49 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 31-Dec-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34114478e-003 # 6.27604357e-004 # 1.92175718e-005 # 1.36370000e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 01-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22314873e+000 # 5.07768024e-001 # -5.15940128e-004 # 5.09668877e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 30-Dec-13 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 01-Jan-14 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38017391e-003 # 6.40020208e-004 # 2.12586690e-005 # 1.76262755e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 03-Jan-14 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62060268e+000 # 1.47483016e+000 # -1.36190582e-003 # 1.93968125e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 03-Jan-14 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7181e-001 # -0.5187 # -2.2511e-003 # 1.3917e-004 # -2.6436e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.4300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = May 08 2014 16:34:40, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-65\RAW\CTD\2013-65-0002.hex P:\Crui se_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = May 08 2014 16:37:21, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-65\Processing\convert\2013-65-000 2.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 08 2014 16:38:35, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-65\Processing\wildedit\2013-65-00 02.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = May 08 2014 16:59:58, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-65\Processing\align\2013-65-0002.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 08 2014 17:03:07, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-65\Processing\celltm\2013-65-0002.c nv P:\Cruise_Data_Processing\2013-65\Processing\doc\2013-65-ctd.xmlcon # derive_time_window_docdt = seconds: 0.5 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 0.5 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove records corrupted by shed wakes. All records below 47db were removed because the pumps were off. Data Processing Notes: ---------------------- The Fluorescence:URU:Wetlabs data are nominal and unedited except that some records were removed in editing temperature and salinity. The only calibration sampling was from about 10m, so recalibration could not be based on that information. Since there were post-cruise calibrations available, those parameters were used in processing the pressure, temperature, conductivity and dissolved oxygen sensor data. The factory calibrations of the temperature and conductivity sensors in January 2014 imply that there was no significant drift in secondary salinity since the previous factory service. No recalibration was applied to the secondary salinity. For events #7 and 16 the primary salinity was used: that channel was recalibrated based on how it compared with the secondary salinity. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. The data are unedited except that some records were removed in editing temperature and salinity. For details on the processing see processing report: 2013-65-proc.doc. WARNING: The pumps were off for most of this cast. The data in this file come from the upcast portion of the file after the pumps were turned on. The quality of the data are considered lower than downcast data. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (-0.2E-02 1) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 0.0 10.2010 1.133 8.928 31.1362 5.18 226.0 15 1.0 10.1994 1.109 8.932 31.1395 4.52 196.9 43 2.0 10.1687 1.130 8.930 31.1685 3.95 172.2 27 3.0 10.1162 1.072 8.926 31.2246 4.04 176.1 28 4.0 10.0284 0.940 8.921 31.2830 4.00 174.3 30 5.0 9.9588 0.890 8.916 31.3161 3.90 169.9 16 6.0 9.9501 0.780 8.914 31.3180 3.85 168.1 10 7.0 9.9383 0.950 8.910 31.3213 3.73 162.5 20 8.0 9.9357 0.950 8.910 31.3217 3.72 162.1 28 9.0 9.9260 0.841 8.908 31.3244 3.71 161.6 23 10.0 9.9223 0.780 8.907 31.3258 3.70 161.4 25 11.0 9.9200 0.785 8.907 31.3262 3.70 161.2 24 12.0 9.9089 0.815 8.906 31.3301 3.69 160.8 21 13.0 9.8976 0.815 8.906 31.3358 3.68 160.4 23 14.0 9.8660 0.812 8.904 31.3589 3.69 160.8 22 15.0 9.8318 0.758 8.903 31.3878 3.68 160.4 23 16.0 9.7779 0.799 8.902 31.4410 3.67 160.2 22 17.0 9.7480 0.734 8.901 31.4787 3.66 159.4 23 18.0 9.7222 0.782 8.896 31.5053 3.62 157.6 25 19.0 9.7035 0.663 8.895 31.5241 3.58 155.9 25 20.0 9.6655 0.702 8.894 31.5570 3.54 154.5 25 21.0 9.6527 0.712 8.893 31.5675 3.52 153.6 23 22.0 9.6413 0.725 8.891 31.5769 3.51 152.9 25 23.0 9.6352 0.719 8.890 31.5817 3.50 152.5 22 24.0 9.6236 0.743 8.890 31.5903 3.49 151.9 21 25.0 9.6051 0.685 8.889 31.6065 3.49 152.1 20 26.0 9.5624 0.701 8.888 31.6530 3.48 151.7 21 27.0 9.5202 0.658 8.887 31.7036 3.48 151.6 23 28.0 9.4883 0.709 8.884 31.7389 3.45 150.4 24 29.0 9.4512 0.610 8.880 31.7763 3.41 148.6 25 30.0 9.4120 0.569 8.879 31.8163 3.36 146.3 26 31.0 9.3676 0.598 8.876 31.8632 3.33 144.9 25 32.0 9.3471 0.588 8.874 31.8862 3.29 143.2 23 33.0 9.3329 0.601 8.871 31.9135 3.24 141.2 23 34.0 9.3340 0.570 8.872 31.9239 3.21 139.9 22 35.0 9.3345 0.557 8.868 31.9276 3.19 139.0 21 36.0 9.3357 0.531 8.868 31.9316 3.18 138.5 20 37.0 9.3330 0.526 8.866 31.9373 3.16 137.8 20 38.0 9.3301 0.518 8.864 31.9414 3.15 137.5 23 39.0 9.3262 0.524 8.862 31.9437 3.14 136.8 24 40.0 9.3263 0.565 8.862 31.9446 3.13 136.3 22 41.0 9.3248 0.526 8.860 31.9460 3.12 135.8 26 42.0 9.3238 0.602 8.859 31.9473 3.10 135.0 25 43.0 9.3219 0.512 8.857 31.9499 3.10 134.9 22 44.0 9.3129 0.510 8.857 31.9561 3.09 134.6 23 45.0 9.2986 0.529 8.857 31.9614 3.08 134.4 23 46.0 9.2891 0.506 8.854 31.9660 3.07 133.8 22 47.0 9.2769 0.567 8.853 31.9707 3.07 133.7 5