*2016/07/14 15:17:30.29 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/07/06 16:38:30.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 57 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : B6D4BD8F NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 2 58 2 Temperature:Primary 'deg C (ITS90)' 8.1385 19.2486 3 Transmissivity %/metre 35.9 59 4 Fluorescence:URU:Seapoint mg/m^3 2.567 2.874 5 PAR uE/m^2/sec 0.8E-01 117.019 6 Salinity:T0:C0 PSS-78 22.5002 32.4637 7 Oxygen:Dissolved:SBE mL/L 1.8 7.214 8 Oxygen:Dissolved:SBE umol/kg 78.37977 314.7002 9 Number_of_bin_records n/a 14 47 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 6 F ' ' 1 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-50\pro $END *ADMINISTRATION MISSION : 2013-50 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : WCVI and Northern Inlet Moorings SCIENTIST : Juhasz T. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI and Northern Inlets STATION : EF04 EVENT NUMBER : 33 LATITUDE : 49 3.12000 N ! (deg min) LONGITUDE : 125 8.57000 W ! (deg min) WATER DEPTH : 61 ALTIMETER (M) : 3.22 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2668 Conductivity:2 ' ' 2754 Fluorometer:Seapoint ' ' 2228 'Oxygen:SBE 43' ' ' 0997 'Transmissometer:WET Labs C-Star' ' ' 1396 Altimeter ' ' 1204 PAR/Irradiance:Biospherical/Licor ' ' 4615 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.3 2014/01/10 11:10:19 24717 24717 CLEAN 5.1 2014/01/10 11:10:41 24717 24717 SHIFTDAT 3.4 2014/01/14 16:05:49 24717 24717 SHIFTDAT 3.4 2014/01/14 17:38:07 24717 24717 SHIFTDAT 3.4 2014/01/14 17:41:51 24717 24717 DELETE 6.3 2014/01/14 17:44:43 24717 1943 CTDEDIT 5.0.4 2014/01/15 16:28:51 1943 1837 CALIB 11.8 2014/01/16 09:20:29 1837 1837 FILTERS 4.3 2014/01/16 10:01:00 1837 1837 BINAVE 4.1.1 2014/01/16 10:01:20 1837 57 REMOVECH 8.2 2014/01/16 10:59:45 57 57 CHGUNITS 3.1 2014/01/16 11:02:04 57 57 REORDER 1.3 2014/01/16 11:02:58 ? ? HDREDIT2 2.6 2014/01/16 11:11:08 ? ? HDREDIT2 3.0.2 2016/07/14 15:17:30 ? ? $END $REMARKS -CLEAN functions: 2014/01/10 11:10:41 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= 1.40 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 47.92 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/01/15 16:28:51 106 records were deleted in this editing session. 50 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/01/16 09:20:29 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-50\Processing\doc\2013-50-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1054500E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/01/16 10:59:45 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/01/16 11:11:08 Applied edit header: P:\Cruise_Data_Processing\2013-50\Processing\doc\2013-50-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 5: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 -HEADER EDITS: 2016/07/14 15:17:30 Applied edit header: P:\Cruise_Data_Processing\2013-FL\2013-HDR-FL.TXT $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = E:\Data\2013-50\2013-50-0033.hex Software Version Seasave V 7.22.4 Temperature SN = 2023 Conductivity SN = 2280 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 06 2013 09:38:27 NMEA Latitude = 49 03.12 N NMEA Longitude = 125 08.57 W NMEA UTC (Time) = Jul 06 2013 16:38:30 Store Lat/Lon Data = Append to Every Scan Ship: J P Tully Cruise: 2013-50 Depth: 60 , Station: EF04 microcat test bot-5, 20 and surface , hold for 2 mins. System UTC = Jul 06 2013 16:38:27 # nquan = 17 # nvalues = 24717 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = sbeox0V: Oxygen raw, SBE 43 [V] # name 9 = par: PAR/Irradiance, Biospherical/Licor # name 10 = altM: Altimeter [m] # name 11 = dz/dtM: Descent Rate [m/s] # name 12 = pumps: Pump Status # name 13 = sal00: Salinity, Practical [PSU] # name 14 = sal11: Salinity, Practical, 2 [PSU] # name 15 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 1 # name 16 = flag: flag # span 0 = 1, 24717 # span 1 = -0.110, 57.923 # span 2 = 7.2575, -99.0000 # span 3 = 8.1063, 27.3888 # span 4 = 0.344117, 3.580985 # span 5 = 0.289295, 3.565727 # span 6 = 0.0000, 94.2315 # span 7 = 0.0000e+00, 3.5055e+00 # span 8 = 1.0012, 3.6459 # span 9 = 7.2886e-02, 3.3607e+03 # span 10 = 0.00, 100.00 # span 11 = -1.030, 0.865 # span 12 = 0, 1 # span 13 = 2.0557, 32.4804 # span 14 = 1.7099, 32.4806 # span 15 = 1.50518, 42.37382 # span 16 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 06 2013 16:38:30 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2023 # 31-Jan-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.11056177e-003 # 6.24714349e-004 # 1.97891287e-005 # 1.88702998e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2280 # 29-Jan-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00955037e+001 # 1.35324049e+000 # -2.33974617e-003 # 2.26260145e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0443 # 23-Mar-13 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99985327 # 3.73990 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2668 # 01-Feb-13 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.35639086e-003 # 6.48643105e-004 # 2.44567925e-005 # 2.40597452e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2754 # 30-Jan-13 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.05984808e+001 # 1.61542018e+000 # -2.38112540e-003 # 2.73092331e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 2228 # # # 1 # 0.000 # # # # # # # # # 0997 # 16-Feb-13 # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.4081e-001 # -0.4850 # -2.4308e-003 # 1.3327e-004 # -2.5567e-006 # 2.5826e+000 # 1.92634e-004 # -4.64803e-002 # 3.6000e-002 # 1.5900 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 1396 # Jan 31st 2013 # 18.8463 # 0.0000 # 0.250 # # # # # # 1204 # # 15.000 # 0.000 # # # # # # # # # # # # 4615 # 16th of March 2011 # 1.00000000 # 0.00000000 # 3367003367.00000000 # 1.00000000 # -0.40341896 # # # # datcnv_date = Jan 10 2014 11:08:08, 7.22.5 [datcnv_vars = 13] # datcnv_in = P:\Cruise_Data_Processing\2013-50\RAW\CTD\2013-50-0033.hex P:\Crui se_Data_Processing\2013-50\Processing\doc\2013-50-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Jan 10 2014 11:08:37, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-50\Processing\convert\2013-50-003 3.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Jan 10 2014 11:08:58, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-50\Processing\wildedit\2013-50-00 33.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = Jan 10 2014 11:09:13, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-50\Processing\align\2013-50-0033.cn v # celltm_alpha = 0.0245, 0.0245 # celltm_tau = 9.5000, 9.5000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Jan 10 2014 11:09:41, 7.22.5 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2013-50\Processing\celltm\2013-50-0033.c nv P:\Cruise_Data_Processing\2013-50\Processing\doc\2013-50-ctd.XMLCON # derive_time_window_docdt = seconds: 1 # derive_ox_tau_correction = yes # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned lightly. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application Note #64-2, June 2012 revision. The Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±0.25 mL/L from 0 to 100db ±0.10 mL/L from 100 to 400db ±0.05 mL/L below 400db The two CTD salinity channels were generally within 0.001 of each other. The comparison with bottles had a lot of scatter, but the average differences showed that both CTD salinity channels were well within 0.001 of bottle values. During a May 2013 cruise with more deep sampling, both salinity channels were found to be within 0.001 of bottle samples. SBE Fluorescence data from this sensor are considered unreliable. Dark values are much higher than expected from this cruise and other cruises in May and June 2013 and appear to be increasing with time. Fluorescence values have also been lower than usual relative to bottles, particularly at higher chlorophyll values. The data are provided since the shape may be useful. For details on the processing see the report: 2013-50-proc.doc. --------------------------------------------------------------------------------- WARNING: SeaPoint Fluorometer #2228 malfunctioned during the latter half of 2013. There were large values at great depth that got steadily higher through the year until it was removed from service. The data have been left in the file so researchers can see the shape of the profile. Comparison with extracted chlorophyll is recommended. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0545) $END !--1--- ---2---- --3-- ---4--- --5--- ---6---- --7--- --8-- -9-- !Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb !re ure: missi cence: :T0:C0 : n: er_o ! Primary vity URU: Dissol Disso ~bin ! Seapoin ved: lved: _rec ! t SBE SBE ords !------ -------- ----- ------- ------ -------- ------ ----- ---- *END OF HEADER 2.0 19.2486 35.9 2.744 117.0 22.5002 5.39 237.1 27 3.0 18.4248 38.1 2.874 50.9 24.7606 6.31 276.9 32 4.0 16.8292 41.4 2.858 43.6 26.8395 7.09 310.6 41 5.0 15.7514 43.6 2.853 31.0 27.7792 6.97 304.9 40 6.0 11.8655 50.2 2.811 23.0 30.8157 7.21 314.7 39 7.0 11.0037 53.9 2.808 17.7 31.3907 7.14 311.3 36 8.0 10.6144 55.2 2.762 14.3 31.5049 7.08 308.7 36 9.0 10.5258 56.6 2.716 12.0 31.4554 6.73 293.3 35 10.0 10.4314 57.0 2.732 10.3 31.4989 6.36 277.0 36 11.0 10.1825 57.9 2.648 8.9 31.5159 5.81 253.2 35 12.0 10.0235 58.8 2.598 7.7 31.5480 5.42 236.1 35 13.0 9.7766 59.0 2.573 6.8 31.6210 5.23 228.1 36 14.0 9.6363 59.0 2.594 6.1 31.6703 4.91 214.0 35 15.0 9.6061 58.6 2.597 5.5 31.6776 4.59 199.9 34 16.0 9.4874 57.9 2.593 5.0 31.7249 4.37 190.4 34 17.0 9.3891 57.6 2.612 4.6 31.7669 4.28 186.3 33 18.0 9.3135 57.5 2.618 4.3 31.8071 4.22 183.7 34 19.0 9.2887 57.2 2.637 4.0 31.8201 4.04 176.2 32 20.0 9.2655 57.5 2.628 3.7 31.8328 3.96 172.8 31 21.0 9.2018 57.6 2.637 3.5 31.8675 3.89 169.6 31 22.0 9.1929 57.3 2.644 3.3 31.8737 3.79 164.9 30 23.0 9.1680 57.0 2.646 3.1 31.8870 3.64 158.5 29 24.0 9.1301 56.9 2.647 3.0 31.9065 3.49 152.2 29 25.0 9.0827 56.8 2.654 2.8 31.9319 3.41 148.6 29 26.0 9.0194 56.5 2.654 2.7 31.9647 3.33 145.0 29 27.0 8.9741 56.4 2.657 2.5 31.9877 3.22 140.4 28 28.0 8.9498 56.1 2.659 2.4 32.0015 3.12 136.0 29 29.0 8.8950 55.7 2.663 2.3 32.0344 3.06 133.2 28 30.0 8.8376 55.3 2.665 2.1 32.0649 3.01 130.9 29 31.0 8.7971 54.9 2.666 2.0 32.0879 2.93 127.8 28 32.0 8.7599 54.6 2.667 1.9 32.1072 2.87 124.9 28 33.0 8.7278 54.5 2.664 1.8 32.1238 2.78 121.1 29 34.0 8.7062 54.2 2.664 1.6 32.1337 2.71 117.8 28 35.0 8.6699 54.1 2.664 1.5 32.1522 2.66 115.9 29 36.0 8.6270 54.0 2.664 1.3 32.1777 2.66 116.0 28 37.0 8.5891 53.5 2.661 1.2 32.2001 2.65 115.4 29 38.0 8.5838 53.5 2.657 1.1 32.2041 2.61 113.5 28 39.0 8.5639 53.4 2.658 1.0 32.2194 2.61 113.7 29 40.0 8.5355 53.1 2.656 0.9 32.2352 2.59 112.7 28 41.0 8.5273 53.0 2.652 0.8 32.2420 2.54 110.6 29 42.0 8.5076 52.9 2.654 0.7 32.2555 2.47 107.5 29 43.0 8.4979 52.5 2.655 0.6 32.2602 2.41 104.8 28 44.0 8.4784 52.3 2.652 0.5 32.2683 2.35 102.2 28 45.0 8.4489 52.5 2.647 0.5 32.2866 2.32 101.0 27 46.0 8.4148 52.3 2.645 0.4 32.3061 2.29 99.7 29 47.0 8.3741 51.9 2.644 0.4 32.3362 2.18 94.8 29 48.0 8.3578 51.4 2.646 0.3 32.3456 2.06 89.8 29 49.0 8.3398 51.2 2.642 0.3 32.3503 2.00 87.2 30 50.0 8.2854 51.5 2.642 0.2 32.3770 1.98 86.0 35 51.0 8.2700 51.9 2.643 0.2 32.3848 1.93 84.0 41 52.0 8.2516 51.6 2.640 0.2 32.3988 1.90 82.8 40 53.0 8.2332 51.4 2.634 0.2 32.4083 1.88 81.9 33 54.0 8.2145 51.4 2.634 0.1 32.4200 1.84 80.1 44 55.0 8.1961 51.6 2.631 0.1 32.4303 1.80 78.4 47 56.0 8.1781 51.9 2.625 0.1 32.4403 1.81 78.9 39 57.0 8.1639 52.1 2.618 0.1 32.4483 2.06 89.6 43 58.0 8.1385 52.2 2.567 0.1 32.4637 1.90 82.9 14