*2016/07/14 15:11:16.10 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/07/01 02:18:23.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 13 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 8847BC2A NUMBER OF CHANNELS : 24 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 13 2 Bottle_Number n/a 1 13 3 Pressure decibar 1.792 359.876 4 Temperature:Primary 'deg C (ITS90)' 6.7763 12.4571 5 Transmissivity %/metre 6.8 60.2 6 Fluorescence:URU:Seapoint mg/m^3 1.887 8.879 7 PAR uE/m^2/sec 0 124.181 8 Salinity:T0:C0 PSS-78 24.0291 33.1414 9 Oxygen:Dissolved:SBE mL/L 3.289 10.202 10 Oxygen:Dissolved:SBE umol/kg 143.1 447.4 11 Number_of_bin_records n/a 101 121 12 Sample_Number n/a 12 24 13 Temperature:Draw 'deg C (ITS90)' 7 11 14 Salinity:Bottle PSS-78 26.9605 33.1202 15 Flag:Salinity:Bottle n/a 16 Oxygen:Dissolved mL/L 3.313 8.015 17 Oxygen:Dissolved umol/kg 144.1698 351.3997 18 Flag:Oxygen:Dissolved n/a 19 Nitrate_plus_Nitrite umol/L 0.4 28.1 20 Flag:Nitrate_plus_Nitrite n/a 21 Silicate umol/L 3.2 47.7 22 Flag:Silicate n/a 23 Phosphate umol/L 0.24 2.15 24 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 5 I I 0 13 -99 ' ' 6 F R4 1 14 -99 ' ' 9 F R4 4 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 8 F R4 2 17 -99 ' ' 6 F ' ' 0 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 6 F R4 1 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 6 F R4 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2013-50 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : WCVI & Northern Inlet Moorings SCIENTIST : Juhasz T. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI & Northern Inlets STATION : SC01 EVENT NUMBER : 6 LATITUDE : 53 0.62000 N ! (deg min) LONGITUDE : 129 16.08000 W ! (deg min) WATER DEPTH : 373 ALTIMETER (M) : 4.88 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2668 Conductivity:2 ' ' 2754 Fluorometer:Seapoint ' ' 2228 'Oxygen:SBE 43' ' ' 0997 'Transmissometer:WET Labs C-Star' ' ' 1396 Altimeter ' ' 1204 PAR/Irradiance:Biospherical/Licor ' ' 4615 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.3 2014/01/06 17:17:42 1553 1553 CLEAN 5.1 2014/01/06 17:18:44 1553 1553 ADDSAMP 3.6 2014/01/07 12:17:30 1553 1553 BINAVE 4.1.1 2014/01/07 12:17:59 1553 13 MERGE 3.5 2014/01/10 09:31:51 13 13 CLEAN 5.1 2014/01/10 09:31:53 13 13 CALIB 11.8 2014/01/16 09:04:52 13 13 SORT 3.6 2014/01/16 13:02:09 13 13 REMOVECH 8.2 2014/01/16 13:03:23 13 13 CHGUNITS 3.1 2014/01/16 13:05:31 13 13 CHGUNITS 3.1 2014/01/16 13:05:50 13 13 REORDER 1.3 2014/01/16 13:08:48 ? ? HDREDIT2 2.6 2014/01/17 14:32:29 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:58:37 13 13 HDREDIT2 3.0.2 2016/07/14 15:11:16 ? ? $END $REMARKS -CLEAN functions: 2014/01/06 17:18:43 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2013-50\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2014/01/10 09:31:51 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2013-50\Processing\hydro\2013-50-0006.samavg Secondary file: P:\Cruise_Data_Processing\2013-50\Processing\hydro\2013-50-0006.mrgcln1s -SORT parameters: 2014/01/08 17:21:24 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2014/01/10 09:31:53 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2014/01/16 09:04:52 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-50\Processing\doc\2013-50-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1054500E+01 -SORT parameters: 2014/01/16 13:02:09 Sorted in ascending order of channel Pressure -REMOVECH 2014/01/16 13:03:23 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Sal* 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2014/01/17 14:32:29 Applied edit header: P:\Cruise_Data_Processing\2013-50\Processing\doc\HYDRO\2013-50-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 13: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F6.1 Channel 14: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 15: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 16: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: F8.3 ==> F8.2 Channel 17: Oxygen:Dissolved [umol/kg] Format: F6.1 ==> F6.0 Channel 18: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 19: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 20: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 21: Silicate [umol/L] Units: ==> umol/L Channel 22: Flag:Silicate [n/a] Units: ==> n/a Channel 23: Phosphate [umol/L] Units: ==> umol/L Channel 24: Flag:Phosphate [n/a] Units: ==> n/a -HEADER EDITS: 2016/07/14 15:11:16 Applied edit header: P:\Cruise_Data_Processing\2013-FL\2013-HDR-FL.TXT $END *COMMENTS Sample_Number 24: SAL: Sample number was missing on the label but showed that the sample was to be collected from Niskin 13. Sample_Number 14: OXY: Niskin top seal suspect. Spigot leaking. Sample_Number 18: OXY: Possible misfire. Value is out of line in the profile. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in room 1409 with the OSD Water Properties fluoroemter. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2013-50CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2013-50OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 13 to 26 days after collection. For details including a duplicate analysis see file QF2013-50SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples is collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) is collected and stored at 4C in the dark. All samples are returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For raw data, precision and duplicate details see spreadsheet QF2013-50nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. SBE Fluorescence data from this sensor are considered unreliable. Dark values are much higher than expected from this cruise and other cruises in May and June 2013 and appear to be increasing with time. Fluorescence values have also been lower than usual relative to bottles, particularly at higher chlorophyll values. The data are provided since the shape may be useful. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application Note #64-2, June 2012 revision. The dissolved oxygen analyst reported that the precision was relatively low (0.012mL/L) even after removal of known bad values and outliers selected by the Chauvenet criterion. Based on the analyst's recommendation, the data are reported with only 2 decimal places in mL/L and no decimal places in umol/kg. For details on the processing see the report: 2013-50-proc.doc. --------------------------------------------------------------------------------- WARNING: SeaPoint Fluorometer #2228 malfunctioned during the latter half of 2013. There were large values at great depth that got steadily higher through the year until it was removed from service. The data have been left in the file so researchers can see the shape of the profile. Comparison with extracted chlorophyll is recommended. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0545) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- ---8---- --9--- --10- -11- -12- --13- ---14--- 15 ---16-- --17- 18 --19- 20 --21- 22 --23-- 24 !Bo Bo Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb Samp Tempe Salinity Fl Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ ratur :Bottle ag Dissolv n: ag te_ ag ate ag ate ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb e: ~o ed Disso ~o plus_ ~t ~i ~p !en mb Seapoin ved: lved: _rec er Draw tt lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed te te te te !-- -- ------ -------- ----- ------- ------ -------- ------ ----- ---- ---- ----- -------- -- ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 12 12 1.8 12.4571 7.9 8.879 124.2 24.0291 10.13 444.5 101 23 11.0 -99.0000 0 8.02 351. 0 -99.0 0 -99.0 0 -99.00 0 13 13 1.8 12.4210 6.8 8.875 122.2 24.0993 10.20 447.4 121 24 -99.0 26.9605 2 -99.00 -99. 0 0.4 0 3.2 0 0.24 0 11 11 10.4 9.2969 50.9 2.471 2.3 30.4898 5.50 239.9 121 22 9.4 -99.0000 0 5.38 235. 0 13.6 0 24.2 0 1.37 0 10 10 20.3 8.9307 56.5 2.229 0.5 31.1869 5.21 227.0 121 21 9.1 -99.0000 0 5.14 224. 0 15.3 0 27.1 0 1.49 0 9 9 31.0 8.6001 57.0 2.225 0.1 31.5592 4.79 208.9 121 20 8.8 -99.0000 0 4.76 207. 0 17.8 0 30.5 0 1.62 0 8 8 50.8 8.0929 58.2 2.157 0.0 31.8536 4.43 192.9 121 19 8.7 -99.0000 0 4.55 198. 0 19.2 0 32.6 0 1.68 0 7 7 75.9 8.1651 59.0 2.146 0.0 32.4474 4.26 185.5 121 18 7.0 -99.0000 0 5.13 223. 3 15.3 0 27.0 0 1.49 0 6 6 100.7 7.7151 59.1 2.131 0.0 32.7299 3.88 168.9 121 17 8.1 -99.0000 0 3.86 168. 0 23.9 0 40.0 0 1.92 0 5 5 152.6 7.1451 59.7 2.118 0.0 32.8694 3.57 155.5 121 16 7.6 -99.0000 0 3.58 156. 0 26.3 6 43.6 6 2.06 6 4 4 202.6 6.9872 60.2 2.080 0.0 32.9969 3.47 151.0 121 15 7.5 -99.0000 0 3.48 151. 6 27.1 0 45.3 0 2.09 0 3 3 251.9 6.8670 59.8 1.975 0.0 33.0644 3.40 148.0 121 14 7.4 -99.0000 0 3.41 149. 3 27.6 0 46.6 0 2.13 0 2 2 303.1 6.8029 59.8 1.927 0.0 33.1204 3.33 144.9 121 13 7.3 33.1202 0 3.34 146. 0 28.1 0 47.7 0 2.15 0 1 1 359.9 6.7763 59.7 1.887 0.0 33.1414 3.29 143.1 121 12 7.5 -99.0000 0 3.31 144. 0 -99.0 0 -99.0 0 -99.00 0