*2014/04/24 14:15:46.03 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/07/12 21:10:47.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 88 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 6E0255DB NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4 91 2 Temperature:Primary 'deg C (ITS90)' 7.6185 11.0886 3 Fluorescence:URU:Wetlabs mg/m^3 0.589 3.826 4 pH:SBE:Nominal n/a 8.647 8.911 5 Salinity:T0:C0 PSS-78 31.0006 33.0385 6 Oxygen:Dissolved:SBE mL/L 2.5 5.434 7 Oxygen:Dissolved:SBE umol/kg 108.8013 236.9851 8 Number_of_bin_records n/a 12 37 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-43\Pro $END *ADMINISTRATION MISSION : 2013-43 AGENCY : 'PBS, Marine Ecosystems and Aquaculture Division,' CONTINUED : ' Nanaimo, B.C.' COUNTRY : Canada PROJECT : Salmon Marine Interactions SCIENTIST : Neville C. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : JF05 EVENT NUMBER : 178 LATITUDE : 48 28.21000 N ! (deg min) LONGITUDE : 124 20.85000 W ! (deg min) WATER DEPTH : 98 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 2663 Conductivity:2 ' ' 2424 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.3 2014/04/16 10:49:15 5821 5821 CLEAN 5.1 2014/04/16 10:54:34 5821 5821 MERGEHDR 1.2 2014/04/16 14:30:41 5821 5821 SHIFTDAT 3.4 2014/04/16 16:43:54 5821 5821 SHIFTDAT 3.4 2014/04/16 17:27:57 5821 5821 SHIFTDAT 3.4 2014/04/17 09:41:34 5821 5821 DELETE 6.3 2014/04/17 10:07:01 5821 2288 CTDEDIT 5.0.4 2014/04/21 15:46:38 2288 2239 CALIB 11.8 2014/04/23 16:40:44 2239 2239 FILTERS 4.3 2014/04/23 17:27:46 2239 2239 BINAVE 4.1.1 2014/04/23 17:28:54 2239 88 REMOVECH 8.2 2014/04/23 17:30:24 88 88 CHGUNITS 3.1 2014/04/23 17:44:48 88 88 REORDER 1.3 2014/04/23 17:45:02 ? ? HDREDIT2 2.6 2014/04/24 14:15:46 ? ? $END $REMARKS -CLEAN functions: 2014/04/16 10:52:53 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.30 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 81.40 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/04/21 15:46:38 49 records were deleted in this editing session. 28 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/04/23 16:40:44 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Oxygen:Dissolved:SBE mL/L 10 0.4180000E-01 0.1070600E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/04/23 17:30:24 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/04/24 14:15:46 Applied edit header: P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-43\2013-43-0178.hex Software Version Seasave V 7.22.4 Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 30 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 12 2013 14:10:47 SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-43 Station: JF05 Depth(m): 97m System UTC = Jul 12 2013 21:10:47 # nquan = 15 # nvalues = 5821 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 1 # name 13 = dz/dtM: Descent Rate [m/s], WS = 1 # name 14 = flag: flag # span 0 = 1, 5821 # span 1 = 2.205, 91.399 # span 2 = 7.5991, 11.1326 # span 3 = 7.5260, 11.0435 # span 4 = 3.407897, 3.511509 # span 5 = 3.408414, 3.511837 # span 6 = 0.4758, 4.3012 # span 7 = 1.2623, 2.3199 # span 8 = 8.632, 8.918 # span 9 = 0, 1 # span 10 = 30.9770, 33.0538 # span 11 = 31.0594, 33.1284 # span 12 = 2.28591, 5.12455 # span 13 = -1.287, 1.353 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 12 2013 21:10:47 [System UTC, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 2663 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.37922733e-003 # 6.52156445e-004 # 2.50583016e-005 # 2.45150025e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2424 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00422903e+001 # 1.46672240e+000 # 9.13089396e-004 # 5.03120339e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 02-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.5380e-001 # -0.5130 # -1.7303e-003 # 7.3264e-005 # -1.4010e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.3800 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = Apr 16 2014 09:07:42, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-43\RAW\CTD\2013-43_Leg3_12-20JUL\20 13-43-0178.hex P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Apr 16 2014 09:10:45, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-43\Processing\convert\2013-43-017 8.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Apr 16 2014 10:02:22, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-43\Processing\wildedit\2013-43-01 78.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = Apr 16 2014 10:42:38, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-43\Processing\align\2013-43-0178.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Apr 16 2014 10:43:58, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-43\Processing\celltm\2013-43-0178.c nv P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # derive_time_window_docdt = seconds: 1 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 1 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some records near the top of the cast; salinity was cleaned lightly. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited except that some records were removed in editing temperature and salinity. The salinity calibration samples were lost. There are large differences between the 2 salinity and temperature channels. Post-cruise conductivity sensor calibrations showed no significant drift in those sensors, but there was no post-cruise information available for the temperature sensors at the time of initial processing. The secondary temperature sensor malfunctioned during an earlier cruise, so the primary temperature and salinity were selected for archiving. Salinity was not recalibrated, but recalibration will be applied later if the factory report on the primary temperature sensor indicates it is necessary. There was no calibration sampling for dissolved oxygen, but the results of a comparison with titrated samples during cruise 2013-16 was used to recalibrate the Dissolve Oxygen concentration. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see processing report: 2013-43-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.418E-01 1.0706) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 4.0 11.0886 2.500 8.911 31.0006 5.43 237.0 28 5.0 11.0647 2.789 8.910 31.0075 5.36 233.8 28 6.0 11.0250 3.013 8.909 31.0205 5.29 230.5 22 7.0 10.9533 3.230 8.909 31.0419 5.19 226.5 23 8.0 10.8738 3.389 8.908 31.0623 5.12 223.2 27 9.0 10.7128 3.344 8.904 31.0966 5.09 222.0 30 10.0 10.6077 3.297 8.900 31.1111 5.10 222.3 27 11.0 10.5523 3.341 8.896 31.1149 5.11 222.6 25 12.0 10.5558 3.438 8.890 31.1164 5.11 222.6 24 13.0 10.5752 3.606 8.884 31.1247 5.09 222.1 22 14.0 10.5677 3.754 8.878 31.1312 5.08 221.5 22 15.0 10.5577 3.737 8.874 31.1344 5.07 221.0 21 16.0 10.5279 3.826 8.875 31.1503 5.05 220.3 24 17.0 10.5138 3.798 8.874 31.1680 5.04 219.6 27 18.0 10.4878 3.768 8.873 31.2022 4.99 217.6 24 19.0 10.4740 3.725 8.871 31.2195 4.92 214.6 24 20.0 10.4463 3.727 8.869 31.2454 4.87 212.2 23 21.0 10.4059 3.524 8.869 31.2840 4.80 209.4 25 22.0 10.3207 3.306 8.866 31.3723 4.72 205.6 26 23.0 10.2732 3.193 8.864 31.4203 4.63 202.0 27 24.0 10.1951 2.955 8.857 31.4578 4.58 199.6 21 25.0 10.1332 2.765 8.849 31.4691 4.54 198.1 21 26.0 10.0883 2.679 8.841 31.4802 4.52 196.8 21 27.0 10.0508 2.544 8.833 31.4913 4.50 196.0 28 28.0 10.0162 2.385 8.827 31.5049 4.46 194.3 35 29.0 10.0030 2.335 8.822 31.5164 4.34 189.2 30 30.0 9.9837 2.166 8.816 31.5334 4.17 181.6 23 31.0 9.9670 2.142 8.814 31.5431 4.08 177.9 19 32.0 9.8572 1.843 8.811 31.5794 4.06 176.8 12 33.0 9.6315 1.599 8.807 31.6745 4.04 176.3 21 34.0 9.5627 1.646 8.795 31.7217 3.99 173.9 28 35.0 9.5413 1.578 8.783 31.7335 3.90 170.1 37 36.0 9.4457 1.366 8.778 31.7660 3.87 168.4 28 37.0 9.3758 1.284 8.772 31.7897 3.85 167.8 24 38.0 9.3606 1.205 8.767 31.7926 3.85 167.9 23 39.0 9.3428 1.191 8.763 31.7949 3.83 167.0 23 40.0 9.3485 1.167 8.761 31.8007 3.80 165.7 25 41.0 9.3433 1.188 8.760 31.8035 3.77 164.1 23 42.0 9.3091 1.152 8.761 31.8159 3.74 163.1 24 43.0 9.2667 1.129 8.760 31.8293 3.73 162.6 26 44.0 9.2496 1.076 8.757 31.8335 3.70 161.1 29 45.0 9.2390 1.040 8.754 31.8364 3.64 158.8 31 46.0 9.2135 1.014 8.754 31.8465 3.57 155.6 25 47.0 9.1703 0.927 8.753 31.8567 3.51 152.8 21 48.0 9.1132 0.872 8.750 31.8844 3.47 151.0 21 49.0 9.0550 0.758 8.748 31.9056 3.44 149.9 24 50.0 8.9826 0.625 8.745 31.9272 3.43 149.6 26 51.0 8.9460 0.615 8.742 31.9464 3.44 149.9 26 52.0 8.9388 0.652 8.737 31.9593 3.45 150.4 27 53.0 8.9185 0.702 8.733 31.9950 3.47 151.2 26 54.0 8.9235 0.791 8.730 32.0055 3.49 152.1 24 55.0 8.9335 0.859 8.729 32.0252 3.50 152.3 24 56.0 8.9371 0.905 8.728 32.0325 3.49 152.2 24 57.0 8.9472 0.989 8.727 32.0431 3.48 151.8 23 58.0 8.9467 0.964 8.726 32.0468 3.49 152.0 19 59.0 8.9419 0.987 8.727 32.0507 3.50 152.3 21 60.0 8.9419 1.015 8.729 32.0528 3.51 152.8 23 61.0 8.9460 1.026 8.728 32.0573 3.52 153.3 29 62.0 8.9503 1.063 8.729 32.0618 3.53 153.9 31 63.0 8.9638 1.163 8.728 32.0735 3.53 153.7 27 64.0 8.9696 1.161 8.729 32.0834 3.51 152.9 27 65.0 8.9698 1.160 8.730 32.0933 3.46 150.7 22 66.0 8.9602 1.154 8.729 32.1095 3.40 148.1 20 67.0 8.9102 1.168 8.730 32.1571 3.33 145.2 21 68.0 8.8386 1.162 8.730 32.2120 3.26 141.9 22 69.0 8.7569 1.149 8.727 32.2614 3.17 137.9 32 70.0 8.5692 1.028 8.726 32.3718 3.07 133.6 35 71.0 8.4676 0.929 8.724 32.4311 2.99 130.2 26 72.0 8.3493 0.850 8.718 32.5072 2.93 127.4 22 73.0 8.3006 0.798 8.711 32.5404 2.88 125.2 22 74.0 8.1984 0.771 8.703 32.6114 2.84 123.6 20 75.0 8.1317 0.792 8.695 32.6582 2.81 122.2 25 76.0 8.0624 0.762 8.689 32.7066 2.78 120.9 26 77.0 7.9969 0.738 8.683 32.7495 2.73 118.8 31 78.0 7.9611 0.719 8.678 32.7785 2.66 115.8 34 79.0 7.8759 0.676 8.675 32.8422 2.61 113.7 28 80.0 7.8049 0.608 8.671 32.8917 2.60 113.1 21 81.0 7.7458 0.633 8.667 32.9365 2.60 113.1 21 82.0 7.7349 0.611 8.662 32.9460 2.59 112.8 22 83.0 7.7299 0.616 8.658 32.9510 2.59 112.8 24 84.0 7.7166 0.622 8.655 32.9629 2.58 112.2 24 85.0 7.7146 0.627 8.654 32.9651 2.57 111.8 29 86.0 7.7127 0.603 8.654 32.9673 2.55 110.9 26 87.0 7.6972 0.611 8.652 32.9796 2.54 110.4 27 88.0 7.6809 0.589 8.651 32.9924 2.52 109.8 25 89.0 7.6638 0.609 8.650 33.0058 2.51 109.2 23 90.0 7.6360 0.626 8.650 33.0266 2.50 108.8 37 91.0 7.6185 0.651 8.647 33.0385 2.50 108.8 37